Gvermi12665.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12665.t1
Unique NameGvermi12665.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length455
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:217859..219319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12665Gvermi12665Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 217859..219319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12665.t1Gvermi12665.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 217859..219319 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12665.t1.start1Gvermi12665.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 217859..217861 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12665.t1.CDS1Gvermi12665.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 217859..218372 +
Gvermi12665.t1.CDS2Gvermi12665.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 218469..219319 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12665.t1.exon1Gvermi12665.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 217859..218372 +
Gvermi12665.t1.exon2Gvermi12665.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 218469..219319 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12665.t1.intron1Gvermi12665.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 218373..218468 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12665.t1.stop1Gvermi12665.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 219317..219319 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12665.t1 ID=Gvermi12665.t1|Name=Gvermi12665.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=455bp
MAASFGDTTRLMDGLNFTPQSSVTTTQFKSEAANTVVTSLLITLIIANLV
SIIDRLVFRTHSNIFSYRSFARSYFFLNSDDPLRIWFWMRGQYGFWNAAH
DFAPSQYGMWKRFLVVPICTRIGVLVITFGSNALSIPSEKRLNACCLGDY
TAVQGDIAQSPDVQGQKWDDVSNMTTNLESSSTPGMVAALYVKSKGMVFA
VIASGPTVQTIASYVGWRTEKGNIYHSLMRRWNGQQYCKAIIAGLNFSLN
ETCNISKVFDMDTGEAGVYMGTLECSFIANNILNGVSGFIRESLRFQRQK
ETALRTLVRREGVLDTQQVCAVDVTVSRPLINIILLLIALVTAFFLNILV
ERIISKSANAMDAAFHLVRKVLGHDTGANPLQISTRRGNVRTVALNKFVC
ADGVSAHFGFLQGQGEDVVQEFDTGKTVGRCIQVTRRGPRFVTEIPPKWK
EMKM*
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spliced messenger RNA

>Gvermi12665.t1 ID=Gvermi12665.t1|Name=Gvermi12665.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1365bp|location=Sequence derived from alignment at ScGOVlb_425:217859..219319+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCGTCCTTCGGCGATACAACAAGACTGATGGATGGCCTCAATTT
CACTCCGCAATCTTCCGTCACAACCACCCAGTTCAAGAGTGAGGCAGCCA
ACACTGTTGTCACTTCTCTACTCATCACGTTGATAATAGCCAACCTTGTA
AGCATCATCGACCGATTGGTATTCCGAACCCACAGTAATATATTCAGTTA
TCGTTCTTTCGCTCGCTCATATTTTTTTCTCAATTCGGACGACCCGTTGC
GGATCTGGTTCTGGATGCGGGGCCAGTATGGATTTTGGAACGCAGCACAT
