Gvermi12694.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12694.t1
Unique NameGvermi12694.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length564
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:984661..986352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog756272.Plabr_3820
PFAMsAn_peroxidase
Max annot lvl203682|Planctomycetes
Evalue1.76e-94
EggNOG OGsCOG2931@1|root,COG2931@2|Bacteria,2J53M@203682|Planctomycetes
DescriptionAnimal haem peroxidase
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12694Gvermi12694Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 984661..986352 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12694.t1.start1Gvermi12694.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 984661..984663 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12694.t1.CDS1Gvermi12694.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 984661..986352 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12694.t1.exon1Gvermi12694.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 984661..986352 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12694.t1.stop1Gvermi12694.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 986350..986352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12694.t1Gvermi12694.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 984661..986352 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12694.t1 ID=Gvermi12694.t1|Name=Gvermi12694.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=564bp
MNFFALFSILAFSSLVLAQAPPRRGRGANLFNALPPRSTFFSPQSAPITN
LHPECAALTVRTLDGQCTSAVDPTLGQARRPQFSYLNVDSTNFADEGLVS
ARIISNTVCDQTGNTRNSRRLNELFVFFGQFIDHDFALSPLSDVEVEIEV
PENDPHLGVHSLKFERSVRGRVSPSSAVERPITALSSALDLSNVYGIDRE
RNAFLREVDSCRLKTSEGNNLPFNTAGFTNAPSLSRNLYLAGDARANEHP
VLTTIHTIFLREHNNICTLLEEKLPSMTPEDMYEAARAINIAQYQKIIYE
EWLPAMLGRPLLRYTGYKENVDPTISVEFTTAGFRLGHTMVGNGINRIDE
SGRRLPLITMEDMFFRNTNLVPGDIEDFIRGAVGTRAQEVDTLVVDALRN
FLFRNVPEEAGIDLVALNLQRGRDHNVPKYNELRRFFLGFPARSFRDISS
NPTVQSKLAEAYGTVDHVEAWVGLMAEDNRGAAGLGRTNEQLWIREFTRL
RDGDRFFYLDNARHNQMPQEVLRALPEIDIGIFSAKSMFDRILERTTNLN
RHDFSSGINIFRT*
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spliced messenger RNA

