Gvermi12686.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12686.t1
Unique NameGvermi12686.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length444
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:828108..829439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog756272.Plabr_3820
PFAMsAn_peroxidase
Max annot lvl203682|Planctomycetes
Evalue6.23e-82
EggNOG OGsCOG2931@1|root,COG2931@2|Bacteria,2J53M@203682|Planctomycetes
DescriptionAnimal haem peroxidase
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12686Gvermi12686Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 828108..829439 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12686.t1.stop1Gvermi12686.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 828108..828110 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12686.t1.CDS1Gvermi12686.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 828108..829439 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12686.t1.exon1Gvermi12686.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 828108..829439 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12686.t1.start1Gvermi12686.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 829437..829439 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12686.t1Gvermi12686.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 828108..829439 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12686.t1 ID=Gvermi12686.t1|Name=Gvermi12686.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=444bp
LNELFVFFGQFIDHDFALSPLSDVQVEIEVPENDPDLRVHSLRFERSVRG
LVSDASGAERPISSISSALDLSNVYGVDEERNTFLRVPNSCRLKTSDGNN
LPFNTGGFANAPSLSAALYIAGDTRVNEHPVLTTMHTIFLREHNNICGLM
EDALPDMTPESMYEAARAINIAQYQKIIYEEWLPAILGRPLPPYTGYKDN
VDPTISVEFTTAGFRLGHTMVGNGVSRIDESGQRLPLITMDQMFFRDSNL
APGDVENFIRGAAGTRAQEVDALVVDALRNFLFSNVPEEAGIDLIALNLQ
RSRDHNVPRFNELRRFFLGSPATAFRQISSDLDVQNKLEQAYGTIDNVEA
WVGLMAEDKRGSAGLGRTNEQLWKTEFIRLRDGDRFFYLDNARHNQIPRN
VLDALPEVERSIFSGQSMFHRVLTRTTILKHRDVSSGINVFRA*
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spliced messenger RNA

>Gvermi12686.t1 ID=Gvermi12686.t1|Name=Gvermi12686.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1332bp|location=Sequence derived from alignment at ScGOVlb_425:828108..829439- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGAACGAACTATTCGTTTTCTTTGGTCAGTTCATCGATCATGATTTTGC
CTTATCGCCGCTGTCTGATGTGCAGGTTGAAATCGAAGTGCCGGAGAATG
ATCCGGATCTTAGGGTTCACTCCTTGAGATTTGAGCGTTCGGTTCGTGGG
CTCGTCAGCGACGCCTCGGGTGCGGAGCGCCCTATTTCCTCCATTTCTTC
TGCTCTGGACCTCTCCAACGTTTACGGCGTTGACGAGGAGCGCAATACCT
TCTTAAGAGTCCCCAATTCGTGTCGCCTTAAGACTTCTGATGGAAACAAC
