Gvermi12516.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12516.t1
Unique NameGvermi12516.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length662
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:6028074..6030141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX41926
PFAMsPeptidase_M3,Peptidase_M3_N
Max annot lvl2759|Eukaryota
Evalue1.44e-77
EggNOG OGsCOG1164@1|root,2S7HH@2759|Eukaryota
DescriptionPeptidase family M3
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12516Gvermi12516Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 6028074..6030141 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12516.t1Gvermi12516.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 6028074..6030141 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12516.t1.stop1Gvermi12516.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 6028074..6028076 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12516.t1.CDS1Gvermi12516.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 6028074..6028854 -
Gvermi12516.t1.CDS2Gvermi12516.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 6028937..6030141 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12516.t1.exon1Gvermi12516.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 6028074..6028854 -
Gvermi12516.t1.exon2Gvermi12516.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 6028937..6030141 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12516.t1.intron1Gvermi12516.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 6028855..6028936 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12516.t1.start1Gvermi12516.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 6030139..6030141 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12516.t1 ID=Gvermi12516.t1|Name=Gvermi12516.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=662bp
MAYAPIRAVWLVVFILPIFATINYASLDDCSSSDNPYAGRPWVLPYKSTQ
DDRLRQNLQDAEMCRKMLDLIGSHIKPLVDRVADISLEEARKVGLIEHLV
SMNKEYWKGSVLLFDAATYSLERLSADGTDEEAHEFQAEVGSIMVPFTQA
YLPAAIILKLCKEEVFEEFINSDDSAKEAEFYLRQTRKMKLHTLSLPEEN
IITAFSAPGYTAWNTLWAESSTAFKVNLTVDNEEKEMGLSAIISYNDNPD
PDLRKRAWLAEREGWLSLDVPLAAALNSITKWRSTNDKLRNQTSLTETLA
AARMELSSHDSMFKMIRKQASRNSRALLTHAETWGKSVLDPWDIWASSPF
ETEEDLVPYDKAIDLIAEAVGAYIPEAGDFVRRMRDEELIEGSITDTKKS
GSHCAYFPVDGIPVVYMDSYSGSRVKLNTLAHELGHAYHVEVMKKLPFSQ
KIFGLNLAETASLFFEAIMDDWSLIDAEGKQATALVSAHYRTTRRVVDYM
SHRPTRFEFEAKMHNHRGKLSKTVVNDLMVEAWRDYYGANLKSLDQMGYF
AYKTLHYYKTDTPFYNWQYTFGYLMAEKLLAKCKSNKDYCHQIHNDFFMD
TGRMTTEDVVQKHLQYNILEDTIWDELAETVELKISRFEEEWAFFQARKG
DSQTSKCHDPK*
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spliced messenger RNA

