Gvermi12696.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12696.t1
Unique NameGvermi12696.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length570
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1008290..1009999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1123508.JH636452_gene7034
PFAMsAn_peroxidase,Dockerin_1,SdrD_B
Max annot lvl203682|Planctomycetes
Evalue6.16e-78
EggNOG OGsCOG2373@1|root,COG2373@2|Bacteria,2IY3Z@203682|Planctomycetes
DescriptionAnimal haem peroxidase
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12696Gvermi12696Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1008290..1009999 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12696.t1.stop1Gvermi12696.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1008290..1008292 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12696.t1.CDS1Gvermi12696.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1008290..1009999 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12696.t1.exon1Gvermi12696.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1008290..1009999 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12696.t1.start1Gvermi12696.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1009997..1009999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12696.t1Gvermi12696.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1008290..1009999 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12696.t1 ID=Gvermi12696.t1|Name=Gvermi12696.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=570bp
MTTVAVAQSFLFLLWLTVFCPCAFAQPPSLVGRGFPFLLPIAPPNPFDLQ
SSTDSTVHPECAALSVRTLSGRCTSAVDPALGEARRAQSSYLDVDSRYFN
DAGLKSARVVSNIVADQAEDIPSRARINELFVFFGQFIDHDLVSTPVSNE
EVPIAVPADDARLSQSQLSFRRSLRQKVSTMSAKERPISVVSSALDLSQV
YGVDQERNTALRQENSCGMKVSDGDFLPYNKGGFTNSPSNSQAFYLAGDT
RVNEHSMLTCLHTIFVREHNYICSQLQSVPSLASLPPAEQYEMARAINIA
QYQKVIYEEWLPIMLGRNMRRYQGYQSKVDPTISVEFSTAGFRVGHTMIG
NGVSRIDAFGTRTTLSAKDMFFKGSNMKSGDMEDLLRGAMKTRAQQVDTK
TVDALRNFLFSNVNGEEGVDLIALNLQRSRDHNVPRYAELRQFLTGASVR
WFTEISSDAATQGALREAYGRVEDIEAWVGLMAEDNSYFSPMGGTNTALW
QREFERLRDGDRWFYLDEPRHGAIGQRVLNALPLVRAGIFSRVPLMGRIL
RRNTQLPLGDVRPAALFRA*
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spliced messenger RNA