TTGCCTTTCAACACTGGAGGCTTTGCAAATGCCCCTTCCCTTTCCGCCGC
ACTTTACATTGCTGGAGATACCCGAGTCAATGAGCACCCCGTCCTCACGA
CAATGCACACCATCTTTCTTCGTGAGCACAACAACATCTGTGGCCTGATG
GAGGATGCACTGCCGGACATGACCCCTGAAAGCATGTACGAGGCGGCCCG
CGCCATCAACATTGCCCAGTATCAAAAAATCATCTATGAGGAATGGCTGC
CGGCAATTCTCGGCCGTCCGCTACCACCCTACACCGGATACAAGGACAAC
GTTGACCCTACCATCAGTGTAGAGTTCACTACAGCAGGGTTTCGTCTTGG
ACACACCATGGTCGGAAACGGCGTTAGCAGAATCGATGAGAGTGGCCAGC
GACTTCCACTCATCACCATGGACCAAATGTTCTTCCGTGACAGCAACCTT
GCTCCCGGTGACGTTGAAAACTTTATCCGAGGTGCTGCTGGAACAAGAGC
TCAGGAAGTAGATGCGCTCGTTGTCGATGCTCTGCGAAATTTTCTGTTCA
GTAATGTTCCAGAAGAAGCCGGAATCGACTTGATTGCGCTCAACCTACAG
AGAAGCCGAGATCACAACGTCCCGCGATTCAACGAGCTCCGCCGATTTTT
TCTTGGTTCACCAGCTACCGCGTTCCGCCAAATCAGTTCCGACCTTGATG
TACAAAACAAACTTGAGCAAGCCTATGGAACTATAGACAACGTTGAAGCC
TGGGTTGGATTGATGGCGGAAGACAAACGTGGTTCTGCTGGGTTGGGTCG
CACAAACGAGCAGCTCTGGAAGACAGAGTTCATACGGCTCCGTGATGGAG
ACAGATTCTTCTACCTTGATAACGCCCGACACAACCAGATCCCTCGCAAC
GTGTTGGATGCGCTTCCAGAAGTTGAACGCTCCATTTTTAGTGGTCAGTC
CATGTTTCACCGCGTACTCACTCGCACTACCATCCTCAAACATCGGGATG
TTTCCTCCGGCATCAACGTCTTCCGAGCGTGA
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protein sequence of Gvermi12686.t1

>Gvermi12686.t1 ID=Gvermi12686.t1|Name=Gvermi12686.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=444bp
LNELFVFFGQFIDHDFALSPLSDVQVEIEVPENDPDLRVHSLRFERSVRG
LVSDASGAERPISSISSALDLSNVYGVDEERNTFLRVPNSCRLKTSDGNN
LPFNTGGFANAPSLSAALYIAGDTRVNEHPVLTTMHTIFLREHNNICGLM
EDALPDMTPESMYEAARAINIAQYQKIIYEEWLPAILGRPLPPYTGYKDN
VDPTISVEFTTAGFRLGHTMVGNGVSRIDESGQRLPLITMDQMFFRDSNL
APGDVENFIRGAAGTRAQEVDALVVDALRNFLFSNVPEEAGIDLIALNLQ
RSRDHNVPRFNELRRFFLGSPATAFRQISSDLDVQNKLEQAYGTIDNVEA
WVGLMAEDKRGSAGLGRTNEQLWKTEFIRLRDGDRFFYLDNARHNQIPRN
VLDALPEVERSIFSGQSMFHRVLTRTTILKHRDVSSGINVFRA*
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mRNA from alignment at ScGOVlb_425:828108..829439-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12686.t1 ID=Gvermi12686.t1|Name=Gvermi12686.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1332bp|location=Sequence derived from alignment at ScGOVlb_425:828108..829439- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGAACGAACTATTCGTTTTCTTTGGTCAGTTCATCGATCATGATTTTGC
CTTATCGCCGCTGTCTGATGTGCAGGTTGAAATCGAAGTGCCGGAGAATG
ATCCGGATCTTAGGGTTCACTCCTTGAGATTTGAGCGTTCGGTTCGTGGG
CTCGTCAGCGACGCCTCGGGTGCGGAGCGCCCTATTTCCTCCATTTCTTC
TGCTCTGGACCTCTCCAACGTTTACGGCGTTGACGAGGAGCGCAATACCT
TCTTAAGAGTCCCCAATTCGTGTCGCCTTAAGACTTCTGATGGAAACAAC
TTGCCTTTCAACACTGGAGGCTTTGCAAATGCCCCTTCCCTTTCCGCCGC
ACTTTACATTGCTGGAGATACCCGAGTCAATGAGCACCCCGTCCTCACGA
CAATGCACACCATCTTTCTTCGTGAGCACAACAACATCTGTGGCCTGATG
GAGGATGCACTGCCGGACATGACCCCTGAAAGCATGTACGAGGCGGCCCG
