Gvermi12678.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12678.t1
Unique NameGvermi12678.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length173
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:651714..652232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1123322.KB904691_gene4323
PFAMsRibonuc_L-PSP
Max annot lvl2|Bacteria
Evalue1.78e-12
EggNOG OGsCOG0251@1|root,COG0251@2|Bacteria
Descriptionoxidation-reduction process
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12678Gvermi12678Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 651714..652232 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12678.t1.stop1Gvermi12678.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 651714..651716 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12678.t1.CDS1Gvermi12678.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 651714..652232 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12678.t1.exon1Gvermi12678.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 651714..652232 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12678.t1.start1Gvermi12678.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 652230..652232 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12678.t1Gvermi12678.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 651714..652232 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12678.t1 ID=Gvermi12678.t1|Name=Gvermi12678.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=173bp
MHVRSSSVILALFFVLHAAPADAYCRRRQRSRLVIVNPPTLFDPVPFGFS
QIVVDTRNAVAHVAGQSARNQTGFLVGETLTQQLEQTFRNLALALEAVEA
DLSDLLKAIVVIVDLDPNTAEDVLAASAIGFGGPAPPAILFASDSLLEPG
VLVEIQVDVAVPESFIRRLVCY*
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spliced messenger RNA

>Gvermi12678.t1 ID=Gvermi12678.t1|Name=Gvermi12678.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=519bp|location=Sequence derived from alignment at ScGOVlb_425:651714..652232- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATGTTCGCTCCTCTTCAGTTATACTTGCATTATTCTTCGTACTTCA
CGCTGCACCCGCCGACGCTTATTGCCGACGGCGACAAAGAAGCCGTCTCG
TGATTGTCAATCCGCCCACTCTTTTCGACCCAGTTCCTTTCGGGTTTTCT
CAAATTGTCGTTGATACAAGAAACGCCGTTGCCCATGTCGCCGGACAAAG
TGCAAGGAACCAAACGGGTTTTTTAGTTGGTGAAACTTTGACGCAGCAGT
TGGAACAAACCTTTCGCAACCTCGCGCTGGCGTTGGAAGCTGTTGAAGCC
GATTTGAGCGACCTATTGAAAGCTATTGTTGTCATAGTGGACCTTGATCC
AAACACTGCCGAGGATGTACTTGCGGCAAGTGCAATTGGCTTCGGAGGTC
CAGCCCCGCCAGCAATATTGTTTGCTTCTGACTCGCTCCTGGAACCAGGC
GTGCTTGTTGAAATTCAAGTTGACGTAGCTGTTCCCGAATCGTTCATAAG
GCGTCTAGTGTGTTATTAG
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protein sequence of Gvermi12678.t1

>Gvermi12678.t1 ID=Gvermi12678.t1|Name=Gvermi12678.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=173bp
MHVRSSSVILALFFVLHAAPADAYCRRRQRSRLVIVNPPTLFDPVPFGFS
QIVVDTRNAVAHVAGQSARNQTGFLVGETLTQQLEQTFRNLALALEAVEA
DLSDLLKAIVVIVDLDPNTAEDVLAASAIGFGGPAPPAILFASDSLLEPG
VLVEIQVDVAVPESFIRRLVCY*
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mRNA from alignment at ScGOVlb_425:651714..652232-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12678.t1 ID=Gvermi12678.t1|Name=Gvermi12678.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=519bp|location=Sequence derived from alignment at ScGOVlb_425:651714..652232- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATGTTCGCTCCTCTTCAGTTATACTTGCATTATTCTTCGTACTTCA
CGCTGCACCCGCCGACGCTTATTGCCGACGGCGACAAAGAAGCCGTCTCG
TGATTGTCAATCCGCCCACTCTTTTCGACCCAGTTCCTTTCGGGTTTTCT
CAAATTGTCGTTGATACAAGAAACGCCGTTGCCCATGTCGCCGGACAAAG
TGCAAGGAACCAAACGGGTTTTTTAGTTGGTGAAACTTTGACGCAGCAGT
TGGAACAAACCTTTCGCAACCTCGCGCTGGCGTTGGAAGCTGTTGAAGCC
GATTTGAGCGACCTATTGAAAGCTATTGTTGTCATAGTGGACCTTGATCC
AAACACTGCCGAGGATGTACTTGCGGCAAGTGCAATTGGCTTCGGAGGTC
CAGCCCCGCCAGCAATATTGTTTGCTTCTGACTCGCTCCTGGAACCAGGC
GTGCTTGTTGAAATTCAAGTTGACGTAGCTGTTCCCGAATCGTTCATAAG
GCGTCTAGTGTGTTATTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:651714..652232-

>Gvermi12678.t1 ID=Gvermi12678.t1|Name=Gvermi12678.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=519bp|location=Sequence derived from alignment at ScGOVlb_425:651714..652232- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATGTTCGCTCCTCTTCAGTTATACTTGCATTATTCTTCGTACTTCA
CGCTGCACCCGCCGACGCTTATTGCCGACGGCGACAAAGAAGCCGTCTCG
TGATTGTCAATCCGCCCACTCTTTTCGACCCAGTTCCTTTCGGGTTTTCT
CAAATTGTCGTTGATACAAGAAACGCCGTTGCCCATGTCGCCGGACAAAG
TGCAAGGAACCAAACGGGTTTTTTAGTTGGTGAAACTTTGACGCAGCAGT
TGGAACAAACCTTTCGCAACCTCGCGCTGGCGTTGGAAGCTGTTGAAGCC
GATTTGAGCGACCTATTGAAAGCTATTGTTGTCATAGTGGACCTTGATCC
AAACACTGCCGAGGATGTACTTGCGGCAAGTGCAATTGGCTTCGGAGGTC
CAGCCCCGCCAGCAATATTGTTTGCTTCTGACTCGCTCCTGGAACCAGGC
GTGCTTGTTGAAATTCAAGTTGACGTAGCTGTTCCCGAATCGTTCATAAG
GCGTCTAGTGTGTTATTAG
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