>Gvermi12696.t1 ID=Gvermi12696.t1|Name=Gvermi12696.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1710bp|location=Sequence derived from alignment at ScGOVlb_425:1008290..1009999- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGACCGTAGCGGTGGCGCAGTCGTTTCTGTTTCTGTTGTGGCTCAC
CGTGTTTTGTCCGTGTGCTTTTGCTCAGCCCCCATCTCTGGTCGGACGCG
GATTTCCGTTCTTGCTTCCCATCGCCCCTCCTAATCCATTTGACCTTCAA
TCTTCAACTGACTCAACTGTACACCCTGAATGCGCGGCTCTCTCTGTCAG
AACGCTCTCAGGGCGATGCACATCCGCAGTGGACCCCGCGCTGGGAGAGG
CTCGAAGAGCGCAATCCAGTTACCTTGACGTGGACTCGCGGTATTTCAAC
GATGCTGGATTGAAAAGTGCGCGCGTGGTGTCCAACATCGTGGCGGATCA
GGCAGAAGACATACCGAGCCGAGCGCGCATCAACGAATTGTTCGTGTTCT
TCGGGCAATTTATAGACCACGATTTGGTGTCTACTCCGGTTTCCAACGAA
GAAGTGCCCATCGCCGTGCCGGCGGACGATGCGAGACTTTCACAGTCACA
GCTTTCATTTAGGCGGTCGTTGCGACAGAAGGTGAGCACCATGTCTGCAA
AGGAAAGGCCCATCTCGGTGGTTTCATCCGCGCTGGACCTATCGCAAGTA
TATGGAGTGGACCAAGAGAGGAACACAGCGCTTCGGCAGGAGAACTCTTG
TGGAATGAAGGTGTCGGACGGTGACTTTCTACCGTACAACAAGGGTGGCT
TCACAAACTCTCCCTCCAACTCGCAGGCCTTTTATCTGGCCGGGGACACT
CGGGTGAACGAGCATTCGATGTTGACATGCTTGCACACAATATTTGTGCG
AGAGCATAACTACATCTGTTCGCAGCTGCAGTCTGTACCGTCCCTTGCGT
CTCTACCGCCGGCAGAACAGTACGAGATGGCGCGAGCCATTAACATCGCG
CAGTATCAGAAGGTGATCTACGAAGAGTGGCTGCCGATCATGCTAGGGCG
CAACATGCGCAGGTACCAGGGCTACCAATCGAAGGTGGATCCCACGATAA
GCGTGGAGTTCTCAACGGCTGGGTTCCGCGTGGGGCATACCATGATCGGG
AACGGCGTGAGCCGTATAGATGCGTTTGGCACGCGCACTACACTGTCAGC
AAAGGACATGTTCTTCAAGGGCAGCAACATGAAGTCGGGCGATATGGAAG
ATCTGCTGCGCGGGGCGATGAAGACGCGCGCGCAGCAGGTGGACACGAAG
ACGGTGGACGCTCTGCGCAACTTCCTGTTCTCCAACGTGAACGGCGAGGA
GGGGGTGGACCTCATCGCGCTGAATCTCCAGCGCAGTCGTGACCACAACG
TACCGCGATACGCGGAGCTGCGCCAGTTTCTGACCGGAGCGTCGGTGCGG
TGGTTCACCGAAATCAGCAGCGACGCGGCGACGCAGGGTGCGCTGCGGGA
GGCGTACGGGCGGGTGGAAGACATCGAGGCGTGGGTGGGCCTGATGGCGG
AGGACAACAGCTACTTCTCGCCGATGGGCGGCACCAACACGGCGCTGTGG
CAGCGCGAGTTCGAGCGGCTGCGCGACGGCGACCGATGGTTCTACCTGGA
CGAGCCACGCCACGGGGCGATCGGGCAGCGCGTGCTCAACGCGCTGCCGT
TGGTGCGCGCCGGCATCTTCAGCAGGGTGCCGCTGATGGGGCGCATTCTG
CGGCGCAACACGCAGCTGCCGTTGGGTGACGTGCGCCCCGCCGCGCTGTT
CCGCGCCTGA
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protein sequence of Gvermi12696.t1

>Gvermi12696.t1 ID=Gvermi12696.t1|Name=Gvermi12696.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=570bp
MTTVAVAQSFLFLLWLTVFCPCAFAQPPSLVGRGFPFLLPIAPPNPFDLQ
SSTDSTVHPECAALSVRTLSGRCTSAVDPALGEARRAQSSYLDVDSRYFN
DAGLKSARVVSNIVADQAEDIPSRARINELFVFFGQFIDHDLVSTPVSNE
EVPIAVPADDARLSQSQLSFRRSLRQKVSTMSAKERPISVVSSALDLSQV