>Gvermi12694.t1 ID=Gvermi12694.t1|Name=Gvermi12694.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1692bp|location=Sequence derived from alignment at ScGOVlb_425:984661..986352+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTTCTTCGCGCTTTTCTCGATTCTTGCATTTTCCTCCCTTGTACT
CGCTCAAGCCCCTCCCAGAAGAGGAAGAGGGGCAAATCTGTTCAATGCCC
TACCCCCTCGCAGCACTTTCTTTTCTCCCCAATCTGCACCCATTACAAAC
CTCCATCCAGAATGCGCAGCACTTACCGTCAGGACTCTGGACGGGCAGTG
CACGTCGGCCGTTGATCCAACACTCGGCCAGGCCCGTCGCCCTCAGTTCA
GCTACCTCAATGTCGACTCCACAAACTTTGCTGATGAAGGGCTTGTGAGT
GCGCGTATTATATCCAATACTGTATGTGACCAGACCGGAAACACACGTAA
CTCACGTCGCCTCAACGAACTCTTTGTCTTTTTCGGCCAATTTATCGACC
ATGACTTTGCCTTGTCGCCGCTGTCCGATGTGGAGGTCGAAATTGAAGTA
CCGGAAAATGACCCGCATCTCGGAGTGCACTCTCTCAAGTTTGAACGATC
CGTGCGTGGTCGCGTCAGCCCCTCTTCTGCTGTGGAGCGCCCCATTACTG
CACTTTCTTCAGCACTTGACCTCTCGAATGTTTACGGCATTGACAGAGAA
CGAAACGCCTTCCTTAGAGAGGTCGATTCTTGTCGTCTAAAGACTTCTGA
GGGAAACAATTTGCCATTTAACACAGCTGGATTTACAAATGCTCCTTCCC
TTTCGAGAAACTTGTATCTTGCCGGAGATGCAAGAGCCAATGAACACCCC
GTCCTTACGACGATCCACACAATATTCCTTCGAGAGCACAACAACATTTG
TACTCTCTTAGAAGAGAAATTGCCAAGCATGACTCCGGAGGACATGTATG
AAGCTGCTCGGGCCATCAATATTGCCCAATACCAAAAAATCATTTACGAA
GAGTGGTTGCCAGCTATGCTTGGTCGTCCCTTATTGCGTTATACCGGATA
TAAGGAAAATGTCGACCCCACCATCAGTGTAGAGTTCACTACAGCGGGGT
TCCGTCTCGGACATACAATGGTTGGCAACGGAATAAACAGGATCGATGAA
AGCGGACGGAGACTCCCACTAATCACCATGGAGGATATGTTTTTCCGGAA
CACCAACCTTGTCCCCGGTGACATTGAGGACTTCATCCGAGGCGCCGTAG
GAACTAGAGCCCAAGAGGTGGACACACTGGTTGTTGATGCCCTTCGTAAT
TTCCTATTTAGGAATGTTCCAGAGGAAGCCGGAATTGATTTGGTCGCGCT
CAACTTACAAAGAGGTCGGGATCACAATGTTCCCAAATACAATGAGCTCC
GTCGATTCTTCCTTGGTTTTCCAGCCAGAAGTTTCCGTGATATCAGTTCT
AATCCGACAGTGCAGAGCAAACTTGCGGAAGCTTATGGAACTGTGGACCA
CGTTGAAGCTTGGGTTGGGTTGATGGCTGAAGACAATCGAGGAGCTGCTG
GTCTTGGTCGCACAAATGAACAACTTTGGATCAGAGAATTCACGCGTCTT
CGAGATGGTGATAGATTCTTTTATCTCGACAACGCTCGTCATAATCAGAT
GCCTCAAGAAGTATTGCGAGCTCTTCCTGAAATTGATATCGGTATCTTCT
CAGCTAAGTCAATGTTTGACCGCATCTTGGAACGCACGACAAACCTTAAT
CGTCACGACTTTTCGTCTGGTATTAATATATTCCGGACGTAA
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protein sequence of Gvermi12694.t1

>Gvermi12694.t1 ID=Gvermi12694.t1|Name=Gvermi12694.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=564bp
MNFFALFSILAFSSLVLAQAPPRRGRGANLFNALPPRSTFFSPQSAPITN
LHPECAALTVRTLDGQCTSAVDPTLGQARRPQFSYLNVDSTNFADEGLVS
ARIISNTVCDQTGNTRNSRRLNELFVFFGQFIDHDFALSPLSDVEVEIEV
PENDPHLGVHSLKFERSVRGRVSPSSAVERPITALSSALDLSNVYGIDRE
