Gvermi12670.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12670.t1
Unique NameGvermi12670.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length543
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:270365..271993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1174528.JH992892_gene6388
PFAMsGMC_oxred_C,GMC_oxred_N
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00087
KEGG koko:K00108
KEGG ReactionR01025
KEGG Pathwayko00260,ko01100,map00260,map01100
KEGG ModuleM00555
Evalue5.94e-34
EggNOG OGsCOG2303@1|root,COG2303@2|Bacteria,1FZYZ@1117|Cyanobacteria,1JJ6F@1189|Stigonemataceae
EC1.1.99.1
DescriptionGMC oxidoreductase
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12670Gvermi12670Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 270365..271993 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12670.t1.stop1Gvermi12670.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 270365..270367 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12670.t1.CDS1Gvermi12670.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 270365..271993 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12670.t1.exon1Gvermi12670.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 270365..271993 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12670.t1.start1Gvermi12670.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 271991..271993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12670.t1Gvermi12670.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 270365..271993 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12670.t1 ID=Gvermi12670.t1|Name=Gvermi12670.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=543bp
MCSIFPLFLLLTVFTVILALVKAQQTTDFLIVGGGTAGCVLASKLCTAFP
NQRITVIERGLPRTPASNFRVQAPRNLFSVLSDRSVAELIPSLPDVGINS
RGVDAVTGSTLGGSTAINGMQWTVPFPGTVEQWGVHNLTTTLADTYFRSI
YDKVGFGPPQNPLQYADEYVQAGIDSGFELSQDPFEQPFRSIWQTRLSIT
SSFRRNDACSAYLTPVLQTSCSRNINLMQGLTVSKIVFQRTTNSTVPTEP
PSLKAVAVDTVPSPNSFQQAQRINVSKEILVTAGPYNSPKLLQLSGIGLK
SVLEAASVPQILNLPVGEATICRASGTIPSTYTGVPDEPANNQTLINSPE
ARQQWEAGSGGILGTPVSAANGRAGTDAYFGSTLVPFVPGPPEVRSACYH
NTETTGYLRIRDSNPFSPPLVKYNLLSSQQDVQRLTNCLKDMADLHRKFP
PQFQMSFMYPPNGEITEGYVRSVAQWGAHFVGGCPIGDVLEGDFKVKGVH
NLRVIDASAIRSMPVSAGPMASVYMLAELMGDRLVDQYKLAL*