YGVDQERNTALRQENSCGMKVSDGDFLPYNKGGFTNSPSNSQAFYLAGDT
RVNEHSMLTCLHTIFVREHNYICSQLQSVPSLASLPPAEQYEMARAINIA
QYQKVIYEEWLPIMLGRNMRRYQGYQSKVDPTISVEFSTAGFRVGHTMIG
NGVSRIDAFGTRTTLSAKDMFFKGSNMKSGDMEDLLRGAMKTRAQQVDTK
TVDALRNFLFSNVNGEEGVDLIALNLQRSRDHNVPRYAELRQFLTGASVR
WFTEISSDAATQGALREAYGRVEDIEAWVGLMAEDNSYFSPMGGTNTALW
QREFERLRDGDRWFYLDEPRHGAIGQRVLNALPLVRAGIFSRVPLMGRIL
RRNTQLPLGDVRPAALFRA*
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mRNA from alignment at ScGOVlb_425:1008290..1009999-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12696.t1 ID=Gvermi12696.t1|Name=Gvermi12696.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1710bp|location=Sequence derived from alignment at ScGOVlb_425:1008290..1009999- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGACCGTAGCGGTGGCGCAGTCGTTTCTGTTTCTGTTGTGGCTCAC
CGTGTTTTGTCCGTGTGCTTTTGCTCAGCCCCCATCTCTGGTCGGACGCG
GATTTCCGTTCTTGCTTCCCATCGCCCCTCCTAATCCATTTGACCTTCAA
TCTTCAACTGACTCAACTGTACACCCTGAATGCGCGGCTCTCTCTGTCAG
AACGCTCTCAGGGCGATGCACATCCGCAGTGGACCCCGCGCTGGGAGAGG
CTCGAAGAGCGCAATCCAGTTACCTTGACGTGGACTCGCGGTATTTCAAC
GATGCTGGATTGAAAAGTGCGCGCGTGGTGTCCAACATCGTGGCGGATCA
GGCAGAAGACATACCGAGCCGAGCGCGCATCAACGAATTGTTCGTGTTCT
TCGGGCAATTTATAGACCACGATTTGGTGTCTACTCCGGTTTCCAACGAA
GAAGTGCCCATCGCCGTGCCGGCGGACGATGCGAGACTTTCACAGTCACA
GCTTTCATTTAGGCGGTCGTTGCGACAGAAGGTGAGCACCATGTCTGCAA
AGGAAAGGCCCATCTCGGTGGTTTCATCCGCGCTGGACCTATCGCAAGTA
TATGGAGTGGACCAAGAGAGGAACACAGCGCTTCGGCAGGAGAACTCTTG
TGGAATGAAGGTGTCGGACGGTGACTTTCTACCGTACAACAAGGGTGGCT
TCACAAACTCTCCCTCCAACTCGCAGGCCTTTTATCTGGCCGGGGACACT
CGGGTGAACGAGCATTCGATGTTGACATGCTTGCACACAATATTTGTGCG
AGAGCATAACTACATCTGTTCGCAGCTGCAGTCTGTACCGTCCCTTGCGT
CTCTACCGCCGGCAGAACAGTACGAGATGGCGCGAGCCATTAACATCGCG
CAGTATCAGAAGGTGATCTACGAAGAGTGGCTGCCGATCATGCTAGGGCG
CAACATGCGCAGGTACCAGGGCTACCAATCGAAGGTGGATCCCACGATAA
GCGTGGAGTTCTCAACGGCTGGGTTCCGCGTGGGGCATACCATGATCGGG
AACGGCGTGAGCCGTATAGATGCGTTTGGCACGCGCACTACACTGTCAGC
AAAGGACATGTTCTTCAAGGGCAGCAACATGAAGTCGGGCGATATGGAAG
ATCTGCTGCGCGGGGCGATGAAGACGCGCGCGCAGCAGGTGGACACGAAG
ACGGTGGACGCTCTGCGCAACTTCCTGTTCTCCAACGTGAACGGCGAGGA
GGGGGTGGACCTCATCGCGCTGAATCTCCAGCGCAGTCGTGACCACAACG
TACCGCGATACGCGGAGCTGCGCCAGTTTCTGACCGGAGCGTCGGTGCGG
TGGTTCACCGAAATCAGCAGCGACGCGGCGACGCAGGGTGCGCTGCGGGA
GGCGTACGGGCGGGTGGAAGACATCGAGGCGTGGGTGGGCCTGATGGCGG
AGGACAACAGCTACTTCTCGCCGATGGGCGGCACCAACACGGCGCTGTGG
