Gvermi12655.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12655.t1
Unique Name	Gvermi12655.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	501

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:117551..119053 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	112098.XP_008606149.1
PFAMs	EamA,NTP_transf_3
Max annot lvl	2759\|Eukaryota
Evalue	2.58e-14
EggNOG OGs	29D5M@1\|root,2RK9E@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12655	Gvermi12655	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 117551..119053 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12655.t1.start1	Gvermi12655.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 117551..117553 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12655.t1.CDS1	Gvermi12655.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 117551..119053 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12655.t1.exon1	Gvermi12655.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 117551..119053 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12655.t1.stop1	Gvermi12655.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 119051..119053 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12655.t1	Gvermi12655.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 117551..119053 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:117551..119053+
coding sequence from alignment at ScGOVlb_425:117551..119053+

mRNA sequence

>Gvermi12655.t1 ID=Gvermi12655.t1|Name=Gvermi12655.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=501bp
MADGPNPGRSSSGQASQSLPVQQQAAEIHGSSTGSLSPLSAAVLPRTSVT
LPQHSVHPVSPTPTAMSDERPSLGPLAKIPLRPSMRPVLQLDLDAVAEQL
SIFQGAAVTQEDLRNSFPIAKKQPQSPLQPSSIPKSFASVYPSGTETPVI
PLSVEDDDFNDDREGQNLVLHFETVDEAHGLSDTRDSPNEMGDKVDASKG
WAVSVPVSEPYEPPLQTWPTEPAEIMDEETSLLEHEPQGVDLAKHGDMVF
QPDTTAVVQRQGNENDFEDQRVIVTVPETTSNGVNSGFIIPNYDSNENLX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRTFCGDFIAALSSLGA
IVYLDSCKELRGRVSFFPMMTFISALSSITFSISSMILSGTNLSVTDHGV
FGWLQTDRHILGLYLGGVVGFLGTVSCIASLKYLPSVVVSSVQTMIPVVG
TTLAVLMRIENLPDIWTTLGGAVLFYGVLLIADATKRSEVIVVLNEHLTS
*

spliced messenger RNA

>Gvermi12655.t1 ID=Gvermi12655.t1|Name=Gvermi12655.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at ScGOVlb_425:117551..119053+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGACGGGCCCAACCCCGGCAGATCGTCGTCAGGTCAAGCTTCACA
ATCTTTGCCGGTGCAGCAGCAAGCTGCAGAGATCCATGGATCTTCAACTG
GGTCGCTCTCACCTCTCTCTGCTGCCGTTTTGCCCCGTACAAGTGTCACT
CTGCCTCAACATTCCGTCCACCCCGTCTCCCCCACGCCCACTGCGATGTC
GGACGAAAGACCGAGCCTGGGCCCCCTCGCTAAAATTCCGTTGCGTCCTA
GTATGCGACCAGTTCTCCAACTTGACTTGGACGCCGTCGCAGAACAGCTC
AGCATCTTTCAAGGTGCTGCTGTCACTCAGGAAGACTTGAGAAACTCGTT
CCCTATCGCGAAAAAACAACCGCAATCCCCATTGCAACCATCGAGCATTC
CCAAATCCTTTGCCAGTGTGTACCCTTCCGGCACCGAAACGCCAGTAATT
CCCCTGTCCGTGGAAGACGATGATTTCAACGACGATCGCGAAGGCCAGAA
TCTCGTTCTCCACTTTGAAACAGTGGATGAGGCTCACGGCTTGTCTGACA
CCCGAGACTCGCCAAATGAGATGGGAGACAAAGTCGACGCGTCAAAAGGT
TGGGCTGTGTCCGTTCCGGTGAGTGAACCCTATGAACCACCGCTGCAAAC
ATGGCCAACTGAGCCCGCCGAAATCATGGATGAGGAAACGTCATTATTGG
AACATGAACCCCAGGGGGTCGACTTGGCAAAGCACGGCGACATGGTTTTC
CAACCAGATACAACTGCTGTTGTGCAACGGCAAGGAAATGAGAACGATTT
CGAGGATCAAAGGGTTATCGTAACTGTGCCTGAGACTACGAGCAACGGAG
TCAATTCTGGGTTTATCATTCCGAACTATGACTCCAATGAAAATCTGANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG
TTCGCACTTTCTGCGGAGATTTTATCGCGGCACTAAGTTCACTTGGAGCC
ATTGTATATCTTGACTCATGCAAAGAACTCCGGGGACGCGTCTCTTTCTT
TCCTATGATGACATTTATATCAGCCCTGAGCTCGATCACGTTCTCTATTT
CATCAATGATACTCTCTGGAACAAACTTGTCGGTAACGGATCATGGAGTC
TTTGGGTGGTTGCAGACGGATCGACATATTCTTGGTTTGTATCTCGGTGG
CGTGGTTGGCTTTTTAGGTACTGTGAGCTGCATTGCCTCTTTGAAGTACT
TACCAAGTGTGGTGGTAAGCAGCGTGCAGACAATGATTCCTGTGGTGGGT
ACCACTCTGGCCGTTCTGATGAGAATCGAAAACCTCCCGGATATATGGAC
CACGCTGGGTGGTGCAGTGCTTTTTTACGGTGTGCTGTTGATTGCAGACG
CAACCAAGCGAAGTGAGGTGATTGTTGTCCTCAACGAACATCTGACATCA
TGA