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spliced messenger RNA

>Gvermi12670.t1 ID=Gvermi12670.t1|Name=Gvermi12670.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1629bp|location=Sequence derived from alignment at ScGOVlb_425:270365..271993- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCTCTATTTTTCCCCTATTCCTATTATTAACAGTCTTCACTGTGAT
CCTCGCTTTAGTGAAAGCCCAGCAAACAACGGACTTCCTCATAGTTGGTG
GCGGTACAGCTGGCTGTGTTCTTGCTTCGAAGCTGTGCACAGCGTTTCCA
AATCAACGCATCACCGTCATAGAACGCGGCCTTCCAAGAACCCCCGCCTC
CAACTTCCGGGTACAAGCCCCGAGAAACCTCTTCTCTGTGCTTTCAGACC
GTTCCGTCGCCGAACTCATTCCCTCTCTTCCCGACGTTGGCATCAACTCA
CGTGGCGTGGATGCTGTGACCGGCTCTACGTTGGGAGGCTCTACTGCTAT
CAATGGCATGCAATGGACTGTTCCCTTTCCTGGTACAGTTGAGCAATGGG
GTGTCCATAACCTCACCACTACTCTCGCAGACACATACTTTCGTTCGATC
TACGACAAGGTGGGGTTTGGTCCGCCTCAGAATCCTCTTCAATACGCAGA
TGAGTATGTGCAAGCAGGAATCGACTCTGGCTTTGAATTGAGTCAGGATC
CGTTTGAGCAACCATTTCGCTCAATCTGGCAGACACGCCTTTCCATTACT
AGCTCCTTTCGACGTAATGACGCTTGCTCTGCCTATCTCACCCCTGTTCT
TCAGACAAGCTGCTCTCGAAACATCAACTTAATGCAAGGCCTCACCGTGT
CGAAAATCGTTTTTCAACGCACTACGAACTCTACCGTTCCGACAGAACCT
CCCTCTCTAAAAGCTGTGGCCGTGGACACGGTCCCCTCCCCAAACAGTTT
CCAACAGGCACAGCGCATTAACGTATCAAAGGAAATCCTTGTCACAGCTG
GTCCGTACAATTCTCCAAAATTGTTGCAACTCTCCGGCATTGGACTAAAG
TCTGTGCTTGAAGCAGCTAGTGTTCCCCAAATTCTCAATCTGCCTGTAGG
GGAGGCAACAATCTGCAGAGCCTCCGGCACCATACCTTCCACGTATACAG
GTGTTCCGGATGAACCAGCAAACAACCAGACTCTAATTAACTCTCCTGAA
GCTCGTCAGCAATGGGAAGCGGGCTCCGGGGGTATCCTTGGAACGCCAGT
TTCGGCGGCGAATGGTCGTGCCGGTACAGATGCATATTTTGGCTCCACTC
TGGTTCCCTTCGTTCCAGGTCCTCCTGAAGTTCGTTCCGCCTGCTACCAC
AACACCGAAACGACTGGTTATCTACGCATTCGTGACTCGAATCCATTCAG
TCCTCCGCTAGTCAAGTACAATCTACTTTCTTCGCAGCAAGATGTGCAAC
GACTGACAAACTGCTTGAAAGACATGGCTGATCTACATCGCAAGTTTCCG
CCGCAGTTTCAAATGTCTTTTATGTACCCGCCCAACGGGGAGATTACAGA
GGGATATGTAAGAAGTGTAGCGCAGTGGGGGGCACATTTTGTGGGTGGAT
GTCCGATTGGGGACGTTTTGGAAGGCGACTTTAAAGTAAAGGGTGTGCAT
AATTTGAGGGTGATAGATGCATCTGCTATTCGCTCGATGCCAGTCTCTGC
AGGACCTATGGCTTCTGTATACATGTTGGCTGAGTTAATGGGGGACAGAC
TCGTTGATCAATATAAGCTAGCTCTATGA
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protein sequence of Gvermi12670.t1

>Gvermi12670.t1 ID=Gvermi12670.t1|Name=Gvermi12670.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=543bp
MCSIFPLFLLLTVFTVILALVKAQQTTDFLIVGGGTAGCVLASKLCTAFP
NQRITVIERGLPRTPASNFRVQAPRNLFSVLSDRSVAELIPSLPDVGINS