>Gvermi12516.t1 ID=Gvermi12516.t1|Name=Gvermi12516.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1986bp|location=Sequence derived from alignment at ScGOVlb_3404:6028074..6030141- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTATGCTCCAATCAGAGCTGTCTGGCTCGTCGTCTTTATTCTGCC
CATCTTCGCTACCATCAACTATGCTTCTCTCGATGATTGTTCTTCTTCAG
ATAACCCCTATGCAGGTCGTCCCTGGGTCCTGCCCTACAAGTCCACCCAA
GATGACAGATTGCGTCAAAATCTTCAAGATGCTGAGATGTGCCGTAAAAT
GCTAGACCTCATCGGATCTCACATTAAACCTCTCGTCGATCGTGTTGCCG
ATATTTCCCTCGAAGAAGCACGCAAAGTGGGACTCATTGAGCACCTGGTC
TCTATGAACAAGGAGTACTGGAAAGGAAGTGTCCTTCTTTTCGACGCGGC
TACCTACTCCTTAGAGCGACTGAGTGCCGACGGTACAGATGAAGAAGCAC
ATGAATTCCAAGCTGAGGTGGGCAGCATCATGGTCCCGTTCACGCAGGCG
TATTTGCCGGCTGCCATCATTCTCAAACTATGCAAGGAAGAAGTGTTCGA
AGAATTTATTAACAGTGATGATTCAGCCAAGGAGGCCGAGTTTTACCTCC
GCCAAACTCGCAAGATGAAGCTGCACACGCTGTCCTTGCCCGAGGAGAAT
ATCATCACCGCTTTTTCAGCCCCCGGATACACCGCATGGAACACACTTTG
GGCCGAGTCCAGTACAGCGTTCAAGGTCAACCTCACGGTGGACAATGAGG
AGAAGGAAATGGGGTTGTCAGCTATCATTTCCTACAACGACAATCCCGAT
CCAGATCTTCGCAAGAGAGCCTGGTTAGCAGAGCGTGAAGGGTGGCTTTC
TCTTGATGTACCTCTCGCAGCGGCTCTTAATTCTATTACCAAGTGGCGTT
CAACCAACGATAAACTTCGAAATCAAACGTCTCTCACGGAGACACTTGCT
GCAGCTCGTATGGAACTCTCGTCGCACGATTCCATGTTTAAGATGATCCG
AAAACAGGCATCGAGGAACAGTCGTGCGCTTCTAACTCATGCAGAAACAT
GGGGAAAATCGGTGCTGGATCCTTGGGATATTTGGGCATCGTCTCCCTTC
GAGACGGAAGAAGACCTGGTTCCCTACGACAAAGCAATCGACCTCATCGC
TGAAGCAGTGGGAGCGTATATTCCAGAAGCTGGCGACTTTGTGAGACGTA
TGAGAGATGAGGAATTGATCGAAGGTTCTATTACGGACACTAAGAAATCT
GGATCTCATTGTGCCTATTTCCCTGTCGATGGAATTCCTGTTGTGTACAT
GGATTCTTACAGTGGTAGTCGAGTGAAATTGAACACTCTTGCTCATGAGC
TGGGCCACGCTTATCACGTAGAAGTAATGAAGAAACTACCTTTCTCTCAA
AAAATATTTGGATTGAATCTTGCCGAGACAGCCAGTTTATTCTTCGAAGC
GATTATGGACGACTGGTCATTGATTGACGCTGAAGGTAAGCAGGCGACAG
CATTAGTGTCGGCTCATTACAGAACGACGAGGAGAGTTGTTGATTACATG
TCGCATCGCCCGACGAGATTCGAATTTGAGGCCAAAATGCACAACCACAG
AGGCAAACTGTCCAAAACGGTTGTTAATGATCTGATGGTGGAAGCCTGGC
GTGATTACTATGGCGCCAACTTGAAAAGTCTCGATCAGATGGGATACTTT
GCTTACAAAACCCTCCACTACTACAAGACCGACACTCCATTTTATAACTG
GCAGTACACATTTGGTTACCTGATGGCAGAAAAGTTGCTCGCAAAGTGCA
AATCGAATAAGGACTACTGCCACCAGATTCACAACGACTTTTTCATGGAT
ACGGGCAGAATGACCACCGAAGACGTGGTACAGAAACATCTGCAGTACAA
CATCTTGGAAGATACTATTTGGGACGAATTAGCGGAGACGGTCGAATTGA
AAATTAGCCGCTTCGAGGAGGAATGGGCATTTTTTCAAGCGAGAAAGGGA
GACTCTCAGACTAGTAAGTGCCATGACCCAAAGTAG
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protein sequence of Gvermi12516.t1

>Gvermi12516.t1 ID=Gvermi12516.t1|Name=Gvermi12516.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=662bp
MAYAPIRAVWLVVFILPIFATINYASLDDCSSSDNPYAGRPWVLPYKSTQ
DDRLRQNLQDAEMCRKMLDLIGSHIKPLVDRVADISLEEARKVGLIEHLV
SMNKEYWKGSVLLFDAATYSLERLSADGTDEEAHEFQAEVGSIMVPFTQA
YLPAAIILKLCKEEVFEEFINSDDSAKEAEFYLRQTRKMKLHTLSLPEEN
IITAFSAPGYTAWNTLWAESSTAFKVNLTVDNEEKEMGLSAIISYNDNPD