CGCCATCAACATTGCCCAGTATCAAAAAATCATCTATGAGGAATGGCTGC
CGGCAATTCTCGGCCGTCCGCTACCACCCTACACCGGATACAAGGACAAC
GTTGACCCTACCATCAGTGTAGAGTTCACTACAGCAGGGTTTCGTCTTGG
ACACACCATGGTCGGAAACGGCGTTAGCAGAATCGATGAGAGTGGCCAGC
GACTTCCACTCATCACCATGGACCAAATGTTCTTCCGTGACAGCAACCTT
GCTCCCGGTGACGTTGAAAACTTTATCCGAGGTGCTGCTGGAACAAGAGC
TCAGGAAGTAGATGCGCTCGTTGTCGATGCTCTGCGAAATTTTCTGTTCA
GTAATGTTCCAGAAGAAGCCGGAATCGACTTGATTGCGCTCAACCTACAG
AGAAGCCGAGATCACAACGTCCCGCGATTCAACGAGCTCCGCCGATTTTT
TCTTGGTTCACCAGCTACCGCGTTCCGCCAAATCAGTTCCGACCTTGATG
TACAAAACAAACTTGAGCAAGCCTATGGAACTATAGACAACGTTGAAGCC
TGGGTTGGATTGATGGCGGAAGACAAACGTGGTTCTGCTGGGTTGGGTCG
CACAAACGAGCAGCTCTGGAAGACAGAGTTCATACGGCTCCGTGATGGAG
ACAGATTCTTCTACCTTGATAACGCCCGACACAACCAGATCCCTCGCAAC
GTGTTGGATGCGCTTCCAGAAGTTGAACGCTCCATTTTTAGTGGTCAGTC
CATGTTTCACCGCGTACTCACTCGCACTACCATCCTCAAACATCGGGATG
TTTCCTCCGGCATCAACGTCTTCCGAGCGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:828108..829439-

>Gvermi12686.t1 ID=Gvermi12686.t1|Name=Gvermi12686.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1332bp|location=Sequence derived from alignment at ScGOVlb_425:828108..829439- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGAACGAACTATTCGTTTTCTTTGGTCAGTTCATCGATCATGATTTTGC
CTTATCGCCGCTGTCTGATGTGCAGGTTGAAATCGAAGTGCCGGAGAATG
ATCCGGATCTTAGGGTTCACTCCTTGAGATTTGAGCGTTCGGTTCGTGGG
CTCGTCAGCGACGCCTCGGGTGCGGAGCGCCCTATTTCCTCCATTTCTTC
TGCTCTGGACCTCTCCAACGTTTACGGCGTTGACGAGGAGCGCAATACCT
TCTTAAGAGTCCCCAATTCGTGTCGCCTTAAGACTTCTGATGGAAACAAC
TTGCCTTTCAACACTGGAGGCTTTGCAAATGCCCCTTCCCTTTCCGCCGC
ACTTTACATTGCTGGAGATACCCGAGTCAATGAGCACCCCGTCCTCACGA
CAATGCACACCATCTTTCTTCGTGAGCACAACAACATCTGTGGCCTGATG
GAGGATGCACTGCCGGACATGACCCCTGAAAGCATGTACGAGGCGGCCCG
CGCCATCAACATTGCCCAGTATCAAAAAATCATCTATGAGGAATGGCTGC
CGGCAATTCTCGGCCGTCCGCTACCACCCTACACCGGATACAAGGACAAC
GTTGACCCTACCATCAGTGTAGAGTTCACTACAGCAGGGTTTCGTCTTGG
ACACACCATGGTCGGAAACGGCGTTAGCAGAATCGATGAGAGTGGCCAGC
GACTTCCACTCATCACCATGGACCAAATGTTCTTCCGTGACAGCAACCTT
GCTCCCGGTGACGTTGAAAACTTTATCCGAGGTGCTGCTGGAACAAGAGC
TCAGGAAGTAGATGCGCTCGTTGTCGATGCTCTGCGAAATTTTCTGTTCA
GTAATGTTCCAGAAGAAGCCGGAATCGACTTGATTGCGCTCAACCTACAG
AGAAGCCGAGATCACAACGTCCCGCGATTCAACGAGCTCCGCCGATTTTT
TCTTGGTTCACCAGCTACCGCGTTCCGCCAAATCAGTTCCGACCTTGATG
TACAAAACAAACTTGAGCAAGCCTATGGAACTATAGACAACGTTGAAGCC
TGGGTTGGATTGATGGCGGAAGACAAACGTGGTTCTGCTGGGTTGGGTCG
CACAAACGAGCAGCTCTGGAAGACAGAGTTCATACGGCTCCGTGATGGAG
ACAGATTCTTCTACCTTGATAACGCCCGACACAACCAGATCCCTCGCAAC
GTGTTGGATGCGCTTCCAGAAGTTGAACGCTCCATTTTTAGTGGTCAGTC
CATGTTTCACCGCGTACTCACTCGCACTACCATCCTCAAACATCGGGATG
TTTCCTCCGGCATCAACGTCTTCCGAGCGTGA
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