Gvermi12687.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12687.t2
Unique NameGvermi12687.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length639
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:886917..888833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12687Gvermi12687Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 886917..888833 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12687.t2.stop1Gvermi12687.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 886917..886919 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12687.t2.CDS1Gvermi12687.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 886917..888833 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12687.t2.exon1Gvermi12687.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 886917..888833 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12687.t2.start1Gvermi12687.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 888831..888833 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12687.t2Gvermi12687.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 886917..888833 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12687.t2 ID=Gvermi12687.t2|Name=Gvermi12687.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=639bp
MFAFLRLNPLRLLRREKLRPDPPPEEQLIELRTVVDDLQQSLSNSQADVH
NLRAQLQKRDEDAMKLRELVAQLRAQHKHVADALAASESARDSLDVQLAN
EKQEHGVTQQKLTADTAALEARLRTAEAEMAAQSAAAVKLNAALAERELT
IVARDNAAKEADHHAAQRLTALQHDKDHLEADVAKLRDHLAHVEIERDRL
DAEGAELREELHLAKTELEDWAREMKIMDDAPLDETPSSQEANGAVEMEG
NSSASAVAGIDADQDEHIDDGHVSFNQHDNAQLPSDPIAELPADAIVESK
ETSLEQVTMDAATYEKPDDIAPEHADDELEASVDVAEQQTMDTLSQRKPE
DVAQVEEEDSGQVTGNSAEVVSKGDGTKLISDDDAAHKTVSVPAEMASDA
LAEMNEEEGVQAKEVDAEKMPTHNPTEVKTGDDNPEVVEDATEVAADVFP
EPETIDASQIPEASSANVTAHTVADVGSEAVAEMKVEDDVAKNVDAEQIS
SDTYADVKSDNDPLEKEGATPMDVETGEERKVNNGEQKYPHDEVPEQTDE
SEQVTIVDAENITMGKVDDNEQGVTNDSALGKKEDDIMANSDPVLVVETN
DDPALETNDGIKEASDDAEQKMEVEASPMTPEADGKVG*
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spliced messenger RNA

>Gvermi12687.t2 ID=Gvermi12687.t2|Name=Gvermi12687.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1917bp|location=Sequence derived from alignment at ScGOVlb_425:886917..888833- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGCCTTTTTGAGGCTGAACCCGCTGCGGCTGTTGCGCCGGGAGAA
GCTGCGACCCGACCCCCCGCCGGAAGAGCAGCTGATTGAGCTTCGCACCG
TCGTCGACGACCTGCAGCAATCGCTATCCAACTCCCAAGCCGACGTGCAC
AACCTTCGCGCCCAGCTGCAGAAGCGCGACGAAGACGCCATGAAACTCCG