RGVDAVTGSTLGGSTAINGMQWTVPFPGTVEQWGVHNLTTTLADTYFRSI
YDKVGFGPPQNPLQYADEYVQAGIDSGFELSQDPFEQPFRSIWQTRLSIT
SSFRRNDACSAYLTPVLQTSCSRNINLMQGLTVSKIVFQRTTNSTVPTEP
PSLKAVAVDTVPSPNSFQQAQRINVSKEILVTAGPYNSPKLLQLSGIGLK
SVLEAASVPQILNLPVGEATICRASGTIPSTYTGVPDEPANNQTLINSPE
ARQQWEAGSGGILGTPVSAANGRAGTDAYFGSTLVPFVPGPPEVRSACYH
NTETTGYLRIRDSNPFSPPLVKYNLLSSQQDVQRLTNCLKDMADLHRKFP
PQFQMSFMYPPNGEITEGYVRSVAQWGAHFVGGCPIGDVLEGDFKVKGVH
NLRVIDASAIRSMPVSAGPMASVYMLAELMGDRLVDQYKLAL*
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mRNA from alignment at ScGOVlb_425:270365..271993-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12670.t1 ID=Gvermi12670.t1|Name=Gvermi12670.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1629bp|location=Sequence derived from alignment at ScGOVlb_425:270365..271993- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCTCTATTTTTCCCCTATTCCTATTATTAACAGTCTTCACTGTGAT
CCTCGCTTTAGTGAAAGCCCAGCAAACAACGGACTTCCTCATAGTTGGTG
GCGGTACAGCTGGCTGTGTTCTTGCTTCGAAGCTGTGCACAGCGTTTCCA
AATCAACGCATCACCGTCATAGAACGCGGCCTTCCAAGAACCCCCGCCTC
CAACTTCCGGGTACAAGCCCCGAGAAACCTCTTCTCTGTGCTTTCAGACC
GTTCCGTCGCCGAACTCATTCCCTCTCTTCCCGACGTTGGCATCAACTCA
CGTGGCGTGGATGCTGTGACCGGCTCTACGTTGGGAGGCTCTACTGCTAT
CAATGGCATGCAATGGACTGTTCCCTTTCCTGGTACAGTTGAGCAATGGG
GTGTCCATAACCTCACCACTACTCTCGCAGACACATACTTTCGTTCGATC
TACGACAAGGTGGGGTTTGGTCCGCCTCAGAATCCTCTTCAATACGCAGA
TGAGTATGTGCAAGCAGGAATCGACTCTGGCTTTGAATTGAGTCAGGATC
CGTTTGAGCAACCATTTCGCTCAATCTGGCAGACACGCCTTTCCATTACT
AGCTCCTTTCGACGTAATGACGCTTGCTCTGCCTATCTCACCCCTGTTCT
TCAGACAAGCTGCTCTCGAAACATCAACTTAATGCAAGGCCTCACCGTGT
CGAAAATCGTTTTTCAACGCACTACGAACTCTACCGTTCCGACAGAACCT
CCCTCTCTAAAAGCTGTGGCCGTGGACACGGTCCCCTCCCCAAACAGTTT
CCAACAGGCACAGCGCATTAACGTATCAAAGGAAATCCTTGTCACAGCTG
GTCCGTACAATTCTCCAAAATTGTTGCAACTCTCCGGCATTGGACTAAAG
TCTGTGCTTGAAGCAGCTAGTGTTCCCCAAATTCTCAATCTGCCTGTAGG
GGAGGCAACAATCTGCAGAGCCTCCGGCACCATACCTTCCACGTATACAG
GTGTTCCGGATGAACCAGCAAACAACCAGACTCTAATTAACTCTCCTGAA
GCTCGTCAGCAATGGGAAGCGGGCTCCGGGGGTATCCTTGGAACGCCAGT
TTCGGCGGCGAATGGTCGTGCCGGTACAGATGCATATTTTGGCTCCACTC
TGGTTCCCTTCGTTCCAGGTCCTCCTGAAGTTCGTTCCGCCTGCTACCAC
AACACCGAAACGACTGGTTATCTACGCATTCGTGACTCGAATCCATTCAG
TCCTCCGCTAGTCAAGTACAATCTACTTTCTTCGCAGCAAGATGTGCAAC
GACTGACAAACTGCTTGAAAGACATGGCTGATCTACATCGCAAGTTTCCG
CCGCAGTTTCAAATGTCTTTTATGTACCCGCCCAACGGGGAGATTACAGA
