Gvermi12712.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12712.t1
Unique NameGvermi12712.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length494
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1102058..1103646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707052.1
PFAMsDAHP_synth_2
Max annot lvl2759|Eukaryota
KEGG rclassRC00435
KEGG koko:K01626
KEGG ReactionR01826
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,ko02024,map00400,map01100,map01110,map01130,map01230,map02024
KEGG ModuleM00022
Evalue4.92e-230
EggNOG OGsCOG3200@1|root,2QPP7@2759|Eukaryota
EC2.5.1.54
Description3-deoxy-7-phosphoheptulonate synthase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12712Gvermi12712Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1102058..1103646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12712.t1Gvermi12712.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1102058..1103646 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12712.t1.stop1Gvermi12712.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1102058..1102060 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12712.t1.CDS1Gvermi12712.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1102058..1102122 -
Gvermi12712.t1.CDS2Gvermi12712.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1102230..1103646 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12712.t1.exon1Gvermi12712.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1102058..1102122 -
Gvermi12712.t1.exon2Gvermi12712.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1102230..1103646 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12712.t1.intron1Gvermi12712.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1102123..1102229 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12712.t1.start1Gvermi12712.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1103644..1103646 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12712.t1 ID=Gvermi12712.t1|Name=Gvermi12712.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=494bp
MFPAFAFLAPTAVRAPPRRSAACVSRSAPRMVATEPPATKRLWTPDSWRT
MPIKQVPNYPDQKALSDMEDRLRRSLPLVFSGECEALKQLLATAAKGEAF
VIQGGDCAESFKEFDTYGGKNIADTFTLVIQMSIMLMYALRRPVVKILRA
AGQFAKPRSSPYEKKKNQELSLPSYRGDIINAAGFTLEERVPDPQRMYKA
FVQSTATINLLRTLASGGALDLHRVHDISLQFVRNTPQGRKYAQYASDID
NAIAFMEAIGLQSDSYKIKQAEFYVSHESLLLPYEQALCRQDPVTGKYYA
TSGHFLWLGDRTRQPDGAHVEFMRGIANPIGIKCGPSLSPQDLVQLLDIL
NPDNEPGRITLITRVGAGKVHDHLPRFIETVKREGRNVVWSCDPCHGNTE
TTQGGFKTRKFEKIVQEVTEFFAVHESMGTYPGGVHLELTGQDVTECVGG
MMELTDDDLKKRYETHCDPRLNASQALELALKLSEEMQNRCLL*
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spliced messenger RNA

>Gvermi12712.t1 ID=Gvermi12712.t1|Name=Gvermi12712.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1482bp|location=Sequence derived from alignment at ScGOVlb_425:1102058..1103646- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCCCGCCTTCGCCTTCCTAGCCCCGACGGCTGTGCGCGCGCCCCC
GCGCCGTTCCGCCGCCTGCGTGTCGCGCTCCGCCCCACGCATGGTCGCCA
CCGAGCCGCCCGCCACCAAGCGCCTGTGGACGCCCGACAGCTGGCGCACC
