Gvermi12698.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12698.t1
Unique Name	Gvermi12698.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	399

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1056831..1058027 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706746.1
PFAMs	ENTH
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K12471
KEGG Pathway	ko04144,map04144
GOs	GO:0000278,GO:0000281,GO:0000331,GO:0000910,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005886,GO:0005905,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0008104,GO:0008150,GO:0008289,GO:0009653,GO:0009987,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0019220,GO:0019222,GO:0022402,GO:0030029,GO:0030036,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030122,GO:0030125,GO:0030128,GO:0030131,GO:0030132,GO:0030135,GO:0030136,GO:0030139,GO:0030154,GO:0030276,GO:0030435,GO:0030659,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0031090,GO:0031323,GO:0031399,GO:0031410,GO:0031982,GO:0032268,GO:0032502,GO:0032991,GO:0033036,GO:0034613,GO:0035091,GO:0035303,GO:0035304,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043934,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045334,GO:0048475,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051174,GO:0051179,GO:0051246,GO:0051301,GO:0051641,GO:0060255,GO:0061640,GO:0065007,GO:0070727,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0080090,GO:0097435,GO:0097708,GO:0098588,GO:0098796,GO:0098797,GO:0098805,GO:1901981,GO:1902936,GO:1903047,GO:1990778
Evalue	4.1e-40
EggNOG OGs	KOG2056@1\|root,KOG2056@2759\|Eukaryota
Description	lipid binding
COG category	T
BRITE	ko00000,ko00001,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12698	Gvermi12698	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1056831..1058027 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12698.t1.start1	Gvermi12698.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1056831..1056833 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12698.t1.CDS1	Gvermi12698.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1056831..1058027 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12698.t1.exon1	Gvermi12698.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1056831..1058027 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12698.t1.stop1	Gvermi12698.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1058025..1058027 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12698.t1	Gvermi12698.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1056831..1058027 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1056831..1058027+
coding sequence from alignment at ScGOVlb_425:1056831..1058027+

mRNA sequence

>Gvermi12698.t1 ID=Gvermi12698.t1|Name=Gvermi12698.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=399bp
MDEISRKIRNIDWKSLQKSARKVQASTASALKDMVMTDLENKTRSATADT
AWGASATDLHQIAGGTYNPQDYALIMSIVWQRLGSSRWRCVYKGLEVLKH
VVMHGSSRCLAEARGAIGHLEALRTYRKVADGRDVGEGVRNRAALLCDML
ADDELLEAEREKSREIRAKIEAGGAGGSVSSEEYRFRNYMNGMNSTVTST
GTATFKGYGDDGGYDEEPAGAFNTLRIEDKKHVDLLGDDEEQTKTHADAA
FDDDDEFDPRGVGNSAVTEAKQEDDLLALALSAPDVAPIPAVPSSNGGMK
TSELIQQLAAQRTSALVPVQPTQPVSETSTLSPPTQTITAQGVQQGMNSG
FAAFDGFGAGMGSPEVKPSVPTPVRLQRKEDADPFGDLLDTAKKSGVV*

