Gvermi12683.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12683.t1
Unique NameGvermi12683.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length247
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:820451..821191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9778.XP_004381505.1
Preferred nameCOL6A6
PFAMsCollagen,VWA
Max annot lvl33208|Metazoa
KEGG koko:K06236,ko:K06238,ko:K19720
KEGG Pathwayko04151,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,map04151,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165
GOsGO:0005575,GO:0005576,GO:0031012,GO:0044421
Evalue2.81e-05
EggNOG OGsKOG1217@1|root,KOG3544@1|root,KOG1217@2759|Eukaryota,KOG3544@2759|Eukaryota,38DGH@33154|Opisthokonta,3BA28@33208|Metazoa,3CSUY@33213|Bilateria,4858V@7711|Chordata,48UTA@7742|Vertebrata,3J5P8@40674|Mammalia,3530Y@311790|Afrotheria
DescriptionCollagen alpha-6(VI) chain
COG categoryW
BRITEko00000,ko00001,ko00536,ko04147,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12683Gvermi12683Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 820451..821191 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12683.t1.stop1Gvermi12683.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 820451..820453 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12683.t1.CDS1Gvermi12683.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 820451..821191 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12683.t1.exon1Gvermi12683.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 820451..821191 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12683.t1.start1Gvermi12683.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 821189..821191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12683.t1Gvermi12683.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 820451..821191 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12683.t1 ID=Gvermi12683.t1|Name=Gvermi12683.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=247bp
MFRLFTILCASLFFTLVFATVSTDSATRRVDEVDTPLTEGAPQQAEVQAA
IDIVTATNCNPNICFAVDGSGSMNDAEFKLELDFVKLVAAVISLDPESKF
AGIQYGLRPRFISMLTDNAGQFLLDVDKTVHMKAPRTFIAPGIAGCWRQL
MRVPNQPWKIVILGDGDSNFDALAPPLDPATIAQNFLANPNATISAVGVG
DYQVASMLEGIAGSADRVFTADEWMNVIFVLADLVADVCGVSAVEF*
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spliced messenger RNA

>Gvermi12683.t1 ID=Gvermi12683.t1|Name=Gvermi12683.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=741bp|location=Sequence derived from alignment at ScGOVlb_425:820451..821191- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCGCCTTTTTACTATACTCTGTGCATCATTGTTTTTCACTTTGGT
CTTTGCCACGGTTTCAACTGATAGTGCCACTCGCCGCGTGGATGAGGTTG
ATACACCTCTCACAGAGGGTGCTCCTCAGCAAGCCGAGGTCCAAGCCGCT
ATTGATATCGTGACTGCAACAAACTGCAACCCCAACATTTGTTTTGCAGT
TGACGGAAGTGGGTCTATGAACGATGCCGAATTCAAGTTGGAATTGGACT
TTGTCAAATTAGTCGCCGCAGTTATTTCTCTTGACCCCGAATCCAAATTC
GCTGGTATTCAGTACGGGCTTCGCCCGAGATTTATCAGTATGCTCACCGA
CAACGCCGGTCAATTCCTACTTGACGTGGACAAGACTGTGCATATGAAAG
CTCCGAGAACTTTCATTGCTCCAGGCATCGCTGGTTGCTGGAGACAGCTG
ATGAGAGTCCCGAATCAGCCGTGGAAGATTGTCATTCTTGGTGACGGTGA
CAGCAACTTTGATGCATTGGCTCCGCCACTTGATCCGGCTACTATCGCTC
AAAACTTCCTAGCAAACCCCAACGCCACCATATCCGCTGTTGGAGTGGGC
GACTACCAGGTTGCAAGTATGCTTGAAGGGATCGCCGGTTCAGCAGACAG
AGTTTTCACTGCTGATGAATGGATGAATGTCATCTTTGTTCTCGCTGATC
TTGTGGCAGATGTTTGCGGTGTTTCTGCTGTAGAGTTTTAA
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protein sequence of Gvermi12683.t1

