Gvermi12637.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12637.t1
Unique NameGvermi12637.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length76
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_9207contigScGOVlb_9207:1..228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12637Gvermi12637Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_9207 1..228 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12637.t1.CDS1Gvermi12637.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_9207 1..228 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12637.t1.exon1Gvermi12637.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_9207 1..228 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12637.t1.start1Gvermi12637.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_9207 226..228 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12637.t1Gvermi12637.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_9207 1..228 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12637.t1 ID=Gvermi12637.t1|Name=Gvermi12637.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=76bp
MMKAGSGLTNKVDVALKDNDVVAFECRKTRSQKVGFMATIAYNGKLYRTG
INRFTTREGFSKWNKWEQQGWNAVKQ
back to top

spliced messenger RNA

>Gvermi12637.t1 ID=Gvermi12637.t1|Name=Gvermi12637.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=228bp|location=Sequence derived from alignment at ScGOVlb_9207:1..228- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGAAGGCCGGGTCCGGGCTTACCAATAAAGTCGACGTTGCGCTCAA
AGACAACGACGTCGTTGCTTTCGAGTGCAGAAAGACCCGCAGCCAAAAGG
TTGGCTTCATGGCCACAATCGCGTACAACGGCAAGCTGTACCGCACCGGC
ATCAATCGGTTCACCACGCGCGAAGGCTTTTCAAAGTGGAACAAGTGGGA
ACAGCAAGGGTGGAACGCCGTCAAACAA
back to top

protein sequence of Gvermi12637.t1

>Gvermi12637.t1 ID=Gvermi12637.t1|Name=Gvermi12637.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=76bp
MMKAGSGLTNKVDVALKDNDVVAFECRKTRSQKVGFMATIAYNGKLYRTG
INRFTTREGFSKWNKWEQQGWNAVKQ
back to top

mRNA from alignment at ScGOVlb_9207:1..228-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12637.t1 ID=Gvermi12637.t1|Name=Gvermi12637.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=228bp|location=Sequence derived from alignment at ScGOVlb_9207:1..228- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGAAGGCCGGGTCCGGGCTTACCAATAAAGTCGACGTTGCGCTCAA
AGACAACGACGTCGTTGCTTTCGAGTGCAGAAAGACCCGCAGCCAAAAGG
TTGGCTTCATGGCCACAATCGCGTACAACGGCAAGCTGTACCGCACCGGC
ATCAATCGGTTCACCACGCGCGAAGGCTTTTCAAAGTGGAACAAGTGGGA
ACAGCAAGGGTGGAACGCCGTCAAACAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_9207:1..228-

>Gvermi12637.t1 ID=Gvermi12637.t1|Name=Gvermi12637.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=228bp|location=Sequence derived from alignment at ScGOVlb_9207:1..228- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGAAGGCCGGGTCCGGGCTTACCAATAAAGTCGACGTTGCGCTCAA
AGACAACGACGTCGTTGCTTTCGAGTGCAGAAAGACCCGCAGCCAAAAGG
TTGGCTTCATGGCCACAATCGCGTACAACGGCAAGCTGTACCGCACCGGC
ATCAATCGGTTCACCACGCGCGAAGGCTTTTCAAAGTGGAACAAGTGGGA
ACAGCAAGGGTGGAACGCCGTCAAACAA
back to top