GATTTTGCTCCGTCTCAGTACGGAATGTGGAAAAGATTTCTCGTTGTCCC
TATCTGTACTCGTATAGGTGTACTTGTTATCACTTTTGGTTCCAATGCAT
TGTCAATACCTTCAGAAAAGCGTCTTAATGCATGCTGTCTTGGAGACTAC
ACTGCTGTTCAGGGAGATATTGCCCAAAGTCCTGATGTACAGGGGCAGAA
ATGGGACGATGTATCGAATATGACGACTAATCTAGAAAGCTCTTCAACAC
CCGGGATGGTAGCGGCATTATATGTTAAAAGCAAGGGCATGGTATTTGCA
GTGATTGCCTCTGGCCCGACGGTTCAGACAATTGCTTCATATGTAGGATG
GAGAACAGAGAAAGGCAATATCTACCACTCTTTGATGCGGAGATGGAATG
GTCAGCAATACTGCAAAGCAATCATCGCTGGTTTGAACTTTTCGTTGAAC
GAAACATGTAATATCTCAAAGGTTTTTGACATGGACACTGGAGAAGCAGG
AGTGTACATGGGCACTTTGGAATGCTCTTTTATCGCAAACAATATTTTGA
ATGGTGTTTCTGGATTCATTAGAGAAAGTCTGCGGTTCCAGAGACAAAAA
GAGACTGCTCTTCGTACACTTGTGCGACGTGAAGGGGTATTAGACACACA
GCAAGTGTGCGCAGTTGATGTTACCGTCTCTCGTCCGTTGATTAACATCA
TACTGCTGCTCATTGCTTTAGTGACCGCGTTTTTCTTGAATATCTTGGTA
GAAAGAATTATATCAAAGAGTGCAAACGCGATGGATGCCGCTTTTCATCT
AGTACGAAAAGTGCTAGGACATGATACTGGCGCCAACCCGTTGCAAATAT
CGACAAGGCGGGGCAACGTACGAACAGTTGCGTTGAACAAGTTCGTATGC
GCTGATGGGGTTTCTGCACACTTCGGATTCTTACAGGGGCAGGGCGAAGA
TGTGGTGCAAGAGTTCGACACCGGAAAAACGGTGGGAAGGTGTATTCAAG
TGACTCGTCGAGGCCCTCGCTTTGTGACTGAAATACCGCCAAAGTGGAAA
GAAATGAAAATGTGA
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protein sequence of Gvermi12665.t1

>Gvermi12665.t1 ID=Gvermi12665.t1|Name=Gvermi12665.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=455bp
MAASFGDTTRLMDGLNFTPQSSVTTTQFKSEAANTVVTSLLITLIIANLV
SIIDRLVFRTHSNIFSYRSFARSYFFLNSDDPLRIWFWMRGQYGFWNAAH
DFAPSQYGMWKRFLVVPICTRIGVLVITFGSNALSIPSEKRLNACCLGDY
TAVQGDIAQSPDVQGQKWDDVSNMTTNLESSSTPGMVAALYVKSKGMVFA
VIASGPTVQTIASYVGWRTEKGNIYHSLMRRWNGQQYCKAIIAGLNFSLN
ETCNISKVFDMDTGEAGVYMGTLECSFIANNILNGVSGFIRESLRFQRQK
ETALRTLVRREGVLDTQQVCAVDVTVSRPLINIILLLIALVTAFFLNILV
ERIISKSANAMDAAFHLVRKVLGHDTGANPLQISTRRGNVRTVALNKFVC
ADGVSAHFGFLQGQGEDVVQEFDTGKTVGRCIQVTRRGPRFVTEIPPKWK
EMKM*
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mRNA from alignment at ScGOVlb_425:217859..219319+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12665.t1 ID=Gvermi12665.t1|Name=Gvermi12665.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1461bp|location=Sequence derived from alignment at ScGOVlb_425:217859..219319+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGCGTCCTTCGGCGATACAACAAGACTGATGGATGGCCTCAATTT
CACTCCGCAATCTTCCGTCACAACCACCCAGTTCAAGAGTGAGGCAGCCA
ACACTGTTGTCACTTCTCTACTCATCACGTTGATAATAGCCAACCTTGTA
AGCATCATCGACCGATTGGTATTCCGAACCCACAGTAATATATTCAGTTA
TCGTTCTTTCGCTCGCTCATATTTTTTTCTCAATTCGGACGACCCGTTGC
GGATCTGGTTCTGGATGCGGGGCCAGTATGGATTTTGGAACGCAGCACAT
GATTTTGCTCCGTCTCAGTACGGAATGTGGAAAAGATTTCTCGTTGTCCC
TATCTGTACTCGTATAGGTGTACTTGTTATCACTTTTGGTTCCAATGCAT
TGTCAATACCTTCAGAAAAGCGTCTTAATGCATGCTGTCTTGGAGACTAC
ACTGCTGTTCAGGGAGATATTGCCCAAAGTCCTGATGTACAGGGGCAGAA
ATGGGACGATGTATGTTCTCATATACCTTTAAAAACAGAGCTTGGCACGT