RNAFLREVDSCRLKTSEGNNLPFNTAGFTNAPSLSRNLYLAGDARANEHP
VLTTIHTIFLREHNNICTLLEEKLPSMTPEDMYEAARAINIAQYQKIIYE
EWLPAMLGRPLLRYTGYKENVDPTISVEFTTAGFRLGHTMVGNGINRIDE
SGRRLPLITMEDMFFRNTNLVPGDIEDFIRGAVGTRAQEVDTLVVDALRN
FLFRNVPEEAGIDLVALNLQRGRDHNVPKYNELRRFFLGFPARSFRDISS
NPTVQSKLAEAYGTVDHVEAWVGLMAEDNRGAAGLGRTNEQLWIREFTRL
RDGDRFFYLDNARHNQMPQEVLRALPEIDIGIFSAKSMFDRILERTTNLN
RHDFSSGINIFRT*
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mRNA from alignment at ScGOVlb_425:984661..986352+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12694.t1 ID=Gvermi12694.t1|Name=Gvermi12694.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1692bp|location=Sequence derived from alignment at ScGOVlb_425:984661..986352+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACTTCTTCGCGCTTTTCTCGATTCTTGCATTTTCCTCCCTTGTACT
CGCTCAAGCCCCTCCCAGAAGAGGAAGAGGGGCAAATCTGTTCAATGCCC
TACCCCCTCGCAGCACTTTCTTTTCTCCCCAATCTGCACCCATTACAAAC
CTCCATCCAGAATGCGCAGCACTTACCGTCAGGACTCTGGACGGGCAGTG
CACGTCGGCCGTTGATCCAACACTCGGCCAGGCCCGTCGCCCTCAGTTCA
GCTACCTCAATGTCGACTCCACAAACTTTGCTGATGAAGGGCTTGTGAGT
GCGCGTATTATATCCAATACTGTATGTGACCAGACCGGAAACACACGTAA
CTCACGTCGCCTCAACGAACTCTTTGTCTTTTTCGGCCAATTTATCGACC
ATGACTTTGCCTTGTCGCCGCTGTCCGATGTGGAGGTCGAAATTGAAGTA
CCGGAAAATGACCCGCATCTCGGAGTGCACTCTCTCAAGTTTGAACGATC
CGTGCGTGGTCGCGTCAGCCCCTCTTCTGCTGTGGAGCGCCCCATTACTG
CACTTTCTTCAGCACTTGACCTCTCGAATGTTTACGGCATTGACAGAGAA
CGAAACGCCTTCCTTAGAGAGGTCGATTCTTGTCGTCTAAAGACTTCTGA
GGGAAACAATTTGCCATTTAACACAGCTGGATTTACAAATGCTCCTTCCC
TTTCGAGAAACTTGTATCTTGCCGGAGATGCAAGAGCCAATGAACACCCC
GTCCTTACGACGATCCACACAATATTCCTTCGAGAGCACAACAACATTTG
TACTCTCTTAGAAGAGAAATTGCCAAGCATGACTCCGGAGGACATGTATG
AAGCTGCTCGGGCCATCAATATTGCCCAATACCAAAAAATCATTTACGAA
GAGTGGTTGCCAGCTATGCTTGGTCGTCCCTTATTGCGTTATACCGGATA
TAAGGAAAATGTCGACCCCACCATCAGTGTAGAGTTCACTACAGCGGGGT
TCCGTCTCGGACATACAATGGTTGGCAACGGAATAAACAGGATCGATGAA
AGCGGACGGAGACTCCCACTAATCACCATGGAGGATATGTTTTTCCGGAA
CACCAACCTTGTCCCCGGTGACATTGAGGACTTCATCCGAGGCGCCGTAG
GAACTAGAGCCCAAGAGGTGGACACACTGGTTGTTGATGCCCTTCGTAAT
TTCCTATTTAGGAATGTTCCAGAGGAAGCCGGAATTGATTTGGTCGCGCT
CAACTTACAAAGAGGTCGGGATCACAATGTTCCCAAATACAATGAGCTCC
GTCGATTCTTCCTTGGTTTTCCAGCCAGAAGTTTCCGTGATATCAGTTCT
AATCCGACAGTGCAGAGCAAACTTGCGGAAGCTTATGGAACTGTGGACCA
CGTTGAAGCTTGGGTTGGGTTGATGGCTGAAGACAATCGAGGAGCTGCTG
GTCTTGGTCGCACAAATGAACAACTTTGGATCAGAGAATTCACGCGTCTT
