Gvermi12711.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12711.t1
Unique Name	Gvermi12711.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	425

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1100420..1101694 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	80637.XP_007775249.1
Preferred name	ARP6
PFAMs	Actin
Max annot lvl	4751\|Fungi
KEGG ko	ko:K11662
GOs	GO:0000228,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000812,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006325,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006996,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031491,GO:0031974,GO:0031981,GO:0032991,GO:0034399,GO:0034728,GO:0040029,GO:0043044,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043486,GO:0043933,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045814,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0070603,GO:0071824,GO:0071840,GO:0080090,GO:0097346,GO:0098687,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1904949,GO:2000112,GO:2000113,GO:2001141
Evalue	2.55e-82
EggNOG OGs	KOG0680@1\|root,KOG0680@2759\|Eukaryota,38D34@33154\|Opisthokonta,3NV2X@4751\|Fungi,3UZTH@5204\|Basidiomycota,22EEY@155619\|Agaricomycetes
Description	Belongs to the actin family
COG category	Z
BRITE	ko00000,ko03036,ko04812

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12711	Gvermi12711	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1100420..1101694 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12711.t1.start1	Gvermi12711.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1100420..1100422 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12711.t1.CDS1	Gvermi12711.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1100420..1101694 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12711.t1.exon1	Gvermi12711.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1100420..1101694 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12711.t1.stop1	Gvermi12711.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1101692..1101694 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12711.t1	Gvermi12711.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1100420..1101694 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1100420..1101694+
coding sequence from alignment at ScGOVlb_425:1100420..1101694+

mRNA sequence

>Gvermi12711.t1 ID=Gvermi12711.t1|Name=Gvermi12711.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=425bp
METKVVLDNGGSHIKAAKITAEEFKKIKANGPPPSALCVPNALARPAKNA
VQPPANKLGKSRRPPHFLVGREILIAPDTSGMSFRRPVDLGFVSTWDAQR
DVWNSVFSCDQGIGLSKAEMKNSSLIVTEQLGVPMHMRRAMDEYVFECFE
FSEYAPVPPQRLAALGVGKQTCLVLDSGFSFTTAVPIVEGQELGHCAKRL
KVGGKLLTNYLRELITYRSWNMTDESAVVNAVKERLCYLSLNYTSELSAC
KKGRGIMKEYVLPDLTRTMFDPVGHLLQEGEETDGTEQMLKMNNERIAIP
EILFNPSDIGLNQAGVAETIFQAVEACPEDVRGDMYENIILMGGNCLFPN
FKERLENELRPLVDSIYEVETFMDKEPTLTAFSGGVRAVVDNSTSVRYVS
RETFAELGSDGILRELYGDDMEID*

spliced messenger RNA

>Gvermi12711.t1 ID=Gvermi12711.t1|Name=Gvermi12711.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1275bp|location=Sequence derived from alignment at ScGOVlb_425:1100420..1101694+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAACAAAAGTCGTTTTGGATAATGGCGGCAGCCATATCAAAGCAGC
CAAGATTACCGCTGAGGAGTTCAAGAAGATCAAGGCGAATGGGCCACCAC
CAAGCGCACTATGTGTGCCCAATGCTCTCGCTCGTCCCGCTAAGAATGCT
GTGCAACCTCCGGCAAACAAACTTGGCAAATCCCGACGTCCACCCCATTT
CCTGGTCGGCCGCGAAATCTTAATTGCTCCTGATACGTCGGGGATGAGTT
TCCGCCGCCCAGTAGACCTTGGTTTCGTTAGCACATGGGATGCGCAGCGC
GACGTGTGGAATAGCGTGTTCTCCTGTGATCAGGGAATTGGACTATCGAA
AGCAGAGATGAAGAACAGCAGTTTGATTGTCACGGAACAACTTGGAGTGC
CGATGCACATGCGACGGGCCATGGATGAGTATGTATTTGAATGCTTTGAG
TTCTCCGAATATGCGCCTGTGCCCCCCCAACGGTTAGCTGCTCTGGGCGT
TGGAAAACAAACTTGCCTCGTTCTGGACTCTGGATTTTCGTTCACAACTG
CAGTACCTATTGTCGAAGGACAAGAACTTGGTCATTGTGCAAAAAGGCTC
AAAGTAGGCGGAAAGCTTCTCACGAACTACTTGAGAGAATTGATTACGTA
CCGTTCTTGGAATATGACCGATGAATCAGCCGTGGTTAACGCGGTAAAAG
AGCGTTTGTGTTATCTGTCCTTGAACTACACAAGTGAACTATCAGCCTGT
AAGAAGGGAAGAGGTATCATGAAGGAATACGTTCTCCCTGATCTTACGAG
AACAATGTTTGATCCCGTTGGCCATCTCCTTCAAGAGGGAGAAGAGACGG
ACGGTACGGAGCAAATGCTCAAGATGAATAACGAACGCATCGCGATTCCA
GAGATCTTGTTCAATCCGTCCGATATCGGCCTCAATCAGGCGGGAGTCGC
GGAAACCATCTTTCAGGCGGTAGAAGCGTGTCCTGAAGACGTGCGTGGGG
ACATGTACGAAAACATCATTCTCATGGGGGGCAACTGTTTGTTCCCAAAC
TTTAAAGAGCGGCTTGAAAACGAGCTGAGGCCGTTGGTGGATTCCATTTA
CGAGGTGGAAACCTTTATGGATAAAGAGCCAACGTTAACTGCTTTCAGCG
GAGGCGTACGAGCTGTCGTTGATAATTCTACCTCCGTTCGATATGTGTCC
AGGGAAACGTTCGCAGAGTTGGGTTCCGACGGCATTCTGAGAGAATTGTA
CGGAGATGACATGGAAATCGACTAG