TTAGATCGTCAGCATCTTACTGTTCGTAAAATTTATTCTTGGGCGACATT
CCTGTATTAGCGAATATGACGACTAATCTAGAAAGCTCTTCAACACCCGG
GATGGTAGCGGCATTATATGTTAAAAGCAAGGGCATGGTATTTGCAGTGA
TTGCCTCTGGCCCGACGGTTCAGACAATTGCTTCATATGTAGGATGGAGA
ACAGAGAAAGGCAATATCTACCACTCTTTGATGCGGAGATGGAATGGTCA
GCAATACTGCAAAGCAATCATCGCTGGTTTGAACTTTTCGTTGAACGAAA
CATGTAATATCTCAAAGGTTTTTGACATGGACACTGGAGAAGCAGGAGTG
TACATGGGCACTTTGGAATGCTCTTTTATCGCAAACAATATTTTGAATGG
TGTTTCTGGATTCATTAGAGAAAGTCTGCGGTTCCAGAGACAAAAAGAGA
CTGCTCTTCGTACACTTGTGCGACGTGAAGGGGTATTAGACACACAGCAA
GTGTGCGCAGTTGATGTTACCGTCTCTCGTCCGTTGATTAACATCATACT
GCTGCTCATTGCTTTAGTGACCGCGTTTTTCTTGAATATCTTGGTAGAAA
GAATTATATCAAAGAGTGCAAACGCGATGGATGCCGCTTTTCATCTAGTA
CGAAAAGTGCTAGGACATGATACTGGCGCCAACCCGTTGCAAATATCGAC
AAGGCGGGGCAACGTACGAACAGTTGCGTTGAACAAGTTCGTATGCGCTG
ATGGGGTTTCTGCACACTTCGGATTCTTACAGGGGCAGGGCGAAGATGTG
GTGCAAGAGTTCGACACCGGAAAAACGGTGGGAAGGTGTATTCAAGTGAC
TCGTCGAGGCCCTCGCTTTGTGACTGAAATACCGCCAAAGTGGAAAGAAA
TGAAAATGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:217859..219319+

>Gvermi12665.t1 ID=Gvermi12665.t1|Name=Gvermi12665.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1365bp|location=Sequence derived from alignment at ScGOVlb_425:217859..219319+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGCGTCCTTCGGCGATACAACAAGACTGATGGATGGCCTCAATTT
CACTCCGCAATCTTCCGTCACAACCACCCAGTTCAAGAGTGAGGCAGCCA
ACACTGTTGTCACTTCTCTACTCATCACGTTGATAATAGCCAACCTTGTA
AGCATCATCGACCGATTGGTATTCCGAACCCACAGTAATATATTCAGTTA
TCGTTCTTTCGCTCGCTCATATTTTTTTCTCAATTCGGACGACCCGTTGC
GGATCTGGTTCTGGATGCGGGGCCAGTATGGATTTTGGAACGCAGCACAT
GATTTTGCTCCGTCTCAGTACGGAATGTGGAAAAGATTTCTCGTTGTCCC
TATCTGTACTCGTATAGGTGTACTTGTTATCACTTTTGGTTCCAATGCAT
TGTCAATACCTTCAGAAAAGCGTCTTAATGCATGCTGTCTTGGAGACTAC
ACTGCTGTTCAGGGAGATATTGCCCAAAGTCCTGATGTACAGGGGCAGAA
ATGGGACGATGTATCGAATATGACGACTAATCTAGAAAGCTCTTCAACAC
CCGGGATGGTAGCGGCATTATATGTTAAAAGCAAGGGCATGGTATTTGCA
GTGATTGCCTCTGGCCCGACGGTTCAGACAATTGCTTCATATGTAGGATG
GAGAACAGAGAAAGGCAATATCTACCACTCTTTGATGCGGAGATGGAATG
GTCAGCAATACTGCAAAGCAATCATCGCTGGTTTGAACTTTTCGTTGAAC
GAAACATGTAATATCTCAAAGGTTTTTGACATGGACACTGGAGAAGCAGG
AGTGTACATGGGCACTTTGGAATGCTCTTTTATCGCAAACAATATTTTGA
ATGGTGTTTCTGGATTCATTAGAGAAAGTCTGCGGTTCCAGAGACAAAAA
GAGACTGCTCTTCGTACACTTGTGCGACGTGAAGGGGTATTAGACACACA
GCAAGTGTGCGCAGTTGATGTTACCGTCTCTCGTCCGTTGATTAACATCA
TACTGCTGCTCATTGCTTTAGTGACCGCGTTTTTCTTGAATATCTTGGTA
GAAAGAATTATATCAAAGAGTGCAAACGCGATGGATGCCGCTTTTCATCT
AGTACGAAAAGTGCTAGGACATGATACTGGCGCCAACCCGTTGCAAATAT
CGACAAGGCGGGGCAACGTACGAACAGTTGCGTTGAACAAGTTCGTATGC
GCTGATGGGGTTTCTGCACACTTCGGATTCTTACAGGGGCAGGGCGAAGA
TGTGGTGCAAGAGTTCGACACCGGAAAAACGGTGGGAAGGTGTATTCAAG
TGACTCGTCGAGGCCCTCGCTTTGTGACTGAAATACCGCCAAAGTGGAAA
GAAATGAAAATGTGA
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