Gvermi12652.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12652.t1
Unique NameGvermi12652.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length118
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:79707..80138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12652Gvermi12652Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 79707..80138 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12652.t1Gvermi12652.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 79707..80138 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12652.t1.stop1Gvermi12652.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 79707..79709 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12652.t1.CDS1Gvermi12652.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 79707..79973 -
Gvermi12652.t1.CDS2Gvermi12652.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 80052..80138 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12652.t1.exon1Gvermi12652.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 79707..79973 -
Gvermi12652.t1.exon2Gvermi12652.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 80052..80138 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12652.t1.intron1Gvermi12652.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 79974..80051 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12652.t1.start1Gvermi12652.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 80136..80138 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12652.t1 ID=Gvermi12652.t1|Name=Gvermi12652.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=118bp
MVNPAFVPVGSYQTVLALPCDMNTPEIHQGSVNKKSPLWVLSITPQCGFC
MFQCVIATTRNLPADSRSNPEQNDSDIDGNQDGAIYDRIQQPQTAIASDT
ERLTDLHTVFCDSKAPR*
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spliced messenger RNA

>Gvermi12652.t1 ID=Gvermi12652.t1|Name=Gvermi12652.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=354bp|location=Sequence derived from alignment at ScGOVlb_425:79707..80138- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAAACCCAGCTTTTGTTCCAGTTGGCTCTTACCAGACAGTTCTTGC
CCTGCCCTGTGACATGAACACGCCAGAAATCCATCAGGGATCTGTCAACA
AGAAATCTCCTTTGTGGGTTCTGTCCATCACACCACAATGTGGCTTCTGC
ATGTTCCAGTGCGTTATTGCAACAACGCGAAACCTTCCTGCAGATTCCAG
ATCAAACCCGGAACAAAATGATTCGGACATCGACGGTAACCAGGACGGAG
CTATCTACGATAGAATCCAACAACCACAGACTGCCATAGCATCAGATACG
GAACGTTTAACAGATCTTCACACCGTATTTTGTGACTCTAAAGCCCCTAG
ATGA
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protein sequence of Gvermi12652.t1

>Gvermi12652.t1 ID=Gvermi12652.t1|Name=Gvermi12652.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=118bp
MVNPAFVPVGSYQTVLALPCDMNTPEIHQGSVNKKSPLWVLSITPQCGFC
MFQCVIATTRNLPADSRSNPEQNDSDIDGNQDGAIYDRIQQPQTAIASDT
ERLTDLHTVFCDSKAPR*
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mRNA from alignment at ScGOVlb_425:79707..80138-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12652.t1 ID=Gvermi12652.t1|Name=Gvermi12652.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=432bp|location=Sequence derived from alignment at ScGOVlb_425:79707..80138- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTAAACCCAGCTTTTGTTCCAGTTGGCTCTTACCAGACAGTTCTTGC
CCTGCCCTGTGACATGAACACGCCAGAAATCCATCAGGTTCGTACCAAAC
CGCAATGTCGCAGACCATACTTGAGTCGGTAGCCAACGGAATACCTTTGG
GTCATTCGCTTTCAGGGATCTGTCAACAAGAAATCTCCTTTGTGGGTTCT
GTCCATCACACCACAATGTGGCTTCTGCATGTTCCAGTGCGTTATTGCAA
CAACGCGAAACCTTCCTGCAGATTCCAGATCAAACCCGGAACAAAATGAT
TCGGACATCGACGGTAACCAGGACGGAGCTATCTACGATAGAATCCAACA
ACCACAGACTGCCATAGCATCAGATACGGAACGTTTAACAGATCTTCACA
CCGTATTTTGTGACTCTAAAGCCCCTAGATGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:79707..80138-

>Gvermi12652.t1 ID=Gvermi12652.t1|Name=Gvermi12652.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=354bp|location=Sequence derived from alignment at ScGOVlb_425:79707..80138- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTAAACCCAGCTTTTGTTCCAGTTGGCTCTTACCAGACAGTTCTTGC
CCTGCCCTGTGACATGAACACGCCAGAAATCCATCAGGGATCTGTCAACA
AGAAATCTCCTTTGTGGGTTCTGTCCATCACACCACAATGTGGCTTCTGC
ATGTTCCAGTGCGTTATTGCAACAACGCGAAACCTTCCTGCAGATTCCAG
ATCAAACCCGGAACAAAATGATTCGGACATCGACGGTAACCAGGACGGAG
CTATCTACGATAGAATCCAACAACCACAGACTGCCATAGCATCAGATACG
GAACGTTTAACAGATCTTCACACCGTATTTTGTGACTCTAAAGCCCCTAG
ATGA
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