Gvermi12717.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12717.t1
Unique Name	Gvermi12717.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	428

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1111114..1112397 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703384.1
Preferred name	ADSS
PFAMs	Adenylsucc_synt
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00458,RC00459
KEGG ko	ko:K01939
KEGG Reaction	R01135
KEGG Pathway	ko00230,ko00250,ko01100,map00230,map00250,map01100
KEGG Module	M00049
GOs	GO:0000166,GO:0001882,GO:0001883,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003779,GO:0003824,GO:0003924,GO:0004019,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006106,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006520,GO:0006531,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007517,GO:0007519,GO:0008092,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009888,GO:0009987,GO:0010035,GO:0010038,GO:0014706,GO:0014902,GO:0014904,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016874,GO:0016879,GO:0017076,GO:0017111,GO:0017144,GO:0018130,GO:0019001,GO:0019438,GO:0019637,GO:0019693,GO:0019725,GO:0019752,GO:0030154,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034404,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042221,GO:0042278,GO:0042301,GO:0042451,GO:0042455,GO:0042592,GO:0042692,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043565,GO:0043648,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046033,GO:0046040,GO:0046085,GO:0046086,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0046686,GO:0046716,GO:0046983,GO:0048046,GO:0048468,GO:0048513,GO:0048731,GO:0048741,GO:0048747,GO:0048856,GO:0048869,GO:0050896,GO:0051015,GO:0051146,GO:0051716,GO:0055001,GO:0055002,GO:0055086,GO:0060249,GO:0060537,GO:0060538,GO:0061061,GO:0061483,GO:0065007,GO:0065008,GO:0070887,GO:0071241,GO:0071248,GO:0071276,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901657,GO:1901659,GO:1990837
Evalue	1.74e-185
EggNOG OGs	COG0104@1\|root,KOG1355@2759\|Eukaryota
EC	6.3.4.4
Description	adenylosuccinate synthase activity
COG category	F
BiGG Reaction	iRC1080.CRv4_Au5_s17_g7726_t1
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12717	Gvermi12717	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1111114..1112397 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12717.t1.stop1	Gvermi12717.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1111114..1111116 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12717.t1.CDS1	Gvermi12717.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1111114..1112397 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12717.t1.exon1	Gvermi12717.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1111114..1112397 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12717.t1.start1	Gvermi12717.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1112395..1112397 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12717.t1	Gvermi12717.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1111114..1112397 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1111114..1112397-
coding sequence from alignment at ScGOVlb_425:1111114..1112397-

mRNA sequence

>Gvermi12717.t1 ID=Gvermi12717.t1|Name=Gvermi12717.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=428bp
MKPGGNVLVVLGAQWGDEGKGKLIDILSKDYDILARAAGGANAGHTIVVD
SVKYAFHLLPSGLLHDHVTALIGNGVVMHVPKFMSELQQLRDKGVDAAPR
IRVSDRCHLLFDYHQIVDGLREVERGKAKIGTTGRGIGPCYSSKANRTNI
RVGDLRHFRSFPAAFRRSLASKHKRFHHFDYDVRNEIAKYYQYAKQLEPC
ITDTVAVLNNAITNNTHAVLVEGANAALLDIDFGTYPFVTSSNCTAGGVC
TGLGIPPRAIGQVIAVVKAYTTRVGEGPFPTELHDHLGETLQKEGHEYGT
TTARPRRCGWLDAFMLQYTHSINGYTQICLTKLDVLSHFETLKIGVSYNV
RGRKITYYPSSLKLLAEAEVEYVEMPGWKGIDISGVRQFEHLPANAQQYV
LKIEQLLGVPITSVGVGPSREAIIFRG*