protein sequence of Gvermi12711.t1

>Gvermi12711.t1 ID=Gvermi12711.t1|Name=Gvermi12711.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=425bp
METKVVLDNGGSHIKAAKITAEEFKKIKANGPPPSALCVPNALARPAKNA
VQPPANKLGKSRRPPHFLVGREILIAPDTSGMSFRRPVDLGFVSTWDAQR
DVWNSVFSCDQGIGLSKAEMKNSSLIVTEQLGVPMHMRRAMDEYVFECFE
FSEYAPVPPQRLAALGVGKQTCLVLDSGFSFTTAVPIVEGQELGHCAKRL
KVGGKLLTNYLRELITYRSWNMTDESAVVNAVKERLCYLSLNYTSELSAC
KKGRGIMKEYVLPDLTRTMFDPVGHLLQEGEETDGTEQMLKMNNERIAIP
EILFNPSDIGLNQAGVAETIFQAVEACPEDVRGDMYENIILMGGNCLFPN
FKERLENELRPLVDSIYEVETFMDKEPTLTAFSGGVRAVVDNSTSVRYVS
RETFAELGSDGILRELYGDDMEID*

mRNA from alignment at ScGOVlb_425:1100420..1101694+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12711.t1 ID=Gvermi12711.t1|Name=Gvermi12711.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1275bp|location=Sequence derived from alignment at ScGOVlb_425:1100420..1101694+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAACAAAAGTCGTTTTGGATAATGGCGGCAGCCATATCAAAGCAGC
CAAGATTACCGCTGAGGAGTTCAAGAAGATCAAGGCGAATGGGCCACCAC
CAAGCGCACTATGTGTGCCCAATGCTCTCGCTCGTCCCGCTAAGAATGCT
GTGCAACCTCCGGCAAACAAACTTGGCAAATCCCGACGTCCACCCCATTT
CCTGGTCGGCCGCGAAATCTTAATTGCTCCTGATACGTCGGGGATGAGTT
TCCGCCGCCCAGTAGACCTTGGTTTCGTTAGCACATGGGATGCGCAGCGC
GACGTGTGGAATAGCGTGTTCTCCTGTGATCAGGGAATTGGACTATCGAA
AGCAGAGATGAAGAACAGCAGTTTGATTGTCACGGAACAACTTGGAGTGC
CGATGCACATGCGACGGGCCATGGATGAGTATGTATTTGAATGCTTTGAG
TTCTCCGAATATGCGCCTGTGCCCCCCCAACGGTTAGCTGCTCTGGGCGT
TGGAAAACAAACTTGCCTCGTTCTGGACTCTGGATTTTCGTTCACAACTG
CAGTACCTATTGTCGAAGGACAAGAACTTGGTCATTGTGCAAAAAGGCTC
AAAGTAGGCGGAAAGCTTCTCACGAACTACTTGAGAGAATTGATTACGTA
CCGTTCTTGGAATATGACCGATGAATCAGCCGTGGTTAACGCGGTAAAAG
AGCGTTTGTGTTATCTGTCCTTGAACTACACAAGTGAACTATCAGCCTGT
AAGAAGGGAAGAGGTATCATGAAGGAATACGTTCTCCCTGATCTTACGAG
AACAATGTTTGATCCCGTTGGCCATCTCCTTCAAGAGGGAGAAGAGACGG
ACGGTACGGAGCAAATGCTCAAGATGAATAACGAACGCATCGCGATTCCA
GAGATCTTGTTCAATCCGTCCGATATCGGCCTCAATCAGGCGGGAGTCGC
GGAAACCATCTTTCAGGCGGTAGAAGCGTGTCCTGAAGACGTGCGTGGGG
ACATGTACGAAAACATCATTCTCATGGGGGGCAACTGTTTGTTCCCAAAC
TTTAAAGAGCGGCTTGAAAACGAGCTGAGGCCGTTGGTGGATTCCATTTA
CGAGGTGGAAACCTTTATGGATAAAGAGCCAACGTTAACTGCTTTCAGCG
GAGGCGTACGAGCTGTCGTTGATAATTCTACCTCCGTTCGATATGTGTCC
AGGGAAACGTTCGCAGAGTTGGGTTCCGACGGCATTCTGAGAGAATTGTA
CGGAGATGACATGGAAATCGACTAG

