Gvermi12514.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12514.t1
Unique Name	Gvermi12514.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	538

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:6000093..6001706 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1463900.JOIX01000021_gene7265
PFAMs	GMC_oxred_C,GMC_oxred_N
Max annot lvl	201174\|Actinobacteria
KEGG rclass	RC00087
KEGG ko	ko:K00108
KEGG Reaction	R01025
KEGG Pathway	ko00260,ko01100,map00260,map01100
KEGG Module	M00555
Evalue	3.36e-32
EggNOG OGs	COG2303@1\|root,COG2303@2\|Bacteria,2GJAU@201174\|Actinobacteria
EC	1.1.99.1
Description	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12514	Gvermi12514	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 6000093..6001706 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12514.t1.start1	Gvermi12514.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 6000093..6000095 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12514.t1.CDS1	Gvermi12514.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 6000093..6001706 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12514.t1.exon1	Gvermi12514.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 6000093..6001706 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12514.t1.stop1	Gvermi12514.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 6001704..6001706 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12514.t1	Gvermi12514.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 6000093..6001706 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:6000093..6001706+
coding sequence from alignment at ScGOVlb_3404:6000093..6001706+

mRNA sequence

>Gvermi12514.t1 ID=Gvermi12514.t1|Name=Gvermi12514.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=538bp
MRAHLLMFCVLLLQLIFPLHAAAAQHTAHIVIAGAGTAGCPLAARLCVAL
PHKKITLLERAAPRSAQAEFFVRAPRNLFSTWSAPELLETFPSLVNPALN
RSHDVLTGRTLGGTSAITGMQWSVPLNGSIEDWRIHGLDTAIAAQYFQRA
YDQLSVSPPRQRLRYAQAYVDAAVRSGLRRSSHHLDGEMRAVWHNFLTID
RNLRRTDACSAYIQPLLNGACKHNLHLVQNVTVTSVRFSRRHRGGQLQAT
GVHALQTLPNNSSVQRTFVARDETILSAGPYGSAKILQLSGIGPADVLRA
ANVSVRVELPVGQNTLCSSSIGVSSVYTGVPNEPVNNFTLVNDPQQRKRW
ERGESSVLGTAVSAANGRVGADGYFGSSFVPFWPDVPEVYSYCHLNSQSR
GFMAIRDANPFSPPIVQNNLMGTPGEYNRIRRCLEQLVSIHNHFPPHFNM
SFTKPEHGQISEDWVRRQLNTGAHFVGACPVGDVVDGHLRVRGVQSLRVI
DSSVLRDLPQSAGPMASVVMVAEFMSDAISKQYQEPC*

spliced messenger RNA

>Gvermi12514.t1 ID=Gvermi12514.t1|Name=Gvermi12514.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at ScGOVlb_3404:6000093..6001706+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCCCACTTGCTCATGTTCTGTGTGTTGCTCCTGCAGCTGATCTT
CCCGTTGCATGCCGCTGCAGCGCAGCACACGGCCCACATCGTCATCGCCG
GTGCCGGCACTGCCGGTTGTCCGCTTGCCGCACGTCTCTGCGTCGCCCTT
CCTCACAAGAAGATCACGCTGCTGGAGCGCGCCGCTCCACGTTCTGCACA
AGCCGAGTTCTTCGTTCGCGCGCCACGAAACCTGTTCTCAACTTGGTCAG
CGCCCGAGTTGCTTGAAACCTTTCCCTCGCTCGTCAATCCCGCACTCAAC
AGGTCGCATGACGTGCTCACCGGTCGAACACTCGGCGGCACCTCCGCCAT
CACCGGCATGCAGTGGAGCGTCCCGCTGAACGGTTCCATTGAGGACTGGC
GCATTCACGGCCTTGACACTGCTATTGCTGCGCAATACTTCCAGCGCGCT
TACGACCAACTGTCTGTTTCACCGCCTCGTCAGCGCCTTCGTTACGCGCA
GGCGTATGTAGACGCCGCCGTGCGCTCTGGCTTGCGCCGCTCATCACATC
ATCTAGACGGAGAAATGCGCGCTGTTTGGCACAATTTTCTCACCATCGAT
CGCAACCTCCGTCGCACCGACGCCTGCAGCGCCTACATCCAACCGTTGTT
GAACGGCGCCTGTAAACACAACCtgcatctagttcaaaacgtcaccgtca
catccgtgcgctttagtcgtcgtcaccgaggcggacaattgcaagctact
ggtgtgcacgccttgcaaacgctgccaaacaactcttcggtgcagaggac
atttgtggcccgcgacgagaccattctgtcggcaggcccttacggcagtg
ccaaaatcctgcagctgtcgggcatcggacccgcggacgtgctgcgcgcc
gccaacgtgtcggttcgagtgGAGTTGCCGGTGGGACAGAACACTTTGTG
CAGTTCGTCAATTGGTGTATCGTCCGTGTACACCGGCGTTCCCAACGAGC
CTGTCAACAACTTTACGCTCGTCAATGACCCGCAGCAACGCAAAAGATGG
GAGCGAGGTGAATCAAGCGTGCTGGGCACCGCTGTGTCAGCGGCTAACGG
CCGCGTCGGCGCCGATGGCTACTTCGGGTCGTCTTTCGTCCCCTTTTGGC
CGGACGTCCCGGAAGTGTACTCCTACTGCCATCTCAACTCGCAGTCGAGG
GGCTTCATGGCAATCCGCGACGCGAACCCATTCTCGCCCCCCATCGTGCA
GAACAATCTCATGGGCACGCCGGGCGAGTACAATCGCATTCGACGTTGTC
TTGAACAGCTTGTCAGCATTCACAATCACTTTCCGCCGCATTTCAACATG
AGCTTCACCAAGCCAGAGCACGGCCAAATCTCTGAGGACTGGGTGCGACG
CCAACTTAACACGGGGGCACATTTCGTCGGCGCATGCCCTGTTGGCGACG
TTGTTGATGGCCATTTGCGAGTAAGAGGTGTGCAATCTCTGCGCGTCATT
GATTCTTCTGTGCTAAGAGATttgccacagtccgccggccctatggcgtc
ggtggttatggtcgcagagttcatgtcagatgcgatatccaagcaatatc
aagagccgtgttga

