Gvermi1265.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1265.t1
Unique NameGvermi1265.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length256
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1984contigScGOVlb_1984:86..851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1265Gvermi1265Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1984 86..851 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1265.t1.start1Gvermi1265.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1984 86..88 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1265.t1.CDS1Gvermi1265.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1984 86..851 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1265.t1.exon1Gvermi1265.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1984 86..851 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1265.t1Gvermi1265.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1984 86..851 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1265.t1 ID=Gvermi1265.t1|Name=Gvermi1265.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=256bp
MPPRTRSSSMEREESAPIEPSAPPMVNPVSEGLGDPMVFEAVKPRLDKFF
APSRKRIQKLDEKIARKNLLLKNLGKHKEDGTLPKTVLVPRMPLIPESLK
DKFTDEYKSMSEKFAKDTLEFLFKVRTEEIDVLRNEREQLLKDAMEKVKV
VCGGTLTQNGNISEDQMISVFADYETKIREEMTITRLETELDVRVGQAIE
EEKKHASLLKKTAAEADEAEPSTEVDRLRKEVQALRKDMIKFKKTQPQPK
NNTKSX
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spliced messenger RNA

>Gvermi1265.t1 ID=Gvermi1265.t1|Name=Gvermi1265.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=766bp|location=Sequence derived from alignment at ScGOVlb_1984:86..851+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCCTCGCACTAGGAGTTCAAGTATGGAGCGGGAAGAATCAGCTCC
AATTGAGCCCAGTGCTCCGCCTATGGTGAACCCAGTCTCCGAAGGACTTG
GGGATCCGATGGTCTTTGAGGCCGTGAAGCCACGCTTGGATAAGTTTTTC
GCTCCATCTCGCAAGCGAATCCAAAAACTGGACGAAAAGATCGCTCGTAA
AAATCTTCTTTTGAAGAACTTGGGTAAGCATAAAGAGGATGGGACTCTCC
CGAAAACCGTACTGGTTCCTCGAATGCCACTGATACCCGAGAGTCTAAAA
GACAAATTCACTGATGAGTACAAGTCCATGTCAGAGAAGTTTGCAAAAGA
CACTCTGGAGTTCCTCTTCAAAGTCAGAACCGAAGAGATTGACGTTCTTC
GCAACGAACGGGAACAGCTCCTCAAAGATGCCATGGAAAAGGTGAAAGTC
GTCTGCGGTGGAACCCTCACGCAGAACGGAAACATCTCTGAAGACCAAAT
GATTTCTGTCTTTGCTGATTACGAGACAAAAATTAGAGAGGAGATGACCA
TAACCCGACTAGAAACCGAACTCGATGTGAGGGTTGGGCAGGCCATAGAG
GAAGAGAAAAAGCATGCCagtctcctgaagaaaaccgccgccgaggccga
tgaagcagaaccttctactgaggttgatcggctgcggaaggaggtgcagg
cTCTTCGAAAGGACATGATCAAATTTAAGAAGACTCAACCTCAACCTAAG
AACAATACGAAGAGTG
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protein sequence of Gvermi1265.t1

>Gvermi1265.t1 ID=Gvermi1265.t1|Name=Gvermi1265.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=256bp
MPPRTRSSSMEREESAPIEPSAPPMVNPVSEGLGDPMVFEAVKPRLDKFF
APSRKRIQKLDEKIARKNLLLKNLGKHKEDGTLPKTVLVPRMPLIPESLK
DKFTDEYKSMSEKFAKDTLEFLFKVRTEEIDVLRNEREQLLKDAMEKVKV
VCGGTLTQNGNISEDQMISVFADYETKIREEMTITRLETELDVRVGQAIE
EEKKHASLLKKTAAEADEAEPSTEVDRLRKEVQALRKDMIKFKKTQPQPK
NNTKSX
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mRNA from alignment at ScGOVlb_1984:86..851+