CGAGATGGTGATAGATTCTTTTATCTCGACAACGCTCGTCATAATCAGAT
GCCTCAAGAAGTATTGCGAGCTCTTCCTGAAATTGATATCGGTATCTTCT
CAGCTAAGTCAATGTTTGACCGCATCTTGGAACGCACGACAAACCTTAAT
CGTCACGACTTTTCGTCTGGTATTAATATATTCCGGACGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:984661..986352+

>Gvermi12694.t1 ID=Gvermi12694.t1|Name=Gvermi12694.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1692bp|location=Sequence derived from alignment at ScGOVlb_425:984661..986352+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACTTCTTCGCGCTTTTCTCGATTCTTGCATTTTCCTCCCTTGTACT
CGCTCAAGCCCCTCCCAGAAGAGGAAGAGGGGCAAATCTGTTCAATGCCC
TACCCCCTCGCAGCACTTTCTTTTCTCCCCAATCTGCACCCATTACAAAC
CTCCATCCAGAATGCGCAGCACTTACCGTCAGGACTCTGGACGGGCAGTG
CACGTCGGCCGTTGATCCAACACTCGGCCAGGCCCGTCGCCCTCAGTTCA
GCTACCTCAATGTCGACTCCACAAACTTTGCTGATGAAGGGCTTGTGAGT
GCGCGTATTATATCCAATACTGTATGTGACCAGACCGGAAACACACGTAA
CTCACGTCGCCTCAACGAACTCTTTGTCTTTTTCGGCCAATTTATCGACC
ATGACTTTGCCTTGTCGCCGCTGTCCGATGTGGAGGTCGAAATTGAAGTA
CCGGAAAATGACCCGCATCTCGGAGTGCACTCTCTCAAGTTTGAACGATC
CGTGCGTGGTCGCGTCAGCCCCTCTTCTGCTGTGGAGCGCCCCATTACTG
CACTTTCTTCAGCACTTGACCTCTCGAATGTTTACGGCATTGACAGAGAA
CGAAACGCCTTCCTTAGAGAGGTCGATTCTTGTCGTCTAAAGACTTCTGA
GGGAAACAATTTGCCATTTAACACAGCTGGATTTACAAATGCTCCTTCCC
TTTCGAGAAACTTGTATCTTGCCGGAGATGCAAGAGCCAATGAACACCCC
GTCCTTACGACGATCCACACAATATTCCTTCGAGAGCACAACAACATTTG
TACTCTCTTAGAAGAGAAATTGCCAAGCATGACTCCGGAGGACATGTATG
AAGCTGCTCGGGCCATCAATATTGCCCAATACCAAAAAATCATTTACGAA
GAGTGGTTGCCAGCTATGCTTGGTCGTCCCTTATTGCGTTATACCGGATA
TAAGGAAAATGTCGACCCCACCATCAGTGTAGAGTTCACTACAGCGGGGT
TCCGTCTCGGACATACAATGGTTGGCAACGGAATAAACAGGATCGATGAA
AGCGGACGGAGACTCCCACTAATCACCATGGAGGATATGTTTTTCCGGAA
CACCAACCTTGTCCCCGGTGACATTGAGGACTTCATCCGAGGCGCCGTAG
GAACTAGAGCCCAAGAGGTGGACACACTGGTTGTTGATGCCCTTCGTAAT
TTCCTATTTAGGAATGTTCCAGAGGAAGCCGGAATTGATTTGGTCGCGCT
CAACTTACAAAGAGGTCGGGATCACAATGTTCCCAAATACAATGAGCTCC
GTCGATTCTTCCTTGGTTTTCCAGCCAGAAGTTTCCGTGATATCAGTTCT
AATCCGACAGTGCAGAGCAAACTTGCGGAAGCTTATGGAACTGTGGACCA
CGTTGAAGCTTGGGTTGGGTTGATGGCTGAAGACAATCGAGGAGCTGCTG
GTCTTGGTCGCACAAATGAACAACTTTGGATCAGAGAATTCACGCGTCTT
CGAGATGGTGATAGATTCTTTTATCTCGACAACGCTCGTCATAATCAGAT
GCCTCAAGAAGTATTGCGAGCTCTTCCTGAAATTGATATCGGTATCTTCT
CAGCTAAGTCAATGTTTGACCGCATCTTGGAACGCACGACAAACCTTAAT
CGTCACGACTTTTCGTCTGGTATTAATATATTCCGGACGTAA
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