Gvermi12715.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12715.t1
Unique Name	Gvermi12715.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	349

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1107510..1108556 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	28583.AMAG_09016T1
Preferred name	DOT5
PFAMs	AhpC-TSA
Max annot lvl	4751\|Fungi
KEGG ko	ko:K03564
GOs	GO:0000302,GO:0000303,GO:0000305,GO:0003674,GO:0003824,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006801,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008379,GO:0009056,GO:0009636,GO:0009987,GO:0010035,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0019430,GO:0019725,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0042221,GO:0042493,GO:0042542,GO:0042592,GO:0042737,GO:0042743,GO:0042744,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044424,GO:0044464,GO:0045454,GO:0046677,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0051920,GO:0055114,GO:0061687,GO:0061691,GO:0061692,GO:0065007,GO:0065008,GO:0070301,GO:0070887,GO:0071236,GO:0071450,GO:0071451,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1901701,GO:1990748
Evalue	1.53e-15
EggNOG OGs	COG1225@1\|root,KOG0855@2759\|Eukaryota,3A1K4@33154\|Opisthokonta,3P2T2@4751\|Fungi
EC	1.11.1.15
Description	Disrupter of telomere silencing protein
COG category	O
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12715	Gvermi12715	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1107510..1108556 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12715.t1.start1	Gvermi12715.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1107510..1107512 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12715.t1.CDS1	Gvermi12715.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1107510..1108556 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12715.t1.exon1	Gvermi12715.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1107510..1108556 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12715.t1.stop1	Gvermi12715.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1108554..1108556 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12715.t1	Gvermi12715.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1107510..1108556 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1107510..1108556+
coding sequence from alignment at ScGOVlb_425:1107510..1108556+

mRNA sequence

>Gvermi12715.t1 ID=Gvermi12715.t1|Name=Gvermi12715.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=349bp
MVSTRSKTGATPARSPVKTISKKRHPKPADTSPRDAAPHPFPDVSLHTDS
GAIISTHSLLSDATPGLILFTYPRANTGGCTTQAKGLSALRSDALAAGYS
IVGCSYDSVKSQAAWKVKSSIPLTLLSDTPSSGLLRKLAVHKPPRSVKRS
VFVIVRDGGNLHIVFAKRAVSPKDSIALMEQYISDNPLDTTADNSNLDHD
MAVNKPQPAAAATTDDAGDKPQDKQPAEQHVQKPDQSPAAAHIANHADAG
NSAPHADAHTDKVATEPAGDQPAAENPNPKPVDAPKPPQDANSNKPAEQS
QPTPDPKPAEHDPSAKVQKDTPEDKPSTVAVEKPVVMDVEKPQEEIKA*