spliced messenger RNA

>Gvermi12717.t1 ID=Gvermi12717.t1|Name=Gvermi12717.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at ScGOVlb_425:1111114..1112397- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCCGGAGGAAACGTGCTGGTTGTGCTCGGCGCCCAGTGGGGCGA
CGAGGGCAAGGGTAAGCTTATCGACATCCTCAGCAAGGACTATGACATTC
TCGCACGCGCCGCGGGCGGCGCCAACGCCGGCCATACCATCGTCGTCGAC
TCCGTCAAGTACGCCTTCCATCTGCTGCCGTCGGGCCTGCTACACGACCA
CGTCACCGCCCTCATCGGCAACGGCGTCGTCATGCACGTGCCCAAGTTCA
TGTCAGAGCTGCAGCAGCTGCGCGACAAGGGCGTCGACGCCGCCCCGCGC
ATCCGCGTCTCGGATCGCTGCCACCTGCTGTTCGACTACCACCAGATCGT
CGACGGCCTGCGCGAGGTTGAGCGCGGAAAGGCCAAGATTGGAACCACTG
GACGCGGCATCGGCCCGTGCTACTCGTCCAAGGCCAACCGCACCAACATA
CGCGTCGGCGACTTGCGCCACTTCCGCTCCTTCCCCGCCGCCTTTCGCCG
CAGTCTGGCCTCCAAGCACAAGCGTTTTCACCATTTTGACTACGATGTCA
GGAACGAAATTGCAAAGTATTACCAGTACGCCAAGCAGCTGGAGCCTTGC
ATCACCGACACCGTTGCCGTGCTCAACAACGCCATCACCAACAACACCCA
CGCAGTGCTCGTAGAAGGCGCCAACGCCGCGCTGCTCGACATCGACTTTG
GGACGTACCCGTTCGTCACCTCCAGCAACTGCACGGCTGGTGGTGTCTGC
ACGGGTCTGGGAATCCCGCCGCGCGCCATCGGCCAGGTCATTGCTGTCGT
CAAGGCCTACACGACCCGCGTAGGGGAGGGACCCTTTCCGACCGAGTTGC
ACGACCACTTGGGCGAGACACTGCAAAAGGAGGGCCACGAGTACGGCACC
ACCACGGCGCGACCAAGGCGGTGCGGCTGGCTGGACGCCTTCATGCTCCA
ATACACGCATTCCATCAACGGCTACACCCAAATCTGCCTCACAAAGCTGG
ACGTCCTGTCGCACTTTGAAACGCTCAAGATCGGTGTCTCGTACAACGTG
CGCGGCAGAAAAATCACCTACTACCCGTCGTCGCTCAAGCTGCTCGCCGA
GGCTGAGGTGGAGTATGTTGAGATGCCCGGATGGAAGGGTATCGACATCT
CAGGTGTGCGTCAGTTCGAGCACTTGCCCGCAAATGCTCAGCAATACGTT
CTCAAGATTGAACAACTGCTGGGCGTCCCCATCACATCAGTCGGCGTGGG
CCCCAGTCGCGAGGCAATCATTTTCCGAGGTTAA

protein sequence of Gvermi12717.t1

>Gvermi12717.t1 ID=Gvermi12717.t1|Name=Gvermi12717.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=428bp
MKPGGNVLVVLGAQWGDEGKGKLIDILSKDYDILARAAGGANAGHTIVVD
SVKYAFHLLPSGLLHDHVTALIGNGVVMHVPKFMSELQQLRDKGVDAAPR
IRVSDRCHLLFDYHQIVDGLREVERGKAKIGTTGRGIGPCYSSKANRTNI
RVGDLRHFRSFPAAFRRSLASKHKRFHHFDYDVRNEIAKYYQYAKQLEPC
ITDTVAVLNNAITNNTHAVLVEGANAALLDIDFGTYPFVTSSNCTAGGVC
TGLGIPPRAIGQVIAVVKAYTTRVGEGPFPTELHDHLGETLQKEGHEYGT
TTARPRRCGWLDAFMLQYTHSINGYTQICLTKLDVLSHFETLKIGVSYNV
RGRKITYYPSSLKLLAEAEVEYVEMPGWKGIDISGVRQFEHLPANAQQYV
LKIEQLLGVPITSVGVGPSREAIIFRG*

mRNA from alignment at ScGOVlb_425:1111114..1112397-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12717.t1 ID=Gvermi12717.t1|Name=Gvermi12717.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at ScGOVlb_425:1111114..1112397- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCCCGGAGGAAACGTGCTGGTTGTGCTCGGCGCCCAGTGGGGCGA
CGAGGGCAAGGGTAAGCTTATCGACATCCTCAGCAAGGACTATGACATTC
TCGCACGCGCCGCGGGCGGCGCCAACGCCGGCCATACCATCGTCGTCGAC
TCCGTCAAGTACGCCTTCCATCTGCTGCCGTCGGGCCTGCTACACGACCA
CGTCACCGCCCTCATCGGCAACGGCGTCGTCATGCACGTGCCCAAGTTCA
TGTCAGAGCTGCAGCAGCTGCGCGACAAGGGCGTCGACGCCGCCCCGCGC
ATCCGCGTCTCGGATCGCTGCCACCTGCTGTTCGACTACCACCAGATCGT
CGACGGCCTGCGCGAGGTTGAGCGCGGAAAGGCCAAGATTGGAACCACTG
GACGCGGCATCGGCCCGTGCTACTCGTCCAAGGCCAACCGCACCAACATA
CGCGTCGGCGACTTGCGCCACTTCCGCTCCTTCCCCGCCGCCTTTCGCCG
CAGTCTGGCCTCCAAGCACAAGCGTTTTCACCATTTTGACTACGATGTCA
GGAACGAAATTGCAAAGTATTACCAGTACGCCAAGCAGCTGGAGCCTTGC
ATCACCGACACCGTTGCCGTGCTCAACAACGCCATCACCAACAACACCCA
CGCAGTGCTCGTAGAAGGCGCCAACGCCGCGCTGCTCGACATCGACTTTG
GGACGTACCCGTTCGTCACCTCCAGCAACTGCACGGCTGGTGGTGTCTGC
ACGGGTCTGGGAATCCCGCCGCGCGCCATCGGCCAGGTCATTGCTGTCGT
CAAGGCCTACACGACCCGCGTAGGGGAGGGACCCTTTCCGACCGAGTTGC
ACGACCACTTGGGCGAGACACTGCAAAAGGAGGGCCACGAGTACGGCACC
ACCACGGCGCGACCAAGGCGGTGCGGCTGGCTGGACGCCTTCATGCTCCA
ATACACGCATTCCATCAACGGCTACACCCAAATCTGCCTCACAAAGCTGG
ACGTCCTGTCGCACTTTGAAACGCTCAAGATCGGTGTCTCGTACAACGTG
CGCGGCAGAAAAATCACCTACTACCCGTCGTCGCTCAAGCTGCTCGCCGA
GGCTGAGGTGGAGTATGTTGAGATGCCCGGATGGAAGGGTATCGACATCT
CAGGTGTGCGTCAGTTCGAGCACTTGCCCGCAAATGCTCAGCAATACGTT
CTCAAGATTGAACAACTGCTGGGCGTCCCCATCACATCAGTCGGCGTGGG
CCCCAGTCGCGAGGCAATCATTTTCCGAGGTTAA