GGGATATGTAAGAAGTGTAGCGCAGTGGGGGGCACATTTTGTGGGTGGAT
GTCCGATTGGGGACGTTTTGGAAGGCGACTTTAAAGTAAAGGGTGTGCAT
AATTTGAGGGTGATAGATGCATCTGCTATTCGCTCGATGCCAGTCTCTGC
AGGACCTATGGCTTCTGTATACATGTTGGCTGAGTTAATGGGGGACAGAC
TCGTTGATCAATATAAGCTAGCTCTATGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:270365..271993-

>Gvermi12670.t1 ID=Gvermi12670.t1|Name=Gvermi12670.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1629bp|location=Sequence derived from alignment at ScGOVlb_425:270365..271993- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCTCTATTTTTCCCCTATTCCTATTATTAACAGTCTTCACTGTGAT
CCTCGCTTTAGTGAAAGCCCAGCAAACAACGGACTTCCTCATAGTTGGTG
GCGGTACAGCTGGCTGTGTTCTTGCTTCGAAGCTGTGCACAGCGTTTCCA
AATCAACGCATCACCGTCATAGAACGCGGCCTTCCAAGAACCCCCGCCTC
CAACTTCCGGGTACAAGCCCCGAGAAACCTCTTCTCTGTGCTTTCAGACC
GTTCCGTCGCCGAACTCATTCCCTCTCTTCCCGACGTTGGCATCAACTCA
CGTGGCGTGGATGCTGTGACCGGCTCTACGTTGGGAGGCTCTACTGCTAT
CAATGGCATGCAATGGACTGTTCCCTTTCCTGGTACAGTTGAGCAATGGG
GTGTCCATAACCTCACCACTACTCTCGCAGACACATACTTTCGTTCGATC
TACGACAAGGTGGGGTTTGGTCCGCCTCAGAATCCTCTTCAATACGCAGA
TGAGTATGTGCAAGCAGGAATCGACTCTGGCTTTGAATTGAGTCAGGATC
CGTTTGAGCAACCATTTCGCTCAATCTGGCAGACACGCCTTTCCATTACT
AGCTCCTTTCGACGTAATGACGCTTGCTCTGCCTATCTCACCCCTGTTCT
TCAGACAAGCTGCTCTCGAAACATCAACTTAATGCAAGGCCTCACCGTGT
CGAAAATCGTTTTTCAACGCACTACGAACTCTACCGTTCCGACAGAACCT
CCCTCTCTAAAAGCTGTGGCCGTGGACACGGTCCCCTCCCCAAACAGTTT
CCAACAGGCACAGCGCATTAACGTATCAAAGGAAATCCTTGTCACAGCTG
GTCCGTACAATTCTCCAAAATTGTTGCAACTCTCCGGCATTGGACTAAAG
TCTGTGCTTGAAGCAGCTAGTGTTCCCCAAATTCTCAATCTGCCTGTAGG
GGAGGCAACAATCTGCAGAGCCTCCGGCACCATACCTTCCACGTATACAG
GTGTTCCGGATGAACCAGCAAACAACCAGACTCTAATTAACTCTCCTGAA
GCTCGTCAGCAATGGGAAGCGGGCTCCGGGGGTATCCTTGGAACGCCAGT
TTCGGCGGCGAATGGTCGTGCCGGTACAGATGCATATTTTGGCTCCACTC
TGGTTCCCTTCGTTCCAGGTCCTCCTGAAGTTCGTTCCGCCTGCTACCAC
AACACCGAAACGACTGGTTATCTACGCATTCGTGACTCGAATCCATTCAG
TCCTCCGCTAGTCAAGTACAATCTACTTTCTTCGCAGCAAGATGTGCAAC
GACTGACAAACTGCTTGAAAGACATGGCTGATCTACATCGCAAGTTTCCG
CCGCAGTTTCAAATGTCTTTTATGTACCCGCCCAACGGGGAGATTACAGA
GGGATATGTAAGAAGTGTAGCGCAGTGGGGGGCACATTTTGTGGGTGGAT
GTCCGATTGGGGACGTTTTGGAAGGCGACTTTAAAGTAAAGGGTGTGCAT
AATTTGAGGGTGATAGATGCATCTGCTATTCGCTCGATGCCAGTCTCTGC
AGGACCTATGGCTTCTGTATACATGTTGGCTGAGTTAATGGGGGACAGAC
TCGTTGATCAATATAAGCTAGCTCTATGA
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