CGAGCTTGTAGCGCAGCTTCGCGCGCAACACAAGCACGTAGCCGATGCGC
TCGCCGCCAGTGAGAGTGCACGCGACTCCTTGGATGTGCAGCTTGCCAAC
GAGAAGCAAGAGCACGGCGTCACCCAGCAGAAACTGACCGCGGACACCGC
CGCATTGGAGGCGCGTTTGCGCACTGCCGAAGCGGAAATGGCTGCGCAGA
GCGCCGCGGCGGTCAAGTTGAACGCTGCGCTGGCTGAACGCGAACTCACC
ATTGTGGCACGCGATAACGCTGCAAAGGAGGCGGACCATCACGCCGCACA
ACGTTTAACCGCACTACAGCATGACAAAGACCACCTGGAGGCCGACGTGG
CCAAGCTTCGCGACCACCTGGCTCACGTAGAAATTGAGCGCGACCGGCTT
GACGCCGAAGGCGCCGAGCTCCGCGAGGAACTGCATCTAGCCAAGACCGA
GCTGGAGGATTGGGCGCGCGAGATGAAAATCATGGACGACGCTCCGCTCG
ACGAAACGCCCTCCTCGCAAGAAGCGAATGGTGCCGTGGAGATGGAAGGC
AATAGTTCTGCGTCCGCAGTCGCAGGCATCGATGCAGACCAAGATGAGCA
TATAGATGACGGTCATGTGTCTTTCAATCAACACGATAACGCACAGCTCC
CGTCAGACCCCATCGCCGAGCTGCCGGCTGATGCAATCGTAGAATCAAAG
GAGACCAGCCTTGAACAAGTCACAATGGACGCCGCCACGTATGAAAAGCC
GGACGACATTGCGCCCGAGCACGCAGATGATGAACTGGAAGCATCAGTAG
ATGTTGCGGAGCAGCAAACCATGGATACTCTATCACAGCGGAAACCAGAA
GATGTGGCTCAAGTAGAAGAGGAGGATTCAGGGCAAGTGACAGGGAATAG
TGCTGAAGTTGTGTCGAAAGGCGATGGGACAAAATTGATCAGCGACGATG
ATGCAGCGCATAAAACTGTGAGTGTCCCAGCGGAGATGGCGTCAGATGCT
TTAGCAGAGATGAACGAAGAAGAGGGCGTGCAGGCGAAAGAGGTTGATGC
CGAGAAAATGCCAACGCACAATCCCACAGAAGTGAAGACAGGAGACGATA
ACCCTGAGGTGGTCGAGGATGCTACTGAAGTGGCGGCAGATGTGTTCCCA
GAGCCGGAAACAATTGATGCTTCTCAAATACCGGAGGCCAGTTCTGCGAA
TGTGACCGCACATACTGTAGCAGATGTAGGGTCAGAAGCCGTCGCAGAAA
TGAAAGTTGAAGACGACGTTGCGAAGAACGTCGATGCCGAGCAAATTTCT
TCGGATACGTATGCGGATGTAAAATCAGACAATGACCCACTAGAGAAAGA
AGGAGCCACACCCATGGATGTAGAGACTGGTGAAGAGAGAAAAGTAAACA
ATGGCGAGCAGAAGTATCCGCATGATGAAGTTCCGGAGCAGACAGACGAA
AGCGAGCAGGTGACGATCGTTGACGCAGAGAATATTACAATGGGGAAGGT
AGACGACAATGAACAAGGTGTGACAAACGATTCAGCGCTAGGAAAGAAAG
AAGATGACATAATGGCGAATAGTGATCCTGTATTGGTGGTGGAGACCAAC
GATGACCCCGCACTGGAGACAAACGATGGAATCAAAGAGGCGTCAGATGA
TGCTGAACAAAAGATGGAGGTCGAAGCCTCACCGATGACGCCAGAGGCTG
ACGGAAAGGTGGGGTGA
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protein sequence of Gvermi12687.t2

>Gvermi12687.t2 ID=Gvermi12687.t2|Name=Gvermi12687.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=639bp
MFAFLRLNPLRLLRREKLRPDPPPEEQLIELRTVVDDLQQSLSNSQADVH
NLRAQLQKRDEDAMKLRELVAQLRAQHKHVADALAASESARDSLDVQLAN
EKQEHGVTQQKLTADTAALEARLRTAEAEMAAQSAAAVKLNAALAERELT
IVARDNAAKEADHHAAQRLTALQHDKDHLEADVAKLRDHLAHVEIERDRL
DAEGAELREELHLAKTELEDWAREMKIMDDAPLDETPSSQEANGAVEMEG
NSSASAVAGIDADQDEHIDDGHVSFNQHDNAQLPSDPIAELPADAIVESK
ETSLEQVTMDAATYEKPDDIAPEHADDELEASVDVAEQQTMDTLSQRKPE
DVAQVEEEDSGQVTGNSAEVVSKGDGTKLISDDDAAHKTVSVPAEMASDA
LAEMNEEEGVQAKEVDAEKMPTHNPTEVKTGDDNPEVVEDATEVAADVFP