>Gvermi12683.t1 ID=Gvermi12683.t1|Name=Gvermi12683.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=247bp
MFRLFTILCASLFFTLVFATVSTDSATRRVDEVDTPLTEGAPQQAEVQAA
IDIVTATNCNPNICFAVDGSGSMNDAEFKLELDFVKLVAAVISLDPESKF
AGIQYGLRPRFISMLTDNAGQFLLDVDKTVHMKAPRTFIAPGIAGCWRQL
MRVPNQPWKIVILGDGDSNFDALAPPLDPATIAQNFLANPNATISAVGVG
DYQVASMLEGIAGSADRVFTADEWMNVIFVLADLVADVCGVSAVEF*
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mRNA from alignment at ScGOVlb_425:820451..821191-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12683.t1 ID=Gvermi12683.t1|Name=Gvermi12683.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=741bp|location=Sequence derived from alignment at ScGOVlb_425:820451..821191- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCCGCCTTTTTACTATACTCTGTGCATCATTGTTTTTCACTTTGGT
CTTTGCCACGGTTTCAACTGATAGTGCCACTCGCCGCGTGGATGAGGTTG
ATACACCTCTCACAGAGGGTGCTCCTCAGCAAGCCGAGGTCCAAGCCGCT
ATTGATATCGTGACTGCAACAAACTGCAACCCCAACATTTGTTTTGCAGT
TGACGGAAGTGGGTCTATGAACGATGCCGAATTCAAGTTGGAATTGGACT
TTGTCAAATTAGTCGCCGCAGTTATTTCTCTTGACCCCGAATCCAAATTC
GCTGGTATTCAGTACGGGCTTCGCCCGAGATTTATCAGTATGCTCACCGA
CAACGCCGGTCAATTCCTACTTGACGTGGACAAGACTGTGCATATGAAAG
CTCCGAGAACTTTCATTGCTCCAGGCATCGCTGGTTGCTGGAGACAGCTG
ATGAGAGTCCCGAATCAGCCGTGGAAGATTGTCATTCTTGGTGACGGTGA
CAGCAACTTTGATGCATTGGCTCCGCCACTTGATCCGGCTACTATCGCTC
AAAACTTCCTAGCAAACCCCAACGCCACCATATCCGCTGTTGGAGTGGGC
GACTACCAGGTTGCAAGTATGCTTGAAGGGATCGCCGGTTCAGCAGACAG
AGTTTTCACTGCTGATGAATGGATGAATGTCATCTTTGTTCTCGCTGATC
TTGTGGCAGATGTTTGCGGTGTTTCTGCTGTAGAGTTTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:820451..821191-

>Gvermi12683.t1 ID=Gvermi12683.t1|Name=Gvermi12683.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=741bp|location=Sequence derived from alignment at ScGOVlb_425:820451..821191- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCCGCCTTTTTACTATACTCTGTGCATCATTGTTTTTCACTTTGGT
CTTTGCCACGGTTTCAACTGATAGTGCCACTCGCCGCGTGGATGAGGTTG
ATACACCTCTCACAGAGGGTGCTCCTCAGCAAGCCGAGGTCCAAGCCGCT
ATTGATATCGTGACTGCAACAAACTGCAACCCCAACATTTGTTTTGCAGT
TGACGGAAGTGGGTCTATGAACGATGCCGAATTCAAGTTGGAATTGGACT
TTGTCAAATTAGTCGCCGCAGTTATTTCTCTTGACCCCGAATCCAAATTC
GCTGGTATTCAGTACGGGCTTCGCCCGAGATTTATCAGTATGCTCACCGA
CAACGCCGGTCAATTCCTACTTGACGTGGACAAGACTGTGCATATGAAAG
CTCCGAGAACTTTCATTGCTCCAGGCATCGCTGGTTGCTGGAGACAGCTG
ATGAGAGTCCCGAATCAGCCGTGGAAGATTGTCATTCTTGGTGACGGTGA
CAGCAACTTTGATGCATTGGCTCCGCCACTTGATCCGGCTACTATCGCTC
AAAACTTCCTAGCAAACCCCAACGCCACCATATCCGCTGTTGGAGTGGGC
GACTACCAGGTTGCAAGTATGCTTGAAGGGATCGCCGGTTCAGCAGACAG
AGTTTTCACTGCTGATGAATGGATGAATGTCATCTTTGTTCTCGCTGATC
TTGTGGCAGATGTTTGCGGTGTTTCTGCTGTAGAGTTTTAA
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