Gvermi12706.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12706.t1
Unique NameGvermi12706.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length316
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1078345..1079292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog626887.J057_20950
Preferred nameetfA
PFAMsETF,ETF_alpha
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K03522
Evalue6.54e-95
EggNOG OGsCOG2025@1|root,COG2025@2|Bacteria,1MUFI@1224|Proteobacteria,1RMK7@1236|Gammaproteobacteria,465NP@72275|Alteromonadaceae
Descriptionelectron transfer flavoprotein, alpha subunit
COG categoryC
BRITEko00000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12706Gvermi12706Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1078345..1079292 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12706.t1.stop1Gvermi12706.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1078345..1078347 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12706.t1.CDS1Gvermi12706.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1078345..1079292 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12706.t1.exon1Gvermi12706.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1078345..1079292 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12706.t1.start1Gvermi12706.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1079290..1079292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12706.t1Gvermi12706.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1078345..1079292 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12706.t1 ID=Gvermi12706.t1|Name=Gvermi12706.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=316bp
MSAKALVVGDTASVAVRSAIQAAKKCVGSGKVDLLLIGKGANAAAEAASQ
WDALSTVYPVEEETPATAESATPVIQQQVLENQYGYLISAANSFGKNVLP
RVAGVLGVSAVSDIIDVVESDVFVRPIYAGNALATVKCTEDVKVLTVRPT
SFEPVEENSGGLADIVKAESCASGVHSRWIGEQTTESAGPELTAAGVVIA
GGRGLKSKENFQMLEEMARELGGAVGATRAAVDSGYVPNDMQVGQTGKVV
APQLYIGVGLSGAIQHLAGMKDSKTIVAINKDADAPIFQVADYGLVADLF
EAVPELLNKIKALPK*
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spliced messenger RNA

>Gvermi12706.t1 ID=Gvermi12706.t1|Name=Gvermi12706.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=948bp|location=Sequence derived from alignment at ScGOVlb_425:1078345..1079292- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCCAAAGCTTTGGTAGTCGGCGACACAGCGTCAGTCGCCGTGCG
CAGCGCAATACAGGCGGCGAAGAAGTGTGTTGGTTCCGGAAAGGTTGATT
TGCTACTCATCGGAAAGGGAGCCAATGCTGCCGCCGAGGCGGCTTCTCAA
TGGGATGCGCTTAGCACCGTGTACCCGGTTGAGGAGGAAACGCCCGCGAC
AGCAGAGTCAGCCACCCCTGTCATTCAGCAACAAGTCCTTGAAAACCAGT
ACGGTTATTTGATTTCTGCTGCAAACTCATTCGGAAAGAATGTCCTGCCC
AGGGTCGCGGGTGTGCTAGGCGTGTCTGCGGTTTCGGACATCATTGATGT
TGTGGAGAGCGACGTGTTTGTGAGGCCCATATATGCTGGGAACGCTCTAG
CAACCGTAAAGTGCACAGAGGATGTTAAGGTTCTAACGGTGCGGCCGACG
TCGTTCGAACCAGTGGAAGAGAACAGTGGTGGTTTGGCGGATATAGTAAA
GGCTGAAAGTTGTGCGTCAGGGGTTCATTCGCGATGGATCGGGGAACAGA
CAACCGAAAGTGCTGGACCGGAATTAACAGCTGCCGGAGTAGTCATCGCT
GGCGGAAGGGGTCTGAAGAGCAAAGAGAACTTTCAAATGCTGGAGGAAAT
GGCCAGAGAGCTGGGGGGGGCAGTAGGCGCGACGCGAGCAGCGGTTGATT
CTGGGTATGTGCCTAACGACATGCAAGTGGGACAAACTGGAAAAGTCGTG
GCGCCACAGCTTTACATTGGTGTTGGACTCAGTGGTGCGATCCAGCACCT
TGCCGGAATGAAGGATTCCAAAACCATAGTGGCTATCAATAAGGATGCTG
ACGCTCCCATCTTCCAGGTGGCGGACTATGGGCTTGTTGCAGATCTTTTT
GAAGCAGTTCCTGAGCTTTTGAACAAGATAAAGGCTCTTCCAAAGTGA
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protein sequence of Gvermi12706.t1