PDLRKRAWLAEREGWLSLDVPLAAALNSITKWRSTNDKLRNQTSLTETLA
AARMELSSHDSMFKMIRKQASRNSRALLTHAETWGKSVLDPWDIWASSPF
ETEEDLVPYDKAIDLIAEAVGAYIPEAGDFVRRMRDEELIEGSITDTKKS
GSHCAYFPVDGIPVVYMDSYSGSRVKLNTLAHELGHAYHVEVMKKLPFSQ
KIFGLNLAETASLFFEAIMDDWSLIDAEGKQATALVSAHYRTTRRVVDYM
SHRPTRFEFEAKMHNHRGKLSKTVVNDLMVEAWRDYYGANLKSLDQMGYF
AYKTLHYYKTDTPFYNWQYTFGYLMAEKLLAKCKSNKDYCHQIHNDFFMD
TGRMTTEDVVQKHLQYNILEDTIWDELAETVELKISRFEEEWAFFQARKG
DSQTSKCHDPK*
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mRNA from alignment at ScGOVlb_3404:6028074..6030141-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12516.t1 ID=Gvermi12516.t1|Name=Gvermi12516.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2068bp|location=Sequence derived from alignment at ScGOVlb_3404:6028074..6030141- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTATGCTCCAATCAGAGCTGTCTGGCTCGTCGTCTTTATTCTGCC
CATCTTCGCTACCATCAACTATGCTTCTCTCGATGATTGTTCTTCTTCAG
ATAACCCCTATGCAGGTCGTCCCTGGGTCCTGCCCTACAAGTCCACCCAA
GATGACAGATTGCGTCAAAATCTTCAAGATGCTGAGATGTGCCGTAAAAT
GCTAGACCTCATCGGATCTCACATTAAACCTCTCGTCGATCGTGTTGCCG
ATATTTCCCTCGAAGAAGCACGCAAAGTGGGACTCATTGAGCACCTGGTC
TCTATGAACAAGGAGTACTGGAAAGGAAGTGTCCTTCTTTTCGACGCGGC
TACCTACTCCTTAGAGCGACTGAGTGCCGACGGTACAGATGAAGAAGCAC
ATGAATTCCAAGCTGAGGTGGGCAGCATCATGGTCCCGTTCACGCAGGCG
TATTTGCCGGCTGCCATCATTCTCAAACTATGCAAGGAAGAAGTGTTCGA
AGAATTTATTAACAGTGATGATTCAGCCAAGGAGGCCGAGTTTTACCTCC
GCCAAACTCGCAAGATGAAGCTGCACACGCTGTCCTTGCCCGAGGAGAAT
ATCATCACCGCTTTTTCAGCCCCCGGATACACCGCATGGAACACACTTTG
GGCCGAGTCCAGTACAGCGTTCAAGGTCAACCTCACGGTGGACAATGAGG
AGAAGGAAATGGGGTTGTCAGCTATCATTTCCTACAACGACAATCCCGAT
CCAGATCTTCGCAAGAGAGCCTGGTTAGCAGAGCGTGAAGGGTGGCTTTC
TCTTGATGTACCTCTCGCAGCGGCTCTTAATTCTATTACCAAGTGGCGTT
CAACCAACGATAAACTTCGAAATCAAACGTCTCTCACGGAGACACTTGCT
GCAGCTCGTATGGAACTCTCGTCGCACGATTCCATGTTTAAGATGATCCG
AAAACAGGCATCGAGGAACAGTCGTGCGCTTCTAACTCATGCAGAAACAT
GGGGAAAATCGGTGCTGGATCCTTGGGATATTTGGGCATCGTCTCCCTTC
GAGACGGAAGAAGACCTGGTTCCCTACGACAAAGCAATCGACCTCATCGC
TGAAGCAGTGGGAGCGTATATTCCAGAAGCTGGCGACTTTGTGAGACGTA
TGAGAGATGAGGAATTGATCGAAGGTTCTATTACGGACACTAAGAAATCT
GGATCGTAAGTGCACGAAACCAAGAAGAATTTTCCAATGACTAATCTTCT
GACATATTACTTTGCTTTCTCTCGTTTCTTCGAACAGTCATTGTGCCTAT
TTCCCTGTCGATGGAATTCCTGTTGTGTACATGGATTCTTACAGTGGTAG
TCGAGTGAAATTGAACACTCTTGCTCATGAGCTGGGCCACGCTTATCACG
TAGAAGTAATGAAGAAACTACCTTTCTCTCAAAAAATATTTGGATTGAAT
CTTGCCGAGACAGCCAGTTTATTCTTCGAAGCGATTATGGACGACTGGTC
ATTGATTGACGCTGAAGGTAAGCAGGCGACAGCATTAGTGTCGGCTCATT
ACAGAACGACGAGGAGAGTTGTTGATTACATGTCGCATCGCCCGACGAGA
TTCGAATTTGAGGCCAAAATGCACAACCACAGAGGCAAACTGTCCAAAAC
GGTTGTTAATGATCTGATGGTGGAAGCCTGGCGTGATTACTATGGCGCCA
ACTTGAAAAGTCTCGATCAGATGGGATACTTTGCTTACAAAACCCTCCAC
TACTACAAGACCGACACTCCATTTTATAACTGGCAGTACACATTTGGTTA