protein sequence of Gvermi12655.t1

>Gvermi12655.t1 ID=Gvermi12655.t1|Name=Gvermi12655.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=501bp
MADGPNPGRSSSGQASQSLPVQQQAAEIHGSSTGSLSPLSAAVLPRTSVT
LPQHSVHPVSPTPTAMSDERPSLGPLAKIPLRPSMRPVLQLDLDAVAEQL
SIFQGAAVTQEDLRNSFPIAKKQPQSPLQPSSIPKSFASVYPSGTETPVI
PLSVEDDDFNDDREGQNLVLHFETVDEAHGLSDTRDSPNEMGDKVDASKG
WAVSVPVSEPYEPPLQTWPTEPAEIMDEETSLLEHEPQGVDLAKHGDMVF
QPDTTAVVQRQGNENDFEDQRVIVTVPETTSNGVNSGFIIPNYDSNENLX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRTFCGDFIAALSSLGA
IVYLDSCKELRGRVSFFPMMTFISALSSITFSISSMILSGTNLSVTDHGV
FGWLQTDRHILGLYLGGVVGFLGTVSCIASLKYLPSVVVSSVQTMIPVVG
TTLAVLMRIENLPDIWTTLGGAVLFYGVLLIADATKRSEVIVVLNEHLTS
*

mRNA from alignment at ScGOVlb_425:117551..119053+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12655.t1 ID=Gvermi12655.t1|Name=Gvermi12655.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at ScGOVlb_425:117551..119053+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGACGGGCCCAACCCCGGCAGATCGTCGTCAGGTCAAGCTTCACA
ATCTTTGCCGGTGCAGCAGCAAGCTGCAGAGATCCATGGATCTTCAACTG
GGTCGCTCTCACCTCTCTCTGCTGCCGTTTTGCCCCGTACAAGTGTCACT
CTGCCTCAACATTCCGTCCACCCCGTCTCCCCCACGCCCACTGCGATGTC
GGACGAAAGACCGAGCCTGGGCCCCCTCGCTAAAATTCCGTTGCGTCCTA
GTATGCGACCAGTTCTCCAACTTGACTTGGACGCCGTCGCAGAACAGCTC
AGCATCTTTCAAGGTGCTGCTGTCACTCAGGAAGACTTGAGAAACTCGTT
CCCTATCGCGAAAAAACAACCGCAATCCCCATTGCAACCATCGAGCATTC
CCAAATCCTTTGCCAGTGTGTACCCTTCCGGCACCGAAACGCCAGTAATT
CCCCTGTCCGTGGAAGACGATGATTTCAACGACGATCGCGAAGGCCAGAA
TCTCGTTCTCCACTTTGAAACAGTGGATGAGGCTCACGGCTTGTCTGACA
CCCGAGACTCGCCAAATGAGATGGGAGACAAAGTCGACGCGTCAAAAGGT
TGGGCTGTGTCCGTTCCGGTGAGTGAACCCTATGAACCACCGCTGCAAAC
ATGGCCAACTGAGCCCGCCGAAATCATGGATGAGGAAACGTCATTATTGG
AACATGAACCCCAGGGGGTCGACTTGGCAAAGCACGGCGACATGGTTTTC
CAACCAGATACAACTGCTGTTGTGCAACGGCAAGGAAATGAGAACGATTT
CGAGGATCAAAGGGTTATCGTAACTGTGCCTGAGACTACGAGCAACGGAG
TCAATTCTGGGTTTATCATTCCGAACTATGACTCCAATGAAAATCTGANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG
TTCGCACTTTCTGCGGAGATTTTATCGCGGCACTAAGTTCACTTGGAGCC
ATTGTATATCTTGACTCATGCAAAGAACTCCGGGGACGCGTCTCTTTCTT
TCCTATGATGACATTTATATCAGCCCTGAGCTCGATCACGTTCTCTATTT
CATCAATGATACTCTCTGGAACAAACTTGTCGGTAACGGATCATGGAGTC
TTTGGGTGGTTGCAGACGGATCGACATATTCTTGGTTTGTATCTCGGTGG
CGTGGTTGGCTTTTTAGGTACTGTGAGCTGCATTGCCTCTTTGAAGTACT
TACCAAGTGTGGTGGTAAGCAGCGTGCAGACAATGATTCCTGTGGTGGGT
ACCACTCTGGCCGTTCTGATGAGAATCGAAAACCTCCCGGATATATGGAC
CACGCTGGGTGGTGCAGTGCTTTTTTACGGTGTGCTGTTGATTGCAGACG
CAACCAAGCGAAGTGAGGTGATTGTTGTCCTCAACGAACATCTGACATCA
TGA