spliced messenger RNA

>Gvermi12715.t1 ID=Gvermi12715.t1|Name=Gvermi12715.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1047bp|location=Sequence derived from alignment at ScGOVlb_425:1107510..1108556+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCTCCACGCGCAGCAAGACAGGCGCCACCCCCGCCCGCTCCCCCGT
CAAGACCATCTCAAAGAAGCGTCACCCCAAGCCCGCCGACACCTCTCCGC
GCGACGCCGCCCCGCACCCGTTTCCCGATGTCTCGCTGCACACCGATTCC
GGAGCTATAATCTCCACCCACTCGCTCCTCTCCGACGCCACCCCCGGTCT
CATTCTGTTCACGTACCCCCGCGCCAACACCGGCGGCTGCACCACGCAGG
CCAAGGGCCTCTCCGCGCTGCGCTCCGACGCACTCGCCGCCGGCTACTCC
ATCGTCGGCTGCAGCTATGACTCCGTCAAGTCCCAGGCCGCGTGGAAGGT
CAAGAGCTCCATCCCGCTCACGTTGCTCAGCGATACCCCGAGCTCCGGCT
TGCTGCGCAAGCTCGCCGTGCACAAGCCGCCGCGCAGCGTCAAGCGCTCT
GTTTTCGTCATTGTGCGCGACGGTGGAAACTTACACATTGTGTTTGCCAA
ACGCGCCGTGTCCCCGAAGGATTCCATCGCGCTCATGGAGCAGTACATAA
GCGACAATCCGCTCGACACCACCGCCGACAACTCCAACCTCGATCACGAC
ATGGCCGTAAATAAGCCTCAGCCTGCGGCTGCTGCTACCACTGACGACGC
TGGTGACAAGCCTCAGGACAAACAGCCTGCCGAGCAGCACGTTCAAAAGC
CCGATCAGTCCCCGGCTGCCGCTCACATCGCCAACCACGCCGACGCCGGA
AACTCCGCACCGCACGCGGATGCTCACACCGACAAAGTTGCTACCGAGCC
TGCGGGCGACCAACCCGCCGCTGAGAACCCTAATCCGAAGCCGGTTGACG
CCCCCAAGCCGCCGCAAGATGCAAACTCCAACAAGCCCGCTGAACAGTCG
CAACCGACCCCGGATCCGAAGCCCGCGGAGCACGATCCTTCCGCGAAGGT
CCAAAAAGATACACCCGAAGACAAACCAAGCACCGTCGCTGTCGAAAAGC
CCGTCGTCATGGACGTGGAAAAGCCCCAAGAGGAGATCAAGGCGTAA

protein sequence of Gvermi12715.t1

>Gvermi12715.t1 ID=Gvermi12715.t1|Name=Gvermi12715.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=349bp
MVSTRSKTGATPARSPVKTISKKRHPKPADTSPRDAAPHPFPDVSLHTDS
GAIISTHSLLSDATPGLILFTYPRANTGGCTTQAKGLSALRSDALAAGYS
IVGCSYDSVKSQAAWKVKSSIPLTLLSDTPSSGLLRKLAVHKPPRSVKRS
VFVIVRDGGNLHIVFAKRAVSPKDSIALMEQYISDNPLDTTADNSNLDHD
MAVNKPQPAAAATTDDAGDKPQDKQPAEQHVQKPDQSPAAAHIANHADAG
NSAPHADAHTDKVATEPAGDQPAAENPNPKPVDAPKPPQDANSNKPAEQS
QPTPDPKPAEHDPSAKVQKDTPEDKPSTVAVEKPVVMDVEKPQEEIKA*

mRNA from alignment at ScGOVlb_425:1107510..1108556+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12715.t1 ID=Gvermi12715.t1|Name=Gvermi12715.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1047bp|location=Sequence derived from alignment at ScGOVlb_425:1107510..1108556+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCTCCACGCGCAGCAAGACAGGCGCCACCCCCGCCCGCTCCCCCGT
CAAGACCATCTCAAAGAAGCGTCACCCCAAGCCCGCCGACACCTCTCCGC
GCGACGCCGCCCCGCACCCGTTTCCCGATGTCTCGCTGCACACCGATTCC
GGAGCTATAATCTCCACCCACTCGCTCCTCTCCGACGCCACCCCCGGTCT
CATTCTGTTCACGTACCCCCGCGCCAACACCGGCGGCTGCACCACGCAGG
CCAAGGGCCTCTCCGCGCTGCGCTCCGACGCACTCGCCGCCGGCTACTCC
ATCGTCGGCTGCAGCTATGACTCCGTCAAGTCCCAGGCCGCGTGGAAGGT
CAAGAGCTCCATCCCGCTCACGTTGCTCAGCGATACCCCGAGCTCCGGCT
TGCTGCGCAAGCTCGCCGTGCACAAGCCGCCGCGCAGCGTCAAGCGCTCT
GTTTTCGTCATTGTGCGCGACGGTGGAAACTTACACATTGTGTTTGCCAA
ACGCGCCGTGTCCCCGAAGGATTCCATCGCGCTCATGGAGCAGTACATAA
GCGACAATCCGCTCGACACCACCGCCGACAACTCCAACCTCGATCACGAC
ATGGCCGTAAATAAGCCTCAGCCTGCGGCTGCTGCTACCACTGACGACGC
TGGTGACAAGCCTCAGGACAAACAGCCTGCCGAGCAGCACGTTCAAAAGC
CCGATCAGTCCCCGGCTGCCGCTCACATCGCCAACCACGCCGACGCCGGA
AACTCCGCACCGCACGCGGATGCTCACACCGACAAAGTTGCTACCGAGCC
TGCGGGCGACCAACCCGCCGCTGAGAACCCTAATCCGAAGCCGGTTGACG
CCCCCAAGCCGCCGCAAGATGCAAACTCCAACAAGCCCGCTGAACAGTCG
CAACCGACCCCGGATCCGAAGCCCGCGGAGCACGATCCTTCCGCGAAGGT
CCAAAAAGATACACCCGAAGACAAACCAAGCACCGTCGCTGTCGAAAAGC
CCGTCGTCATGGACGTGGAAAAGCCCCAAGAGGAGATCAAGGCGTAA