Legend: start_codonpolypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1265.t1 ID=Gvermi1265.t1|Name=Gvermi1265.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=766bp|location=Sequence derived from alignment at ScGOVlb_1984:86..851+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTCCTCGCACTAGGAGTTCAAGTATGGAGCGGGAAGAATCAGCTCC
AATTGAGCCCAGTGCTCCGCCTATGGTGAACCCAGTCTCCGAAGGACTTG
GGGATCCGATGGTCTTTGAGGCCGTGAAGCCACGCTTGGATAAGTTTTTC
GCTCCATCTCGCAAGCGAATCCAAAAACTGGACGAAAAGATCGCTCGTAA
AAATCTTCTTTTGAAGAACTTGGGTAAGCATAAAGAGGATGGGACTCTCC
CGAAAACCGTACTGGTTCCTCGAATGCCACTGATACCCGAGAGTCTAAAA
GACAAATTCACTGATGAGTACAAGTCCATGTCAGAGAAGTTTGCAAAAGA
CACTCTGGAGTTCCTCTTCAAAGTCAGAACCGAAGAGATTGACGTTCTTC
GCAACGAACGGGAACAGCTCCTCAAAGATGCCATGGAAAAGGTGAAAGTC
GTCTGCGGTGGAACCCTCACGCAGAACGGAAACATCTCTGAAGACCAAAT
GATTTCTGTCTTTGCTGATTACGAGACAAAAATTAGAGAGGAGATGACCA
TAACCCGACTAGAAACCGAACTCGATGTGAGGGTTGGGCAGGCCATAGAG
GAAGAGAAAAAGCATGCCagtctcctgaagaaaaccgccgccgaggccga
tgaagcagaaccttctactgaggttgatcggctgcggaaggaggtgcagg
cTCTTCGAAAGGACATGATCAAATTTAAGAAGACTCAACCTCAACCTAAG
AACAATACGAAGAGTG
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Coding sequence (CDS) from alignment at ScGOVlb_1984:86..851+

>Gvermi1265.t1 ID=Gvermi1265.t1|Name=Gvermi1265.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=766bp|location=Sequence derived from alignment at ScGOVlb_1984:86..851+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTCCTCGCACTAGGAGTTCAAGTATGGAGCGGGAAGAATCAGCTCC
AATTGAGCCCAGTGCTCCGCCTATGGTGAACCCAGTCTCCGAAGGACTTG
GGGATCCGATGGTCTTTGAGGCCGTGAAGCCACGCTTGGATAAGTTTTTC
GCTCCATCTCGCAAGCGAATCCAAAAACTGGACGAAAAGATCGCTCGTAA
AAATCTTCTTTTGAAGAACTTGGGTAAGCATAAAGAGGATGGGACTCTCC
CGAAAACCGTACTGGTTCCTCGAATGCCACTGATACCCGAGAGTCTAAAA
GACAAATTCACTGATGAGTACAAGTCCATGTCAGAGAAGTTTGCAAAAGA
CACTCTGGAGTTCCTCTTCAAAGTCAGAACCGAAGAGATTGACGTTCTTC
GCAACGAACGGGAACAGCTCCTCAAAGATGCCATGGAAAAGGTGAAAGTC
GTCTGCGGTGGAACCCTCACGCAGAACGGAAACATCTCTGAAGACCAAAT
GATTTCTGTCTTTGCTGATTACGAGACAAAAATTAGAGAGGAGATGACCA
TAACCCGACTAGAAACCGAACTCGATGTGAGGGTTGGGCAGGCCATAGAG
GAAGAGAAAAAGCATGCCagtctcctgaagaaaaccgccgccgaggccga
tgaagcagaaccttctactgaggttgatcggctgcggaaggaggtgcagg
cTCTTCGAAAGGACATGATCAAATTTAAGAAGACTCAACCTCAACCTAAG
AACAATACGAAGAGTG
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