Coding sequence (CDS) from alignment at ScGOVlb_425:117551..119053+

>Gvermi12655.t1 ID=Gvermi12655.t1|Name=Gvermi12655.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1503bp|location=Sequence derived from alignment at ScGOVlb_425:117551..119053+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGACGGGCCCAACCCCGGCAGATCGTCGTCAGGTCAAGCTTCACA
ATCTTTGCCGGTGCAGCAGCAAGCTGCAGAGATCCATGGATCTTCAACTG
GGTCGCTCTCACCTCTCTCTGCTGCCGTTTTGCCCCGTACAAGTGTCACT
CTGCCTCAACATTCCGTCCACCCCGTCTCCCCCACGCCCACTGCGATGTC
GGACGAAAGACCGAGCCTGGGCCCCCTCGCTAAAATTCCGTTGCGTCCTA
GTATGCGACCAGTTCTCCAACTTGACTTGGACGCCGTCGCAGAACAGCTC
AGCATCTTTCAAGGTGCTGCTGTCACTCAGGAAGACTTGAGAAACTCGTT
CCCTATCGCGAAAAAACAACCGCAATCCCCATTGCAACCATCGAGCATTC
CCAAATCCTTTGCCAGTGTGTACCCTTCCGGCACCGAAACGCCAGTAATT
CCCCTGTCCGTGGAAGACGATGATTTCAACGACGATCGCGAAGGCCAGAA
TCTCGTTCTCCACTTTGAAACAGTGGATGAGGCTCACGGCTTGTCTGACA
CCCGAGACTCGCCAAATGAGATGGGAGACAAAGTCGACGCGTCAAAAGGT
TGGGCTGTGTCCGTTCCGGTGAGTGAACCCTATGAACCACCGCTGCAAAC
ATGGCCAACTGAGCCCGCCGAAATCATGGATGAGGAAACGTCATTATTGG
AACATGAACCCCAGGGGGTCGACTTGGCAAAGCACGGCGACATGGTTTTC
CAACCAGATACAACTGCTGTTGTGCAACGGCAAGGAAATGAGAACGATTT
CGAGGATCAAAGGGTTATCGTAACTGTGCCTGAGACTACGAGCAACGGAG
TCAATTCTGGGTTTATCATTCCGAACTATGACTCCAATGAAAATCTGANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG
TTCGCACTTTCTGCGGAGATTTTATCGCGGCACTAAGTTCACTTGGAGCC
ATTGTATATCTTGACTCATGCAAAGAACTCCGGGGACGCGTCTCTTTCTT
TCCTATGATGACATTTATATCAGCCCTGAGCTCGATCACGTTCTCTATTT
CATCAATGATACTCTCTGGAACAAACTTGTCGGTAACGGATCATGGAGTC
TTTGGGTGGTTGCAGACGGATCGACATATTCTTGGTTTGTATCTCGGTGG
CGTGGTTGGCTTTTTAGGTACTGTGAGCTGCATTGCCTCTTTGAAGTACT
TACCAAGTGTGGTGGTAAGCAGCGTGCAGACAATGATTCCTGTGGTGGGT
ACCACTCTGGCCGTTCTGATGAGAATCGAAAACCTCCCGGATATATGGAC
CACGCTGGGTGGTGCAGTGCTTTTTTACGGTGTGCTGTTGATTGCAGACG
CAACCAAGCGAAGTGAGGTGATTGTTGTCCTCAACGAACATCTGACATCA
TGA