CCTGATGGCAGAAAAGTTGCTCGCAAAGTGCAAATCGAATAAGGACTACT
GCCACCAGATTCACAACGACTTTTTCATGGATACGGGCAGAATGACCACC
GAAGACGTGGTACAGAAACATCTGCAGTACAACATCTTGGAAGATACTAT
TTGGGACGAATTAGCGGAGACGGTCGAATTGAAAATTAGCCGCTTCGAGG
AGGAATGGGCATTTTTTCAAGCGAGAAAGGGAGACTCTCAGACTAGTAAG
TGCCATGACCCAAAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:6028074..6030141-

>Gvermi12516.t1 ID=Gvermi12516.t1|Name=Gvermi12516.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1986bp|location=Sequence derived from alignment at ScGOVlb_3404:6028074..6030141- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTATGCTCCAATCAGAGCTGTCTGGCTCGTCGTCTTTATTCTGCC
CATCTTCGCTACCATCAACTATGCTTCTCTCGATGATTGTTCTTCTTCAG
ATAACCCCTATGCAGGTCGTCCCTGGGTCCTGCCCTACAAGTCCACCCAA
GATGACAGATTGCGTCAAAATCTTCAAGATGCTGAGATGTGCCGTAAAAT
GCTAGACCTCATCGGATCTCACATTAAACCTCTCGTCGATCGTGTTGCCG
ATATTTCCCTCGAAGAAGCACGCAAAGTGGGACTCATTGAGCACCTGGTC
TCTATGAACAAGGAGTACTGGAAAGGAAGTGTCCTTCTTTTCGACGCGGC
TACCTACTCCTTAGAGCGACTGAGTGCCGACGGTACAGATGAAGAAGCAC
ATGAATTCCAAGCTGAGGTGGGCAGCATCATGGTCCCGTTCACGCAGGCG
TATTTGCCGGCTGCCATCATTCTCAAACTATGCAAGGAAGAAGTGTTCGA
AGAATTTATTAACAGTGATGATTCAGCCAAGGAGGCCGAGTTTTACCTCC
GCCAAACTCGCAAGATGAAGCTGCACACGCTGTCCTTGCCCGAGGAGAAT
ATCATCACCGCTTTTTCAGCCCCCGGATACACCGCATGGAACACACTTTG
GGCCGAGTCCAGTACAGCGTTCAAGGTCAACCTCACGGTGGACAATGAGG
AGAAGGAAATGGGGTTGTCAGCTATCATTTCCTACAACGACAATCCCGAT
CCAGATCTTCGCAAGAGAGCCTGGTTAGCAGAGCGTGAAGGGTGGCTTTC
TCTTGATGTACCTCTCGCAGCGGCTCTTAATTCTATTACCAAGTGGCGTT
CAACCAACGATAAACTTCGAAATCAAACGTCTCTCACGGAGACACTTGCT
GCAGCTCGTATGGAACTCTCGTCGCACGATTCCATGTTTAAGATGATCCG
AAAACAGGCATCGAGGAACAGTCGTGCGCTTCTAACTCATGCAGAAACAT
GGGGAAAATCGGTGCTGGATCCTTGGGATATTTGGGCATCGTCTCCCTTC
GAGACGGAAGAAGACCTGGTTCCCTACGACAAAGCAATCGACCTCATCGC
TGAAGCAGTGGGAGCGTATATTCCAGAAGCTGGCGACTTTGTGAGACGTA
TGAGAGATGAGGAATTGATCGAAGGTTCTATTACGGACACTAAGAAATCT
GGATCTCATTGTGCCTATTTCCCTGTCGATGGAATTCCTGTTGTGTACAT
GGATTCTTACAGTGGTAGTCGAGTGAAATTGAACACTCTTGCTCATGAGC
TGGGCCACGCTTATCACGTAGAAGTAATGAAGAAACTACCTTTCTCTCAA
AAAATATTTGGATTGAATCTTGCCGAGACAGCCAGTTTATTCTTCGAAGC
GATTATGGACGACTGGTCATTGATTGACGCTGAAGGTAAGCAGGCGACAG
CATTAGTGTCGGCTCATTACAGAACGACGAGGAGAGTTGTTGATTACATG
TCGCATCGCCCGACGAGATTCGAATTTGAGGCCAAAATGCACAACCACAG
AGGCAAACTGTCCAAAACGGTTGTTAATGATCTGATGGTGGAAGCCTGGC
GTGATTACTATGGCGCCAACTTGAAAAGTCTCGATCAGATGGGATACTTT
GCTTACAAAACCCTCCACTACTACAAGACCGACACTCCATTTTATAACTG
GCAGTACACATTTGGTTACCTGATGGCAGAAAAGTTGCTCGCAAAGTGCA
AATCGAATAAGGACTACTGCCACCAGATTCACAACGACTTTTTCATGGAT
ACGGGCAGAATGACCACCGAAGACGTGGTACAGAAACATCTGCAGTACAA
CATCTTGGAAGATACTATTTGGGACGAATTAGCGGAGACGGTCGAATTGA
AAATTAGCCGCTTCGAGGAGGAATGGGCATTTTTTCAAGCGAGAAAGGGA
GACTCTCAGACTAGTAAGTGCCATGACCCAAAGTAG
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