spliced messenger RNA

>Gvermi12698.t1 ID=Gvermi12698.t1|Name=Gvermi12698.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1197bp|location=Sequence derived from alignment at ScGOVlb_425:1056831..1058027+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGAAATATCGCGTAAGATACGCAACATAGACTGGAAGTCGTTGCA
AAAGTCTGCTCGAAAGGTTCAGGCTTCTACTGCCTCGGCGTTGAAGGACA
TGGTCATGACAGACCTCGAAAATAAAACACGTTCCGCGACCGCAGACACG
GCGTGGGGAGCATCTGCCACAGACCTCCATCAAATAGCTGGTGGAACATA
TAATCCACAGGACTATGCGCTGATTATGTCCATCGTTTGGCAGCGCCTCG
GCAGTTCTCGTTGGAGATGCGTGTACAAGGGGCTCGAAGTCCTGAAACAT
GTCGTCATGCACGGCAGTTCTCGTTGCTTAGCGGAGGCCAGAGGAGCCAT
CGGGCATTTGGAAGCCCTCCGCACATATCGCAAGGTTGCAGATGGAAGGG
ATGTCGGAGAGGGTGTACGGAATAGAGCCGCCCTACTGTGTGATATGCTT
GCGGATGATGAGCTACTCGAAGCCGAGCGCGAGAAAAGCCGTGAAATTCG
TGCCAAGATTGAAGCGGGAGGGGCTGGTGGCTCTGTCAGCAGCGAGGAAT
ACCGCTTTAGAAATTACATGAACGGAATGAATTCTACGGTAACCTCAACG
GGCACCGCCACTTTCAAAGGCTATGGTGACGACGGTGGTTACGACGAGGA
ACCCGCTGGAGCGTTCAACACGTTACGTATAGAGGATAAGAAGCACGTTG
ATCTTCTTGGCGATGACGAAGAACAGACTAAAACACACGCCGATGCAGCA
TTTGACGATGACGACGAATTTGATCCGCGCGGCGTCGGAAACTCAGCAGT
AACTGAAGCAAAGCAAGAAGATGATCTACTTGCATTAGCGCTTTCTGCAC
CGGATGTCGCGCCCATACCAGCCGTTCCGTCGTCGAATGGTGGCATGAAG
ACCTCAGAACTTATACAACAGCTTGCGGCACAAAGAACAAGCGCGCTAGT
ACCTGTGCAGCCGACGCAGCCGGTAAGTGAGACTAGCACGTTGAGCCCTC
CTACTCAAACTATTACCGCACAAGGCGTCCAGCAAGGAATGAACTCTGGC
TTTGCTGCGTTTGATGGGTTTGGGGCTGGGATGGGGTCACCAGAAGTGAA
GCCGTCTGTCCCGACCCCTGTCAGATTGCAGAGAAAGGAGGATGCTGATC
CATTCGGCGATTTATTGGATACTGCCAAGAAGAGTGGAGTGGTGTAA

protein sequence of Gvermi12698.t1

>Gvermi12698.t1 ID=Gvermi12698.t1|Name=Gvermi12698.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=399bp
MDEISRKIRNIDWKSLQKSARKVQASTASALKDMVMTDLENKTRSATADT
AWGASATDLHQIAGGTYNPQDYALIMSIVWQRLGSSRWRCVYKGLEVLKH
VVMHGSSRCLAEARGAIGHLEALRTYRKVADGRDVGEGVRNRAALLCDML
ADDELLEAEREKSREIRAKIEAGGAGGSVSSEEYRFRNYMNGMNSTVTST
GTATFKGYGDDGGYDEEPAGAFNTLRIEDKKHVDLLGDDEEQTKTHADAA
FDDDDEFDPRGVGNSAVTEAKQEDDLLALALSAPDVAPIPAVPSSNGGMK
TSELIQQLAAQRTSALVPVQPTQPVSETSTLSPPTQTITAQGVQQGMNSG
FAAFDGFGAGMGSPEVKPSVPTPVRLQRKEDADPFGDLLDTAKKSGVV*

mRNA from alignment at ScGOVlb_425:1056831..1058027+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12698.t1 ID=Gvermi12698.t1|Name=Gvermi12698.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1197bp|location=Sequence derived from alignment at ScGOVlb_425:1056831..1058027+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGAAATATCGCGTAAGATACGCAACATAGACTGGAAGTCGTTGCA
AAAGTCTGCTCGAAAGGTTCAGGCTTCTACTGCCTCGGCGTTGAAGGACA
TGGTCATGACAGACCTCGAAAATAAAACACGTTCCGCGACCGCAGACACG
GCGTGGGGAGCATCTGCCACAGACCTCCATCAAATAGCTGGTGGAACATA
TAATCCACAGGACTATGCGCTGATTATGTCCATCGTTTGGCAGCGCCTCG
GCAGTTCTCGTTGGAGATGCGTGTACAAGGGGCTCGAAGTCCTGAAACAT
GTCGTCATGCACGGCAGTTCTCGTTGCTTAGCGGAGGCCAGAGGAGCCAT
CGGGCATTTGGAAGCCCTCCGCACATATCGCAAGGTTGCAGATGGAAGGG
ATGTCGGAGAGGGTGTACGGAATAGAGCCGCCCTACTGTGTGATATGCTT
GCGGATGATGAGCTACTCGAAGCCGAGCGCGAGAAAAGCCGTGAAATTCG
TGCCAAGATTGAAGCGGGAGGGGCTGGTGGCTCTGTCAGCAGCGAGGAAT
ACCGCTTTAGAAATTACATGAACGGAATGAATTCTACGGTAACCTCAACG
GGCACCGCCACTTTCAAAGGCTATGGTGACGACGGTGGTTACGACGAGGA
ACCCGCTGGAGCGTTCAACACGTTACGTATAGAGGATAAGAAGCACGTTG
ATCTTCTTGGCGATGACGAAGAACAGACTAAAACACACGCCGATGCAGCA
TTTGACGATGACGACGAATTTGATCCGCGCGGCGTCGGAAACTCAGCAGT
AACTGAAGCAAAGCAAGAAGATGATCTACTTGCATTAGCGCTTTCTGCAC
CGGATGTCGCGCCCATACCAGCCGTTCCGTCGTCGAATGGTGGCATGAAG
ACCTCAGAACTTATACAACAGCTTGCGGCACAAAGAACAAGCGCGCTAGT
ACCTGTGCAGCCGACGCAGCCGGTAAGTGAGACTAGCACGTTGAGCCCTC
CTACTCAAACTATTACCGCACAAGGCGTCCAGCAAGGAATGAACTCTGGC
TTTGCTGCGTTTGATGGGTTTGGGGCTGGGATGGGGTCACCAGAAGTGAA
GCCGTCTGTCCCGACCCCTGTCAGATTGCAGAGAAAGGAGGATGCTGATC
CATTCGGCGATTTATTGGATACTGCCAAGAAGAGTGGAGTGGTGTAA