EPETIDASQIPEASSANVTAHTVADVGSEAVAEMKVEDDVAKNVDAEQIS
SDTYADVKSDNDPLEKEGATPMDVETGEERKVNNGEQKYPHDEVPEQTDE
SEQVTIVDAENITMGKVDDNEQGVTNDSALGKKEDDIMANSDPVLVVETN
DDPALETNDGIKEASDDAEQKMEVEASPMTPEADGKVG*
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mRNA from alignment at ScGOVlb_425:886917..888833-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12687.t2 ID=Gvermi12687.t2|Name=Gvermi12687.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1917bp|location=Sequence derived from alignment at ScGOVlb_425:886917..888833- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTGCCTTTTTGAGGCTGAACCCGCTGCGGCTGTTGCGCCGGGAGAA
GCTGCGACCCGACCCCCCGCCGGAAGAGCAGCTGATTGAGCTTCGCACCG
TCGTCGACGACCTGCAGCAATCGCTATCCAACTCCCAAGCCGACGTGCAC
AACCTTCGCGCCCAGCTGCAGAAGCGCGACGAAGACGCCATGAAACTCCG
CGAGCTTGTAGCGCAGCTTCGCGCGCAACACAAGCACGTAGCCGATGCGC
TCGCCGCCAGTGAGAGTGCACGCGACTCCTTGGATGTGCAGCTTGCCAAC
GAGAAGCAAGAGCACGGCGTCACCCAGCAGAAACTGACCGCGGACACCGC
CGCATTGGAGGCGCGTTTGCGCACTGCCGAAGCGGAAATGGCTGCGCAGA
GCGCCGCGGCGGTCAAGTTGAACGCTGCGCTGGCTGAACGCGAACTCACC
ATTGTGGCACGCGATAACGCTGCAAAGGAGGCGGACCATCACGCCGCACA
ACGTTTAACCGCACTACAGCATGACAAAGACCACCTGGAGGCCGACGTGG
CCAAGCTTCGCGACCACCTGGCTCACGTAGAAATTGAGCGCGACCGGCTT
GACGCCGAAGGCGCCGAGCTCCGCGAGGAACTGCATCTAGCCAAGACCGA
GCTGGAGGATTGGGCGCGCGAGATGAAAATCATGGACGACGCTCCGCTCG
ACGAAACGCCCTCCTCGCAAGAAGCGAATGGTGCCGTGGAGATGGAAGGC
AATAGTTCTGCGTCCGCAGTCGCAGGCATCGATGCAGACCAAGATGAGCA
TATAGATGACGGTCATGTGTCTTTCAATCAACACGATAACGCACAGCTCC
CGTCAGACCCCATCGCCGAGCTGCCGGCTGATGCAATCGTAGAATCAAAG
GAGACCAGCCTTGAACAAGTCACAATGGACGCCGCCACGTATGAAAAGCC
GGACGACATTGCGCCCGAGCACGCAGATGATGAACTGGAAGCATCAGTAG
ATGTTGCGGAGCAGCAAACCATGGATACTCTATCACAGCGGAAACCAGAA
GATGTGGCTCAAGTAGAAGAGGAGGATTCAGGGCAAGTGACAGGGAATAG
TGCTGAAGTTGTGTCGAAAGGCGATGGGACAAAATTGATCAGCGACGATG
ATGCAGCGCATAAAACTGTGAGTGTCCCAGCGGAGATGGCGTCAGATGCT
TTAGCAGAGATGAACGAAGAAGAGGGCGTGCAGGCGAAAGAGGTTGATGC
CGAGAAAATGCCAACGCACAATCCCACAGAAGTGAAGACAGGAGACGATA
ACCCTGAGGTGGTCGAGGATGCTACTGAAGTGGCGGCAGATGTGTTCCCA
GAGCCGGAAACAATTGATGCTTCTCAAATACCGGAGGCCAGTTCTGCGAA
TGTGACCGCACATACTGTAGCAGATGTAGGGTCAGAAGCCGTCGCAGAAA
TGAAAGTTGAAGACGACGTTGCGAAGAACGTCGATGCCGAGCAAATTTCT
TCGGATACGTATGCGGATGTAAAATCAGACAATGACCCACTAGAGAAAGA
AGGAGCCACACCCATGGATGTAGAGACTGGTGAAGAGAGAAAAGTAAACA
ATGGCGAGCAGAAGTATCCGCATGATGAAGTTCCGGAGCAGACAGACGAA
AGCGAGCAGGTGACGATCGTTGACGCAGAGAATATTACAATGGGGAAGGT
AGACGACAATGAACAAGGTGTGACAAACGATTCAGCGCTAGGAAAGAAAG
AAGATGACATAATGGCGAATAGTGATCCTGTATTGGTGGTGGAGACCAAC
