Gvermi12703.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12703.t1
Unique NameGvermi12703.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length505
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1071898..1073412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12703Gvermi12703Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1071898..1073412 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12703.t1.stop1Gvermi12703.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1071898..1071900 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12703.t1.CDS1Gvermi12703.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1071898..1073412 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12703.t1.exon1Gvermi12703.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1071898..1073412 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12703.t1.start1Gvermi12703.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1073410..1073412 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12703.t1Gvermi12703.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1071898..1073412 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12703.t1 ID=Gvermi12703.t1|Name=Gvermi12703.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=505bp
MMHDKPDASVEGLSGVYQLLVNTIGAKQTQHIEIEQVNKRCLHNVSTQLE
ESFAGVTSQITDGLSKTKHIAREVENLPQVMDKERQDLPQRLKFPLLQNI
RQRVMTLIAHLHAATEDPVQLYPRLLCGSIPLDPAKITKFSKQHRVLQQL
NDMDETISLNDRSLSAPPKSSAEVISKVVSSAQRLSDAVLESVNQLAALE
NDFEELKQLGATLSQVKEPIADLLNQEEEMYGIVCRLRRMFSPESDSSES
ASDQEGEAEFGAGIVDTVRCSSKLLDNAAQSRSVVEGSVSKIRSLTGLFA
QQMDSFEQRLEQTCGLLRRLAGVLKQFVANLPRLAREIRQFFVPTGWRAL
VMRPSDDLMSLLAGIDELRETLPDASALQDAASNATAHSKVIEQMTRMKE
HMEELMVIPCKLIDQVQNQQFEAKIVGSVRHTLVSIVDELAVSAGEHVTG
GVGNVLGQMVNGVGNLFPQNKSSSHGSPGANREQKGVFGSLVDEVRGGLL
KAIF*
back to top

spliced messenger RNA

>Gvermi12703.t1 ID=Gvermi12703.t1|Name=Gvermi12703.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1515bp|location=Sequence derived from alignment at ScGOVlb_425:1071898..1073412- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCATGACAAGCCTGATGCCTCTGTTGAAGGTCTGTCTGGGGTGTA
CCAACTCCTGGTCAACACAATTGGCGCCAAGCAAACACAACACATTGAAA
TTGAACAAGTCAACAAAAGATGTTTGCACAACGTTTCAACCCAACTTGAG
GAAAGCTTTGCAGGGGTCACATCTCAGATTACTGACGGCTTGAGCAAAAC
GAAACACATTGCGAGGGAGGTCGAAAACTTACCGCAAGTGATGGACAAGG
AGCGCCAGGATTTGCCTCAAAGATTGAAATTCCCTTTGCTGCAAAACATC
CGCCAGAGAGTCATGACTCTTATCGCCCATCTTCATGCTGCAACAGAGGA
CCCCGTCCAGCTCTACCCTCGGCTTCTTTGCGGTAGTATACCTCTTGACC
CGGCTAAAATAACCAAGTTTTCAAAACAGCACCGCGTTCTCCAGCAACTG
AACGACATGGATGAGACCATATCGCTCAACGATCGCTCGCTGTCTGCCCC
ACCCAAATCCTCTGCAGAAGTGATCTCAAAGGTAGTTTCTTCTGCTCAAC
GCCTTTCGGACGCCGTCCTTGAGTCGGTAAACCAACTGGCAGCCCTTGAG
AACGACTTTGAAGAACTCAAACAACTCGGGGCCACTCTGTCCCAAGTGAA
AGAACCTATCGCTGATCTTTTGAATCAAGAAGAGGAGATGTACGGCATAG
TATGTCGACTGCGCCGAATGTTTTCGCCGGAAAGCGACAGCTCAGAAAGC
GCAAGCGACCAAGAGGGAGAAGCCGAATTCGGTGCTGGAATTGTGGACAC
TGTGCGCTGCAGCTCAAAGCTTCTCGACAATGCCGCACAGAGTCGGAGCG
TCGTGGAGGGTTCTGTTTCGAAGATACGCAGCCTGACGGGGTTGTTTGCG
CAGCAGATGGACTCGTTTGAGCAACGGTTAGAGCAGACTTGCGGTTTGCT
GAGAAGACTTGCTGGAGTGCTGAAACAGTTTGTGGCCAATCTGCCGCGTC
TGGCGCGAGAAATTCGGCAGTTCTTTGTGCCGACGGGGTGGAGAGCGTTG
GTCATGAGACCGTCCGACGATCTGATGAGCCTACTGGCGGGAATCGACGA
GCTGAGGGAGACGCTGCCCGACGCGAGTGCGCTGCAGGACGCGGCCAGCA
ACGCGACTGCGCACAGCAAAGTGATTGAGCAGATGACGAGGATGAAGGAG
CACATGGAGGAACTGATGGTTATCCCGTGCAAGCTGATTGACCAAGTGCA
AAATCAGCAGTTTGAGGCGAAAATCGTTGGCTCTGTGAGACACACGCTGG
TAAGCATCGTCGATGAGCTCGCGGTGTCGGCGGGCGAGCACGTGACGGGG
GGCGTCGGGAACGTGCTCGGACAGATGGTGAACGGGGTCGGAAATTTGTT
TCCGCAAAACAAATCTTCAAGCCATGGCTCGCCTGGCGCAAACAGGGAGC
AGAAAGGAGTCTTCGGCAGCTTGGTAGACGAGGTTCGGGGTGGGTTGCTC
AAGGCAATATTCTAG
back to top

