Gvermi12656.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12656.t1
Unique NameGvermi12656.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length330
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:120259..121248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78898.MVEG_04553T0
Max annot lvl4751|Fungi
Evalue2.94e-12
EggNOG OGs2E3H1@1|root,2SAJC@2759|Eukaryota,3ARBF@33154|Opisthokonta,3PFVF@4751|Fungi
DescriptionAllomyces macrogynus ATCC 38327
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12656Gvermi12656Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 120259..121248 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12656.t1.stop1Gvermi12656.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 120259..120261 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12656.t1.CDS1Gvermi12656.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 120259..121248 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12656.t1.exon1Gvermi12656.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 120259..121248 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12656.t1.start1Gvermi12656.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 121246..121248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12656.t1Gvermi12656.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 120259..121248 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12656.t1 ID=Gvermi12656.t1|Name=Gvermi12656.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=330bp
MHLLTQTCRLGGEPQFGVLDCAGPCDLSAIEGEYPYSNHGSSQNPARVYR
RGEQTRIKYQRNNHAPGGFIRLTLVTPDQMMNKEVHKRNAFHYSCWGAKP
VIAAEDELNKDRFGFTMIGSDGEQHSVDKGYYVMDVTIPECVPDGDYVMG
WVWYGGTGGNVETNEPQEPVPWGYFGDYWSCSFVRIEGGAPLAPSCGPVF
VNDMSQFSQDGCMSANDEPGICTYEPCKVDGYYQKPKSFKNAGQPPPITP
ENFGVSYDKSVESNAPKETPDDIDLTEAGNSSANMSYITPSPVSAEYDTL
PSPSLEIIETEPGDGYPEHSMEQDYTSFD*
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spliced messenger RNA

>Gvermi12656.t1 ID=Gvermi12656.t1|Name=Gvermi12656.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=990bp|location=Sequence derived from alignment at ScGOVlb_425:120259..121248- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCTACTTACACAGACGTGTCGCCTTGGAGGAGAACCCCAGTTTGG
AGTGCTTGATTGTGCAGGACCGTGTGATCTTAGCGCGATTGAAGGTGAAT
ACCCGTATTCAAACCACGGATCTTCACAGAACCCTGCTCGAGTGTACAGA
CGGGGTGAACAAACCCGCATCAAATATCAGCGTAACAATCATGCACCGGG
TGGTTTCATTCGACTCACTCTCGTAACACCCGACCAAATGATGAACAAGG
AAGTCCACAAGCGCAATGCCTTTCACTATAGTTGTTGGGGTGCCAAGCCT
GTTATAGCAGCTGAAGACGAGCTCAATAAAGACCGCTTTGGCTTCACCAT
GATCGGAAGCGATGGGGAACAGCACAGTGTTGATAAAGGATACTACGTAA
TGGATGTTACTATCCCAGAATGTGTTCCAGATGGTGATTACGTCATGGGT
TGGGTTTGGTATGGGGGAACGGGTGGAAATGTGGAGACTAATGAACCGCA
AGAACCTGTTCCGTGGGGATATTTCGGAGACTATTGGTCATGTTCGTTTG
TTCGTATCGAAGGGGGAGCTCCACTGGCACCTTCTTGCGGCCCAGTTTTT
GTGAATGATATGTCGCAGTTTTCTCAAGATGGTTGTATGTCTGCCAACGA
TGAGCCGGGTATTTGCACATACGAGCCGTGCAAGGTGGATGGATATTATC
AGAAGCCAAAATCGTTTAAAAACGCAGGCCAACCGCCGCCGATTACACCA
GAAAACTTTGGGGTGTCCTATGATAAAAGCGTTGAATCGAACGCTCCGAA
AGAAACTCCAGACGATATCGATTTAACTGAAGCTGGAAATTCTAGTGCAA
ACATGTCTTACATAACGCCATCTCCGGTGTCTGCTGAGTACGACACATTA
CCATCTCCATCTTTAGAGATAATCGAGACTGAGCCAGGTGACGGTTACCC
TGAGCATAGTATGGAACAAGATTATACAAGCTTCGACTAA
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protein sequence of Gvermi12656.t1