ATGCCAATCAAGCAGGTACCCAACTACCCCGACCAAAAGGCACTCAGCGA
CATGGAGGACCGCCTGCGTCGCTCGCTCCCGCTCGTCTTCTCCGGCGAGT
GCGAGGCCCTCAAGCAGCTCCTGGCCACCGCTGCCAAGGGGGAGGCCTTC
GTCATCCAGGGCGGCGACTGCGCAGAGTCTTTCAAGGAGTTTGACACCTA
CGGCGGCAAGAACATCGCCGACACCTTCACCCTCGTCATCCAAATGTCCA
TCATGCTCATGTACGCGCTCCGCCGCCCCGTCGTCAAGATCCTGCGCGCC
GCCGGCCAGTTTGCTAAGCCCAGAAGCAGCCCGTACGAGAAGAAGAAGAA
CCAGGAGCTCTCGCTGCCCTCGTACCGCGGCGACATCATCAACGCCGCCG
GCTTCACCCTGGAAGAGCGCGTGCCTGACCCGCAGCGTATGTACAAGGCC
TTTGTGCAGTCCACCGCCACCATCAACTTGCTCCGCACCCTCGCGTCGGG
GGGGGCGCTCGATCTTCACCGTGTCCATGACATCAGTTTACAGTTCGTGC
GAAACACCCCGCAGGGCCGCAAATACGCCCAGTATGCCAGCGACATTGAT
AACGCCATCGCGTTTATGGAGGCCATTGGGCTGCAGAGTGATTCCTACAA
GATCAAACAGGCCGAGTTTTATGTTTCCCACGAGAGTTTATTGCTGCCGT
ATGAACAGGCTCTGTGCAGACAAGATCCCGTCACCGGCAAGTACTACGCC
ACTTCTGGCCATTTCCTCTGGCTTGGAGACCGAACACGACAGCCGGATGG
AGCTCATGTCGAATTCATGCGCGGCATTGCGAATCCGATCGGCATCAAGT
GCGGCCCGTCTCTATCCCCGCAAGATCTCGTTCAGCTGCTCGACATTTTG
AATCCCGACAATGAGCCTGGAAGAATCACGCTCATCACCAGGGTTGGCGC
CGGAAAAGTTCACGACCATCTTCCGAGATTCATCGAAACGGTGAAGCGCG
AAGGCAGAAACGTCGTGTGGAGCTGTGATCCATGCCATGGAAACACTGAG
ACCACCCAGGGCGGTTTCAAGACCCGCAAGTTTGAAAAAATTGTGCAAGA
AGTCACAGAGTTCTTTGCCGTTCATGAGAGCATGGGTACCTACCCCGGCG
GCGTGCATCTCGAACTCACTGGCCAAGATGTGACAGAATGTGTCGGAGGA
ATGATGGAACTCACCGATGACGACCTCAAAAAGCGTTACGAAACTCACTG
TGACCCTCGACTGAATGCCTCGCAAGCACTCGAGTTGGCCCTCAAACTTT
CAGAAGAGATGCAAAATCGATGCCTCCTTTAA
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protein sequence of Gvermi12712.t1

>Gvermi12712.t1 ID=Gvermi12712.t1|Name=Gvermi12712.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=494bp
MFPAFAFLAPTAVRAPPRRSAACVSRSAPRMVATEPPATKRLWTPDSWRT
MPIKQVPNYPDQKALSDMEDRLRRSLPLVFSGECEALKQLLATAAKGEAF
VIQGGDCAESFKEFDTYGGKNIADTFTLVIQMSIMLMYALRRPVVKILRA
AGQFAKPRSSPYEKKKNQELSLPSYRGDIINAAGFTLEERVPDPQRMYKA
FVQSTATINLLRTLASGGALDLHRVHDISLQFVRNTPQGRKYAQYASDID
NAIAFMEAIGLQSDSYKIKQAEFYVSHESLLLPYEQALCRQDPVTGKYYA
TSGHFLWLGDRTRQPDGAHVEFMRGIANPIGIKCGPSLSPQDLVQLLDIL
NPDNEPGRITLITRVGAGKVHDHLPRFIETVKREGRNVVWSCDPCHGNTE
TTQGGFKTRKFEKIVQEVTEFFAVHESMGTYPGGVHLELTGQDVTECVGG
MMELTDDDLKKRYETHCDPRLNASQALELALKLSEEMQNRCLL*
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mRNA from alignment at ScGOVlb_425:1102058..1103646-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12712.t1 ID=Gvermi12712.t1|Name=Gvermi12712.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1589bp|location=Sequence derived from alignment at ScGOVlb_425:1102058..1103646- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTCCCGCCTTCGCCTTCCTAGCCCCGACGGCTGTGCGCGCGCCCCC
GCGCCGTTCCGCCGCCTGCGTGTCGCGCTCCGCCCCACGCATGGTCGCCA
CCGAGCCGCCCGCCACCAAGCGCCTGTGGACGCCCGACAGCTGGCGCACC
ATGCCAATCAAGCAGGTACCCAACTACCCCGACCAAAAGGCACTCAGCGA
CATGGAGGACCGCCTGCGTCGCTCGCTCCCGCTCGTCTTCTCCGGCGAGT
GCGAGGCCCTCAAGCAGCTCCTGGCCACCGCTGCCAAGGGGGAGGCCTTC
GTCATCCAGGGCGGCGACTGCGCAGAGTCTTTCAAGGAGTTTGACACCTA
CGGCGGCAAGAACATCGCCGACACCTTCACCCTCGTCATCCAAATGTCCA
TCATGCTCATGTACGCGCTCCGCCGCCCCGTCGTCAAGATCCTGCGCGCC
GCCGGCCAGTTTGCTAAGCCCAGAAGCAGCCCGTACGAGAAGAAGAAGAA