protein sequence of Gvermi12703.t1

>Gvermi12703.t1 ID=Gvermi12703.t1|Name=Gvermi12703.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=505bp
MMHDKPDASVEGLSGVYQLLVNTIGAKQTQHIEIEQVNKRCLHNVSTQLE
ESFAGVTSQITDGLSKTKHIAREVENLPQVMDKERQDLPQRLKFPLLQNI
RQRVMTLIAHLHAATEDPVQLYPRLLCGSIPLDPAKITKFSKQHRVLQQL
NDMDETISLNDRSLSAPPKSSAEVISKVVSSAQRLSDAVLESVNQLAALE
NDFEELKQLGATLSQVKEPIADLLNQEEEMYGIVCRLRRMFSPESDSSES
ASDQEGEAEFGAGIVDTVRCSSKLLDNAAQSRSVVEGSVSKIRSLTGLFA
QQMDSFEQRLEQTCGLLRRLAGVLKQFVANLPRLAREIRQFFVPTGWRAL
VMRPSDDLMSLLAGIDELRETLPDASALQDAASNATAHSKVIEQMTRMKE
HMEELMVIPCKLIDQVQNQQFEAKIVGSVRHTLVSIVDELAVSAGEHVTG
GVGNVLGQMVNGVGNLFPQNKSSSHGSPGANREQKGVFGSLVDEVRGGLL
KAIF*
back to top

mRNA from alignment at ScGOVlb_425:1071898..1073412-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12703.t1 ID=Gvermi12703.t1|Name=Gvermi12703.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1515bp|location=Sequence derived from alignment at ScGOVlb_425:1071898..1073412- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGCATGACAAGCCTGATGCCTCTGTTGAAGGTCTGTCTGGGGTGTA
CCAACTCCTGGTCAACACAATTGGCGCCAAGCAAACACAACACATTGAAA
TTGAACAAGTCAACAAAAGATGTTTGCACAACGTTTCAACCCAACTTGAG
GAAAGCTTTGCAGGGGTCACATCTCAGATTACTGACGGCTTGAGCAAAAC
GAAACACATTGCGAGGGAGGTCGAAAACTTACCGCAAGTGATGGACAAGG
AGCGCCAGGATTTGCCTCAAAGATTGAAATTCCCTTTGCTGCAAAACATC
CGCCAGAGAGTCATGACTCTTATCGCCCATCTTCATGCTGCAACAGAGGA
CCCCGTCCAGCTCTACCCTCGGCTTCTTTGCGGTAGTATACCTCTTGACC
CGGCTAAAATAACCAAGTTTTCAAAACAGCACCGCGTTCTCCAGCAACTG
AACGACATGGATGAGACCATATCGCTCAACGATCGCTCGCTGTCTGCCCC
ACCCAAATCCTCTGCAGAAGTGATCTCAAAGGTAGTTTCTTCTGCTCAAC
GCCTTTCGGACGCCGTCCTTGAGTCGGTAAACCAACTGGCAGCCCTTGAG
AACGACTTTGAAGAACTCAAACAACTCGGGGCCACTCTGTCCCAAGTGAA
AGAACCTATCGCTGATCTTTTGAATCAAGAAGAGGAGATGTACGGCATAG
TATGTCGACTGCGCCGAATGTTTTCGCCGGAAAGCGACAGCTCAGAAAGC
GCAAGCGACCAAGAGGGAGAAGCCGAATTCGGTGCTGGAATTGTGGACAC
TGTGCGCTGCAGCTCAAAGCTTCTCGACAATGCCGCACAGAGTCGGAGCG
TCGTGGAGGGTTCTGTTTCGAAGATACGCAGCCTGACGGGGTTGTTTGCG
CAGCAGATGGACTCGTTTGAGCAACGGTTAGAGCAGACTTGCGGTTTGCT
GAGAAGACTTGCTGGAGTGCTGAAACAGTTTGTGGCCAATCTGCCGCGTC
TGGCGCGAGAAATTCGGCAGTTCTTTGTGCCGACGGGGTGGAGAGCGTTG
GTCATGAGACCGTCCGACGATCTGATGAGCCTACTGGCGGGAATCGACGA
GCTGAGGGAGACGCTGCCCGACGCGAGTGCGCTGCAGGACGCGGCCAGCA
ACGCGACTGCGCACAGCAAAGTGATTGAGCAGATGACGAGGATGAAGGAG
CACATGGAGGAACTGATGGTTATCCCGTGCAAGCTGATTGACCAAGTGCA
AAATCAGCAGTTTGAGGCGAAAATCGTTGGCTCTGTGAGACACACGCTGG
TAAGCATCGTCGATGAGCTCGCGGTGTCGGCGGGCGAGCACGTGACGGGG
GGCGTCGGGAACGTGCTCGGACAGATGGTGAACGGGGTCGGAAATTTGTT
TCCGCAAAACAAATCTTCAAGCCATGGCTCGCCTGGCGCAAACAGGGAGC
AGAAAGGAGTCTTCGGCAGCTTGGTAGACGAGGTTCGGGGTGGGTTGCTC
AAGGCAATATTCTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_425:1071898..1073412-