>Gvermi12706.t1 ID=Gvermi12706.t1|Name=Gvermi12706.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=316bp
MSAKALVVGDTASVAVRSAIQAAKKCVGSGKVDLLLIGKGANAAAEAASQ
WDALSTVYPVEEETPATAESATPVIQQQVLENQYGYLISAANSFGKNVLP
RVAGVLGVSAVSDIIDVVESDVFVRPIYAGNALATVKCTEDVKVLTVRPT
SFEPVEENSGGLADIVKAESCASGVHSRWIGEQTTESAGPELTAAGVVIA
GGRGLKSKENFQMLEEMARELGGAVGATRAAVDSGYVPNDMQVGQTGKVV
APQLYIGVGLSGAIQHLAGMKDSKTIVAINKDADAPIFQVADYGLVADLF
EAVPELLNKIKALPK*
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mRNA from alignment at ScGOVlb_425:1078345..1079292-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12706.t1 ID=Gvermi12706.t1|Name=Gvermi12706.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=948bp|location=Sequence derived from alignment at ScGOVlb_425:1078345..1079292- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGCCAAAGCTTTGGTAGTCGGCGACACAGCGTCAGTCGCCGTGCG
CAGCGCAATACAGGCGGCGAAGAAGTGTGTTGGTTCCGGAAAGGTTGATT
TGCTACTCATCGGAAAGGGAGCCAATGCTGCCGCCGAGGCGGCTTCTCAA
TGGGATGCGCTTAGCACCGTGTACCCGGTTGAGGAGGAAACGCCCGCGAC
AGCAGAGTCAGCCACCCCTGTCATTCAGCAACAAGTCCTTGAAAACCAGT
ACGGTTATTTGATTTCTGCTGCAAACTCATTCGGAAAGAATGTCCTGCCC
AGGGTCGCGGGTGTGCTAGGCGTGTCTGCGGTTTCGGACATCATTGATGT
TGTGGAGAGCGACGTGTTTGTGAGGCCCATATATGCTGGGAACGCTCTAG
CAACCGTAAAGTGCACAGAGGATGTTAAGGTTCTAACGGTGCGGCCGACG
TCGTTCGAACCAGTGGAAGAGAACAGTGGTGGTTTGGCGGATATAGTAAA
GGCTGAAAGTTGTGCGTCAGGGGTTCATTCGCGATGGATCGGGGAACAGA
CAACCGAAAGTGCTGGACCGGAATTAACAGCTGCCGGAGTAGTCATCGCT
GGCGGAAGGGGTCTGAAGAGCAAAGAGAACTTTCAAATGCTGGAGGAAAT
GGCCAGAGAGCTGGGGGGGGCAGTAGGCGCGACGCGAGCAGCGGTTGATT
CTGGGTATGTGCCTAACGACATGCAAGTGGGACAAACTGGAAAAGTCGTG
GCGCCACAGCTTTACATTGGTGTTGGACTCAGTGGTGCGATCCAGCACCT
TGCCGGAATGAAGGATTCCAAAACCATAGTGGCTATCAATAAGGATGCTG
ACGCTCCCATCTTCCAGGTGGCGGACTATGGGCTTGTTGCAGATCTTTTT
GAAGCAGTTCCTGAGCTTTTGAACAAGATAAAGGCTCTTCCAAAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1078345..1079292-

>Gvermi12706.t1 ID=Gvermi12706.t1|Name=Gvermi12706.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=948bp|location=Sequence derived from alignment at ScGOVlb_425:1078345..1079292- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGCCAAAGCTTTGGTAGTCGGCGACACAGCGTCAGTCGCCGTGCG
CAGCGCAATACAGGCGGCGAAGAAGTGTGTTGGTTCCGGAAAGGTTGATT
TGCTACTCATCGGAAAGGGAGCCAATGCTGCCGCCGAGGCGGCTTCTCAA
TGGGATGCGCTTAGCACCGTGTACCCGGTTGAGGAGGAAACGCCCGCGAC
AGCAGAGTCAGCCACCCCTGTCATTCAGCAACAAGTCCTTGAAAACCAGT
ACGGTTATTTGATTTCTGCTGCAAACTCATTCGGAAAGAATGTCCTGCCC
AGGGTCGCGGGTGTGCTAGGCGTGTCTGCGGTTTCGGACATCATTGATGT
TGTGGAGAGCGACGTGTTTGTGAGGCCCATATATGCTGGGAACGCTCTAG
CAACCGTAAAGTGCACAGAGGATGTTAAGGTTCTAACGGTGCGGCCGACG
TCGTTCGAACCAGTGGAAGAGAACAGTGGTGGTTTGGCGGATATAGTAAA
GGCTGAAAGTTGTGCGTCAGGGGTTCATTCGCGATGGATCGGGGAACAGA
CAACCGAAAGTGCTGGACCGGAATTAACAGCTGCCGGAGTAGTCATCGCT
GGCGGAAGGGGTCTGAAGAGCAAAGAGAACTTTCAAATGCTGGAGGAAAT
GGCCAGAGAGCTGGGGGGGGCAGTAGGCGCGACGCGAGCAGCGGTTGATT
CTGGGTATGTGCCTAACGACATGCAAGTGGGACAAACTGGAAAAGTCGTG
GCGCCACAGCTTTACATTGGTGTTGGACTCAGTGGTGCGATCCAGCACCT
TGCCGGAATGAAGGATTCCAAAACCATAGTGGCTATCAATAAGGATGCTG
ACGCTCCCATCTTCCAGGTGGCGGACTATGGGCTTGTTGCAGATCTTTTT
GAAGCAGTTCCTGAGCTTTTGAACAAGATAAAGGCTCTTCCAAAGTGA
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