Coding sequence (CDS) from alignment at ScGOVlb_425:1056831..1058027+

>Gvermi12698.t1 ID=Gvermi12698.t1|Name=Gvermi12698.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1197bp|location=Sequence derived from alignment at ScGOVlb_425:1056831..1058027+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGAAATATCGCGTAAGATACGCAACATAGACTGGAAGTCGTTGCA
AAAGTCTGCTCGAAAGGTTCAGGCTTCTACTGCCTCGGCGTTGAAGGACA
TGGTCATGACAGACCTCGAAAATAAAACACGTTCCGCGACCGCAGACACG
GCGTGGGGAGCATCTGCCACAGACCTCCATCAAATAGCTGGTGGAACATA
TAATCCACAGGACTATGCGCTGATTATGTCCATCGTTTGGCAGCGCCTCG
GCAGTTCTCGTTGGAGATGCGTGTACAAGGGGCTCGAAGTCCTGAAACAT
GTCGTCATGCACGGCAGTTCTCGTTGCTTAGCGGAGGCCAGAGGAGCCAT
CGGGCATTTGGAAGCCCTCCGCACATATCGCAAGGTTGCAGATGGAAGGG
ATGTCGGAGAGGGTGTACGGAATAGAGCCGCCCTACTGTGTGATATGCTT
GCGGATGATGAGCTACTCGAAGCCGAGCGCGAGAAAAGCCGTGAAATTCG
TGCCAAGATTGAAGCGGGAGGGGCTGGTGGCTCTGTCAGCAGCGAGGAAT
ACCGCTTTAGAAATTACATGAACGGAATGAATTCTACGGTAACCTCAACG
GGCACCGCCACTTTCAAAGGCTATGGTGACGACGGTGGTTACGACGAGGA
ACCCGCTGGAGCGTTCAACACGTTACGTATAGAGGATAAGAAGCACGTTG
ATCTTCTTGGCGATGACGAAGAACAGACTAAAACACACGCCGATGCAGCA
TTTGACGATGACGACGAATTTGATCCGCGCGGCGTCGGAAACTCAGCAGT
AACTGAAGCAAAGCAAGAAGATGATCTACTTGCATTAGCGCTTTCTGCAC
CGGATGTCGCGCCCATACCAGCCGTTCCGTCGTCGAATGGTGGCATGAAG
ACCTCAGAACTTATACAACAGCTTGCGGCACAAAGAACAAGCGCGCTAGT
ACCTGTGCAGCCGACGCAGCCGGTAAGTGAGACTAGCACGTTGAGCCCTC
CTACTCAAACTATTACCGCACAAGGCGTCCAGCAAGGAATGAACTCTGGC
TTTGCTGCGTTTGATGGGTTTGGGGCTGGGATGGGGTCACCAGAAGTGAA
GCCGTCTGTCCCGACCCCTGTCAGATTGCAGAGAAAGGAGGATGCTGATC
CATTCGGCGATTTATTGGATACTGCCAAGAAGAGTGGAGTGGTGTAA