>Gvermi12656.t1 ID=Gvermi12656.t1|Name=Gvermi12656.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=330bp
MHLLTQTCRLGGEPQFGVLDCAGPCDLSAIEGEYPYSNHGSSQNPARVYR
RGEQTRIKYQRNNHAPGGFIRLTLVTPDQMMNKEVHKRNAFHYSCWGAKP
VIAAEDELNKDRFGFTMIGSDGEQHSVDKGYYVMDVTIPECVPDGDYVMG
WVWYGGTGGNVETNEPQEPVPWGYFGDYWSCSFVRIEGGAPLAPSCGPVF
VNDMSQFSQDGCMSANDEPGICTYEPCKVDGYYQKPKSFKNAGQPPPITP
ENFGVSYDKSVESNAPKETPDDIDLTEAGNSSANMSYITPSPVSAEYDTL
PSPSLEIIETEPGDGYPEHSMEQDYTSFD*
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mRNA from alignment at ScGOVlb_425:120259..121248-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12656.t1 ID=Gvermi12656.t1|Name=Gvermi12656.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=990bp|location=Sequence derived from alignment at ScGOVlb_425:120259..121248- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCACCTACTTACACAGACGTGTCGCCTTGGAGGAGAACCCCAGTTTGG
AGTGCTTGATTGTGCAGGACCGTGTGATCTTAGCGCGATTGAAGGTGAAT
ACCCGTATTCAAACCACGGATCTTCACAGAACCCTGCTCGAGTGTACAGA
CGGGGTGAACAAACCCGCATCAAATATCAGCGTAACAATCATGCACCGGG
TGGTTTCATTCGACTCACTCTCGTAACACCCGACCAAATGATGAACAAGG
AAGTCCACAAGCGCAATGCCTTTCACTATAGTTGTTGGGGTGCCAAGCCT
GTTATAGCAGCTGAAGACGAGCTCAATAAAGACCGCTTTGGCTTCACCAT
GATCGGAAGCGATGGGGAACAGCACAGTGTTGATAAAGGATACTACGTAA
TGGATGTTACTATCCCAGAATGTGTTCCAGATGGTGATTACGTCATGGGT
TGGGTTTGGTATGGGGGAACGGGTGGAAATGTGGAGACTAATGAACCGCA
AGAACCTGTTCCGTGGGGATATTTCGGAGACTATTGGTCATGTTCGTTTG
TTCGTATCGAAGGGGGAGCTCCACTGGCACCTTCTTGCGGCCCAGTTTTT
GTGAATGATATGTCGCAGTTTTCTCAAGATGGTTGTATGTCTGCCAACGA
TGAGCCGGGTATTTGCACATACGAGCCGTGCAAGGTGGATGGATATTATC
AGAAGCCAAAATCGTTTAAAAACGCAGGCCAACCGCCGCCGATTACACCA
GAAAACTTTGGGGTGTCCTATGATAAAAGCGTTGAATCGAACGCTCCGAA
AGAAACTCCAGACGATATCGATTTAACTGAAGCTGGAAATTCTAGTGCAA
ACATGTCTTACATAACGCCATCTCCGGTGTCTGCTGAGTACGACACATTA
CCATCTCCATCTTTAGAGATAATCGAGACTGAGCCAGGTGACGGTTACCC
TGAGCATAGTATGGAACAAGATTATACAAGCTTCGACTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:120259..121248-

>Gvermi12656.t1 ID=Gvermi12656.t1|Name=Gvermi12656.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=990bp|location=Sequence derived from alignment at ScGOVlb_425:120259..121248- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCACCTACTTACACAGACGTGTCGCCTTGGAGGAGAACCCCAGTTTGG
AGTGCTTGATTGTGCAGGACCGTGTGATCTTAGCGCGATTGAAGGTGAAT
ACCCGTATTCAAACCACGGATCTTCACAGAACCCTGCTCGAGTGTACAGA
CGGGGTGAACAAACCCGCATCAAATATCAGCGTAACAATCATGCACCGGG
TGGTTTCATTCGACTCACTCTCGTAACACCCGACCAAATGATGAACAAGG
AAGTCCACAAGCGCAATGCCTTTCACTATAGTTGTTGGGGTGCCAAGCCT
GTTATAGCAGCTGAAGACGAGCTCAATAAAGACCGCTTTGGCTTCACCAT
GATCGGAAGCGATGGGGAACAGCACAGTGTTGATAAAGGATACTACGTAA
TGGATGTTACTATCCCAGAATGTGTTCCAGATGGTGATTACGTCATGGGT
TGGGTTTGGTATGGGGGAACGGGTGGAAATGTGGAGACTAATGAACCGCA
AGAACCTGTTCCGTGGGGATATTTCGGAGACTATTGGTCATGTTCGTTTG
TTCGTATCGAAGGGGGAGCTCCACTGGCACCTTCTTGCGGCCCAGTTTTT
GTGAATGATATGTCGCAGTTTTCTCAAGATGGTTGTATGTCTGCCAACGA
TGAGCCGGGTATTTGCACATACGAGCCGTGCAAGGTGGATGGATATTATC
AGAAGCCAAAATCGTTTAAAAACGCAGGCCAACCGCCGCCGATTACACCA
GAAAACTTTGGGGTGTCCTATGATAAAAGCGTTGAATCGAACGCTCCGAA
AGAAACTCCAGACGATATCGATTTAACTGAAGCTGGAAATTCTAGTGCAA
ACATGTCTTACATAACGCCATCTCCGGTGTCTGCTGAGTACGACACATTA
CCATCTCCATCTTTAGAGATAATCGAGACTGAGCCAGGTGACGGTTACCC
TGAGCATAGTATGGAACAAGATTATACAAGCTTCGACTAA
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