GATGACCCCGCACTGGAGACAAACGATGGAATCAAAGAGGCGTCAGATGA
TGCTGAACAAAAGATGGAGGTCGAAGCCTCACCGATGACGCCAGAGGCTG
ACGGAAAGGTGGGGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:886917..888833-

>Gvermi12687.t2 ID=Gvermi12687.t2|Name=Gvermi12687.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1917bp|location=Sequence derived from alignment at ScGOVlb_425:886917..888833- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTGCCTTTTTGAGGCTGAACCCGCTGCGGCTGTTGCGCCGGGAGAA
GCTGCGACCCGACCCCCCGCCGGAAGAGCAGCTGATTGAGCTTCGCACCG
TCGTCGACGACCTGCAGCAATCGCTATCCAACTCCCAAGCCGACGTGCAC
AACCTTCGCGCCCAGCTGCAGAAGCGCGACGAAGACGCCATGAAACTCCG
CGAGCTTGTAGCGCAGCTTCGCGCGCAACACAAGCACGTAGCCGATGCGC
TCGCCGCCAGTGAGAGTGCACGCGACTCCTTGGATGTGCAGCTTGCCAAC
GAGAAGCAAGAGCACGGCGTCACCCAGCAGAAACTGACCGCGGACACCGC
CGCATTGGAGGCGCGTTTGCGCACTGCCGAAGCGGAAATGGCTGCGCAGA
GCGCCGCGGCGGTCAAGTTGAACGCTGCGCTGGCTGAACGCGAACTCACC
ATTGTGGCACGCGATAACGCTGCAAAGGAGGCGGACCATCACGCCGCACA
ACGTTTAACCGCACTACAGCATGACAAAGACCACCTGGAGGCCGACGTGG
CCAAGCTTCGCGACCACCTGGCTCACGTAGAAATTGAGCGCGACCGGCTT
GACGCCGAAGGCGCCGAGCTCCGCGAGGAACTGCATCTAGCCAAGACCGA
GCTGGAGGATTGGGCGCGCGAGATGAAAATCATGGACGACGCTCCGCTCG
ACGAAACGCCCTCCTCGCAAGAAGCGAATGGTGCCGTGGAGATGGAAGGC
AATAGTTCTGCGTCCGCAGTCGCAGGCATCGATGCAGACCAAGATGAGCA
TATAGATGACGGTCATGTGTCTTTCAATCAACACGATAACGCACAGCTCC
CGTCAGACCCCATCGCCGAGCTGCCGGCTGATGCAATCGTAGAATCAAAG
GAGACCAGCCTTGAACAAGTCACAATGGACGCCGCCACGTATGAAAAGCC
GGACGACATTGCGCCCGAGCACGCAGATGATGAACTGGAAGCATCAGTAG
ATGTTGCGGAGCAGCAAACCATGGATACTCTATCACAGCGGAAACCAGAA
GATGTGGCTCAAGTAGAAGAGGAGGATTCAGGGCAAGTGACAGGGAATAG
TGCTGAAGTTGTGTCGAAAGGCGATGGGACAAAATTGATCAGCGACGATG
ATGCAGCGCATAAAACTGTGAGTGTCCCAGCGGAGATGGCGTCAGATGCT
TTAGCAGAGATGAACGAAGAAGAGGGCGTGCAGGCGAAAGAGGTTGATGC
CGAGAAAATGCCAACGCACAATCCCACAGAAGTGAAGACAGGAGACGATA
ACCCTGAGGTGGTCGAGGATGCTACTGAAGTGGCGGCAGATGTGTTCCCA
GAGCCGGAAACAATTGATGCTTCTCAAATACCGGAGGCCAGTTCTGCGAA
TGTGACCGCACATACTGTAGCAGATGTAGGGTCAGAAGCCGTCGCAGAAA
TGAAAGTTGAAGACGACGTTGCGAAGAACGTCGATGCCGAGCAAATTTCT
TCGGATACGTATGCGGATGTAAAATCAGACAATGACCCACTAGAGAAAGA
AGGAGCCACACCCATGGATGTAGAGACTGGTGAAGAGAGAAAAGTAAACA
ATGGCGAGCAGAAGTATCCGCATGATGAAGTTCCGGAGCAGACAGACGAA
AGCGAGCAGGTGACGATCGTTGACGCAGAGAATATTACAATGGGGAAGGT
AGACGACAATGAACAAGGTGTGACAAACGATTCAGCGCTAGGAAAGAAAG
AAGATGACATAATGGCGAATAGTGATCCTGTATTGGTGGTGGAGACCAAC
GATGACCCCGCACTGGAGACAAACGATGGAATCAAAGAGGCGTCAGATGA
TGCTGAACAAAAGATGGAGGTCGAAGCCTCACCGATGACGCCAGAGGCTG
ACGGAAAGGTGGGGTGA
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