Coding sequence (CDS) from alignment at ScGOVlb_425:1100420..1101694+

>Gvermi12711.t1 ID=Gvermi12711.t1|Name=Gvermi12711.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1275bp|location=Sequence derived from alignment at ScGOVlb_425:1100420..1101694+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAACAAAAGTCGTTTTGGATAATGGCGGCAGCCATATCAAAGCAGC
CAAGATTACCGCTGAGGAGTTCAAGAAGATCAAGGCGAATGGGCCACCAC
CAAGCGCACTATGTGTGCCCAATGCTCTCGCTCGTCCCGCTAAGAATGCT
GTGCAACCTCCGGCAAACAAACTTGGCAAATCCCGACGTCCACCCCATTT
CCTGGTCGGCCGCGAAATCTTAATTGCTCCTGATACGTCGGGGATGAGTT
TCCGCCGCCCAGTAGACCTTGGTTTCGTTAGCACATGGGATGCGCAGCGC
GACGTGTGGAATAGCGTGTTCTCCTGTGATCAGGGAATTGGACTATCGAA
AGCAGAGATGAAGAACAGCAGTTTGATTGTCACGGAACAACTTGGAGTGC
CGATGCACATGCGACGGGCCATGGATGAGTATGTATTTGAATGCTTTGAG
TTCTCCGAATATGCGCCTGTGCCCCCCCAACGGTTAGCTGCTCTGGGCGT
TGGAAAACAAACTTGCCTCGTTCTGGACTCTGGATTTTCGTTCACAACTG
CAGTACCTATTGTCGAAGGACAAGAACTTGGTCATTGTGCAAAAAGGCTC
AAAGTAGGCGGAAAGCTTCTCACGAACTACTTGAGAGAATTGATTACGTA
CCGTTCTTGGAATATGACCGATGAATCAGCCGTGGTTAACGCGGTAAAAG
AGCGTTTGTGTTATCTGTCCTTGAACTACACAAGTGAACTATCAGCCTGT
AAGAAGGGAAGAGGTATCATGAAGGAATACGTTCTCCCTGATCTTACGAG
AACAATGTTTGATCCCGTTGGCCATCTCCTTCAAGAGGGAGAAGAGACGG
ACGGTACGGAGCAAATGCTCAAGATGAATAACGAACGCATCGCGATTCCA
GAGATCTTGTTCAATCCGTCCGATATCGGCCTCAATCAGGCGGGAGTCGC
GGAAACCATCTTTCAGGCGGTAGAAGCGTGTCCTGAAGACGTGCGTGGGG
ACATGTACGAAAACATCATTCTCATGGGGGGCAACTGTTTGTTCCCAAAC
TTTAAAGAGCGGCTTGAAAACGAGCTGAGGCCGTTGGTGGATTCCATTTA
CGAGGTGGAAACCTTTATGGATAAAGAGCCAACGTTAACTGCTTTCAGCG
GAGGCGTACGAGCTGTCGTTGATAATTCTACCTCCGTTCGATATGTGTCC
AGGGAAACGTTCGCAGAGTTGGGTTCCGACGGCATTCTGAGAGAATTGTA
CGGAGATGACATGGAAATCGACTAG