CAGCGCGAGTTCGAGCGGCTGCGCGACGGCGACCGATGGTTCTACCTGGA
CGAGCCACGCCACGGGGCGATCGGGCAGCGCGTGCTCAACGCGCTGCCGT
TGGTGCGCGCCGGCATCTTCAGCAGGGTGCCGCTGATGGGGCGCATTCTG
CGGCGCAACACGCAGCTGCCGTTGGGTGACGTGCGCCCCGCCGCGCTGTT
CCGCGCCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1008290..1009999-

>Gvermi12696.t1 ID=Gvermi12696.t1|Name=Gvermi12696.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1710bp|location=Sequence derived from alignment at ScGOVlb_425:1008290..1009999- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGACCGTAGCGGTGGCGCAGTCGTTTCTGTTTCTGTTGTGGCTCAC
CGTGTTTTGTCCGTGTGCTTTTGCTCAGCCCCCATCTCTGGTCGGACGCG
GATTTCCGTTCTTGCTTCCCATCGCCCCTCCTAATCCATTTGACCTTCAA
TCTTCAACTGACTCAACTGTACACCCTGAATGCGCGGCTCTCTCTGTCAG
AACGCTCTCAGGGCGATGCACATCCGCAGTGGACCCCGCGCTGGGAGAGG
CTCGAAGAGCGCAATCCAGTTACCTTGACGTGGACTCGCGGTATTTCAAC
GATGCTGGATTGAAAAGTGCGCGCGTGGTGTCCAACATCGTGGCGGATCA
GGCAGAAGACATACCGAGCCGAGCGCGCATCAACGAATTGTTCGTGTTCT
TCGGGCAATTTATAGACCACGATTTGGTGTCTACTCCGGTTTCCAACGAA
GAAGTGCCCATCGCCGTGCCGGCGGACGATGCGAGACTTTCACAGTCACA
GCTTTCATTTAGGCGGTCGTTGCGACAGAAGGTGAGCACCATGTCTGCAA
AGGAAAGGCCCATCTCGGTGGTTTCATCCGCGCTGGACCTATCGCAAGTA
TATGGAGTGGACCAAGAGAGGAACACAGCGCTTCGGCAGGAGAACTCTTG
TGGAATGAAGGTGTCGGACGGTGACTTTCTACCGTACAACAAGGGTGGCT
TCACAAACTCTCCCTCCAACTCGCAGGCCTTTTATCTGGCCGGGGACACT
CGGGTGAACGAGCATTCGATGTTGACATGCTTGCACACAATATTTGTGCG
AGAGCATAACTACATCTGTTCGCAGCTGCAGTCTGTACCGTCCCTTGCGT
CTCTACCGCCGGCAGAACAGTACGAGATGGCGCGAGCCATTAACATCGCG
CAGTATCAGAAGGTGATCTACGAAGAGTGGCTGCCGATCATGCTAGGGCG
CAACATGCGCAGGTACCAGGGCTACCAATCGAAGGTGGATCCCACGATAA
GCGTGGAGTTCTCAACGGCTGGGTTCCGCGTGGGGCATACCATGATCGGG
AACGGCGTGAGCCGTATAGATGCGTTTGGCACGCGCACTACACTGTCAGC
AAAGGACATGTTCTTCAAGGGCAGCAACATGAAGTCGGGCGATATGGAAG
ATCTGCTGCGCGGGGCGATGAAGACGCGCGCGCAGCAGGTGGACACGAAG
ACGGTGGACGCTCTGCGCAACTTCCTGTTCTCCAACGTGAACGGCGAGGA
GGGGGTGGACCTCATCGCGCTGAATCTCCAGCGCAGTCGTGACCACAACG
TACCGCGATACGCGGAGCTGCGCCAGTTTCTGACCGGAGCGTCGGTGCGG
TGGTTCACCGAAATCAGCAGCGACGCGGCGACGCAGGGTGCGCTGCGGGA
GGCGTACGGGCGGGTGGAAGACATCGAGGCGTGGGTGGGCCTGATGGCGG
AGGACAACAGCTACTTCTCGCCGATGGGCGGCACCAACACGGCGCTGTGG
CAGCGCGAGTTCGAGCGGCTGCGCGACGGCGACCGATGGTTCTACCTGGA
CGAGCCACGCCACGGGGCGATCGGGCAGCGCGTGCTCAACGCGCTGCCGT
TGGTGCGCGCCGGCATCTTCAGCAGGGTGCCGCTGATGGGGCGCATTCTG
CGGCGCAACACGCAGCTGCCGTTGGGTGACGTGCGCCCCGCCGCGCTGTT
CCGCGCCTGA
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