CCAGGAGCTCTCGCTGCCCTCGTACCGCGGCGACATCATCAACGCCGCCG
GCTTCACCCTGGAAGAGCGCGTGCCTGACCCGCAGCGTATGTACAAGGCC
TTTGTGCAGTCCACCGCCACCATCAACTTGCTCCGCACCCTCGCGTCGGG
GGGGGCGCTCGATCTTCACCGTGTCCATGACATCAGTTTACAGTTCGTGC
GAAACACCCCGCAGGGCCGCAAATACGCCCAGTATGCCAGCGACATTGAT
AACGCCATCGCGTTTATGGAGGCCATTGGGCTGCAGAGTGATTCCTACAA
GATCAAACAGGCCGAGTTTTATGTTTCCCACGAGAGTTTATTGCTGCCGT
ATGAACAGGCTCTGTGCAGACAAGATCCCGTCACCGGCAAGTACTACGCC
ACTTCTGGCCATTTCCTCTGGCTTGGAGACCGAACACGACAGCCGGATGG
AGCTCATGTCGAATTCATGCGCGGCATTGCGAATCCGATCGGCATCAAGT
GCGGCCCGTCTCTATCCCCGCAAGATCTCGTTCAGCTGCTCGACATTTTG
AATCCCGACAATGAGCCTGGAAGAATCACGCTCATCACCAGGGTTGGCGC
CGGAAAAGTTCACGACCATCTTCCGAGATTCATCGAAACGGTGAAGCGCG
AAGGCAGAAACGTCGTGTGGAGCTGTGATCCATGCCATGGAAACACTGAG
ACCACCCAGGGCGGTTTCAAGACCCGCAAGTTTGAAAAAATTGTGCAAGA
AGTCACAGAGTTCTTTGCCGTTCATGAGAGCATGGGTACCTACCCCGGCG
GCGTGCATCTCGAACTCACTGGCCAAGATGTGACAGAATGTGTCGGAGGA
ATGATGGAACTCACCGATGACGACCTCAAAAAGCGTTACGAAACTCACTG
TGACCCTCGACTGAATGGTAAGTACTTTCCTAACCATGGTTTGAATTTCT
AACTGCGCAGCGAAACTCAGAACAGCTCAATCTAACTCACCACATGTCTC
ACGTTGTTTAATCTGCCTACATAGCCTCGCAAGCACTCGAGTTGGCCCTC
AAACTTTCAGAAGAGATGCAAAATCGATGCCTCCTTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1102058..1103646-

>Gvermi12712.t1 ID=Gvermi12712.t1|Name=Gvermi12712.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1482bp|location=Sequence derived from alignment at ScGOVlb_425:1102058..1103646- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTCCCGCCTTCGCCTTCCTAGCCCCGACGGCTGTGCGCGCGCCCCC
GCGCCGTTCCGCCGCCTGCGTGTCGCGCTCCGCCCCACGCATGGTCGCCA
CCGAGCCGCCCGCCACCAAGCGCCTGTGGACGCCCGACAGCTGGCGCACC
ATGCCAATCAAGCAGGTACCCAACTACCCCGACCAAAAGGCACTCAGCGA
CATGGAGGACCGCCTGCGTCGCTCGCTCCCGCTCGTCTTCTCCGGCGAGT
GCGAGGCCCTCAAGCAGCTCCTGGCCACCGCTGCCAAGGGGGAGGCCTTC
GTCATCCAGGGCGGCGACTGCGCAGAGTCTTTCAAGGAGTTTGACACCTA
CGGCGGCAAGAACATCGCCGACACCTTCACCCTCGTCATCCAAATGTCCA
TCATGCTCATGTACGCGCTCCGCCGCCCCGTCGTCAAGATCCTGCGCGCC
GCCGGCCAGTTTGCTAAGCCCAGAAGCAGCCCGTACGAGAAGAAGAAGAA
CCAGGAGCTCTCGCTGCCCTCGTACCGCGGCGACATCATCAACGCCGCCG
GCTTCACCCTGGAAGAGCGCGTGCCTGACCCGCAGCGTATGTACAAGGCC
TTTGTGCAGTCCACCGCCACCATCAACTTGCTCCGCACCCTCGCGTCGGG
GGGGGCGCTCGATCTTCACCGTGTCCATGACATCAGTTTACAGTTCGTGC
GAAACACCCCGCAGGGCCGCAAATACGCCCAGTATGCCAGCGACATTGAT
AACGCCATCGCGTTTATGGAGGCCATTGGGCTGCAGAGTGATTCCTACAA
GATCAAACAGGCCGAGTTTTATGTTTCCCACGAGAGTTTATTGCTGCCGT
ATGAACAGGCTCTGTGCAGACAAGATCCCGTCACCGGCAAGTACTACGCC
ACTTCTGGCCATTTCCTCTGGCTTGGAGACCGAACACGACAGCCGGATGG
AGCTCATGTCGAATTCATGCGCGGCATTGCGAATCCGATCGGCATCAAGT
GCGGCCCGTCTCTATCCCCGCAAGATCTCGTTCAGCTGCTCGACATTTTG
AATCCCGACAATGAGCCTGGAAGAATCACGCTCATCACCAGGGTTGGCGC
CGGAAAAGTTCACGACCATCTTCCGAGATTCATCGAAACGGTGAAGCGCG
AAGGCAGAAACGTCGTGTGGAGCTGTGATCCATGCCATGGAAACACTGAG
ACCACCCAGGGCGGTTTCAAGACCCGCAAGTTTGAAAAAATTGTGCAAGA
AGTCACAGAGTTCTTTGCCGTTCATGAGAGCATGGGTACCTACCCCGGCG
GCGTGCATCTCGAACTCACTGGCCAAGATGTGACAGAATGTGTCGGAGGA
ATGATGGAACTCACCGATGACGACCTCAAAAAGCGTTACGAAACTCACTG
TGACCCTCGACTGAATGCCTCGCAAGCACTCGAGTTGGCCCTCAAACTTT
CAGAAGAGATGCAAAATCGATGCCTCCTTTAA
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