Coding sequence (CDS) from alignment at ScGOVlb_425:1107510..1108556+

>Gvermi12715.t1 ID=Gvermi12715.t1|Name=Gvermi12715.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1047bp|location=Sequence derived from alignment at ScGOVlb_425:1107510..1108556+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCTCCACGCGCAGCAAGACAGGCGCCACCCCCGCCCGCTCCCCCGT
CAAGACCATCTCAAAGAAGCGTCACCCCAAGCCCGCCGACACCTCTCCGC
GCGACGCCGCCCCGCACCCGTTTCCCGATGTCTCGCTGCACACCGATTCC
GGAGCTATAATCTCCACCCACTCGCTCCTCTCCGACGCCACCCCCGGTCT
CATTCTGTTCACGTACCCCCGCGCCAACACCGGCGGCTGCACCACGCAGG
CCAAGGGCCTCTCCGCGCTGCGCTCCGACGCACTCGCCGCCGGCTACTCC
ATCGTCGGCTGCAGCTATGACTCCGTCAAGTCCCAGGCCGCGTGGAAGGT
CAAGAGCTCCATCCCGCTCACGTTGCTCAGCGATACCCCGAGCTCCGGCT
TGCTGCGCAAGCTCGCCGTGCACAAGCCGCCGCGCAGCGTCAAGCGCTCT
GTTTTCGTCATTGTGCGCGACGGTGGAAACTTACACATTGTGTTTGCCAA
ACGCGCCGTGTCCCCGAAGGATTCCATCGCGCTCATGGAGCAGTACATAA
GCGACAATCCGCTCGACACCACCGCCGACAACTCCAACCTCGATCACGAC
ATGGCCGTAAATAAGCCTCAGCCTGCGGCTGCTGCTACCACTGACGACGC
TGGTGACAAGCCTCAGGACAAACAGCCTGCCGAGCAGCACGTTCAAAAGC
CCGATCAGTCCCCGGCTGCCGCTCACATCGCCAACCACGCCGACGCCGGA
AACTCCGCACCGCACGCGGATGCTCACACCGACAAAGTTGCTACCGAGCC
TGCGGGCGACCAACCCGCCGCTGAGAACCCTAATCCGAAGCCGGTTGACG
CCCCCAAGCCGCCGCAAGATGCAAACTCCAACAAGCCCGCTGAACAGTCG
CAACCGACCCCGGATCCGAAGCCCGCGGAGCACGATCCTTCCGCGAAGGT
CCAAAAAGATACACCCGAAGACAAACCAAGCACCGTCGCTGTCGAAAAGC
CCGTCGTCATGGACGTGGAAAAGCCCCAAGAGGAGATCAAGGCGTAA