Coding sequence (CDS) from alignment at ScGOVlb_425:1111114..1112397-

>Gvermi12717.t1 ID=Gvermi12717.t1|Name=Gvermi12717.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1284bp|location=Sequence derived from alignment at ScGOVlb_425:1111114..1112397- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCCCGGAGGAAACGTGCTGGTTGTGCTCGGCGCCCAGTGGGGCGA
CGAGGGCAAGGGTAAGCTTATCGACATCCTCAGCAAGGACTATGACATTC
TCGCACGCGCCGCGGGCGGCGCCAACGCCGGCCATACCATCGTCGTCGAC
TCCGTCAAGTACGCCTTCCATCTGCTGCCGTCGGGCCTGCTACACGACCA
CGTCACCGCCCTCATCGGCAACGGCGTCGTCATGCACGTGCCCAAGTTCA
TGTCAGAGCTGCAGCAGCTGCGCGACAAGGGCGTCGACGCCGCCCCGCGC
ATCCGCGTCTCGGATCGCTGCCACCTGCTGTTCGACTACCACCAGATCGT
CGACGGCCTGCGCGAGGTTGAGCGCGGAAAGGCCAAGATTGGAACCACTG
GACGCGGCATCGGCCCGTGCTACTCGTCCAAGGCCAACCGCACCAACATA
CGCGTCGGCGACTTGCGCCACTTCCGCTCCTTCCCCGCCGCCTTTCGCCG
CAGTCTGGCCTCCAAGCACAAGCGTTTTCACCATTTTGACTACGATGTCA
GGAACGAAATTGCAAAGTATTACCAGTACGCCAAGCAGCTGGAGCCTTGC
ATCACCGACACCGTTGCCGTGCTCAACAACGCCATCACCAACAACACCCA
CGCAGTGCTCGTAGAAGGCGCCAACGCCGCGCTGCTCGACATCGACTTTG
GGACGTACCCGTTCGTCACCTCCAGCAACTGCACGGCTGGTGGTGTCTGC
ACGGGTCTGGGAATCCCGCCGCGCGCCATCGGCCAGGTCATTGCTGTCGT
CAAGGCCTACACGACCCGCGTAGGGGAGGGACCCTTTCCGACCGAGTTGC
ACGACCACTTGGGCGAGACACTGCAAAAGGAGGGCCACGAGTACGGCACC
ACCACGGCGCGACCAAGGCGGTGCGGCTGGCTGGACGCCTTCATGCTCCA
ATACACGCATTCCATCAACGGCTACACCCAAATCTGCCTCACAAAGCTGG
ACGTCCTGTCGCACTTTGAAACGCTCAAGATCGGTGTCTCGTACAACGTG
CGCGGCAGAAAAATCACCTACTACCCGTCGTCGCTCAAGCTGCTCGCCGA
GGCTGAGGTGGAGTATGTTGAGATGCCCGGATGGAAGGGTATCGACATCT
CAGGTGTGCGTCAGTTCGAGCACTTGCCCGCAAATGCTCAGCAATACGTT
CTCAAGATTGAACAACTGCTGGGCGTCCCCATCACATCAGTCGGCGTGGG
CCCCAGTCGCGAGGCAATCATTTTCCGAGGTTAA