>Gvermi12703.t1 ID=Gvermi12703.t1|Name=Gvermi12703.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1515bp|location=Sequence derived from alignment at ScGOVlb_425:1071898..1073412- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGCATGACAAGCCTGATGCCTCTGTTGAAGGTCTGTCTGGGGTGTA
CCAACTCCTGGTCAACACAATTGGCGCCAAGCAAACACAACACATTGAAA
TTGAACAAGTCAACAAAAGATGTTTGCACAACGTTTCAACCCAACTTGAG
GAAAGCTTTGCAGGGGTCACATCTCAGATTACTGACGGCTTGAGCAAAAC
GAAACACATTGCGAGGGAGGTCGAAAACTTACCGCAAGTGATGGACAAGG
AGCGCCAGGATTTGCCTCAAAGATTGAAATTCCCTTTGCTGCAAAACATC
CGCCAGAGAGTCATGACTCTTATCGCCCATCTTCATGCTGCAACAGAGGA
CCCCGTCCAGCTCTACCCTCGGCTTCTTTGCGGTAGTATACCTCTTGACC
CGGCTAAAATAACCAAGTTTTCAAAACAGCACCGCGTTCTCCAGCAACTG
AACGACATGGATGAGACCATATCGCTCAACGATCGCTCGCTGTCTGCCCC
ACCCAAATCCTCTGCAGAAGTGATCTCAAAGGTAGTTTCTTCTGCTCAAC
GCCTTTCGGACGCCGTCCTTGAGTCGGTAAACCAACTGGCAGCCCTTGAG
AACGACTTTGAAGAACTCAAACAACTCGGGGCCACTCTGTCCCAAGTGAA
AGAACCTATCGCTGATCTTTTGAATCAAGAAGAGGAGATGTACGGCATAG
TATGTCGACTGCGCCGAATGTTTTCGCCGGAAAGCGACAGCTCAGAAAGC
GCAAGCGACCAAGAGGGAGAAGCCGAATTCGGTGCTGGAATTGTGGACAC
TGTGCGCTGCAGCTCAAAGCTTCTCGACAATGCCGCACAGAGTCGGAGCG
TCGTGGAGGGTTCTGTTTCGAAGATACGCAGCCTGACGGGGTTGTTTGCG
CAGCAGATGGACTCGTTTGAGCAACGGTTAGAGCAGACTTGCGGTTTGCT
GAGAAGACTTGCTGGAGTGCTGAAACAGTTTGTGGCCAATCTGCCGCGTC
TGGCGCGAGAAATTCGGCAGTTCTTTGTGCCGACGGGGTGGAGAGCGTTG
GTCATGAGACCGTCCGACGATCTGATGAGCCTACTGGCGGGAATCGACGA
GCTGAGGGAGACGCTGCCCGACGCGAGTGCGCTGCAGGACGCGGCCAGCA
ACGCGACTGCGCACAGCAAAGTGATTGAGCAGATGACGAGGATGAAGGAG
CACATGGAGGAACTGATGGTTATCCCGTGCAAGCTGATTGACCAAGTGCA
AAATCAGCAGTTTGAGGCGAAAATCGTTGGCTCTGTGAGACACACGCTGG
TAAGCATCGTCGATGAGCTCGCGGTGTCGGCGGGCGAGCACGTGACGGGG
GGCGTCGGGAACGTGCTCGGACAGATGGTGAACGGGGTCGGAAATTTGTT
TCCGCAAAACAAATCTTCAAGCCATGGCTCGCCTGGCGCAAACAGGGAGC
AGAAAGGAGTCTTCGGCAGCTTGGTAGACGAGGTTCGGGGTGGGTTGCTC
AAGGCAATATTCTAG
back to top