protein sequence of Gvermi12514.t1

>Gvermi12514.t1 ID=Gvermi12514.t1|Name=Gvermi12514.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=538bp
MRAHLLMFCVLLLQLIFPLHAAAAQHTAHIVIAGAGTAGCPLAARLCVAL
PHKKITLLERAAPRSAQAEFFVRAPRNLFSTWSAPELLETFPSLVNPALN
RSHDVLTGRTLGGTSAITGMQWSVPLNGSIEDWRIHGLDTAIAAQYFQRA
YDQLSVSPPRQRLRYAQAYVDAAVRSGLRRSSHHLDGEMRAVWHNFLTID
RNLRRTDACSAYIQPLLNGACKHNLHLVQNVTVTSVRFSRRHRGGQLQAT
GVHALQTLPNNSSVQRTFVARDETILSAGPYGSAKILQLSGIGPADVLRA
ANVSVRVELPVGQNTLCSSSIGVSSVYTGVPNEPVNNFTLVNDPQQRKRW
ERGESSVLGTAVSAANGRVGADGYFGSSFVPFWPDVPEVYSYCHLNSQSR
GFMAIRDANPFSPPIVQNNLMGTPGEYNRIRRCLEQLVSIHNHFPPHFNM
SFTKPEHGQISEDWVRRQLNTGAHFVGACPVGDVVDGHLRVRGVQSLRVI
DSSVLRDLPQSAGPMASVVMVAEFMSDAISKQYQEPC*

mRNA from alignment at ScGOVlb_3404:6000093..6001706+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12514.t1 ID=Gvermi12514.t1|Name=Gvermi12514.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at ScGOVlb_3404:6000093..6001706+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGCCCACTTGCTCATGTTCTGTGTGTTGCTCCTGCAGCTGATCTT
CCCGTTGCATGCCGCTGCAGCGCAGCACACGGCCCACATCGTCATCGCCG
GTGCCGGCACTGCCGGTTGTCCGCTTGCCGCACGTCTCTGCGTCGCCCTT
CCTCACAAGAAGATCACGCTGCTGGAGCGCGCCGCTCCACGTTCTGCACA
AGCCGAGTTCTTCGTTCGCGCGCCACGAAACCTGTTCTCAACTTGGTCAG
CGCCCGAGTTGCTTGAAACCTTTCCCTCGCTCGTCAATCCCGCACTCAAC
AGGTCGCATGACGTGCTCACCGGTCGAACACTCGGCGGCACCTCCGCCAT
CACCGGCATGCAGTGGAGCGTCCCGCTGAACGGTTCCATTGAGGACTGGC
GCATTCACGGCCTTGACACTGCTATTGCTGCGCAATACTTCCAGCGCGCT
TACGACCAACTGTCTGTTTCACCGCCTCGTCAGCGCCTTCGTTACGCGCA
GGCGTATGTAGACGCCGCCGTGCGCTCTGGCTTGCGCCGCTCATCACATC
ATCTAGACGGAGAAATGCGCGCTGTTTGGCACAATTTTCTCACCATCGAT
CGCAACCTCCGTCGCACCGACGCCTGCAGCGCCTACATCCAACCGTTGTT
GAACGGCGCCTGTAAACACAACCtgcatctagttcaaaacgtcaccgtca
catccgtgcgctttagtcgtcgtcaccgaggcggacaattgcaagctact
ggtgtgcacgccttgcaaacgctgccaaacaactcttcggtgcagaggac
atttgtggcccgcgacgagaccattctgtcggcaggcccttacggcagtg
ccaaaatcctgcagctgtcgggcatcggacccgcggacgtgctgcgcgcc
gccaacgtgtcggttcgagtgGAGTTGCCGGTGGGACAGAACACTTTGTG
CAGTTCGTCAATTGGTGTATCGTCCGTGTACACCGGCGTTCCCAACGAGC
CTGTCAACAACTTTACGCTCGTCAATGACCCGCAGCAACGCAAAAGATGG
GAGCGAGGTGAATCAAGCGTGCTGGGCACCGCTGTGTCAGCGGCTAACGG
CCGCGTCGGCGCCGATGGCTACTTCGGGTCGTCTTTCGTCCCCTTTTGGC
CGGACGTCCCGGAAGTGTACTCCTACTGCCATCTCAACTCGCAGTCGAGG
GGCTTCATGGCAATCCGCGACGCGAACCCATTCTCGCCCCCCATCGTGCA
GAACAATCTCATGGGCACGCCGGGCGAGTACAATCGCATTCGACGTTGTC
TTGAACAGCTTGTCAGCATTCACAATCACTTTCCGCCGCATTTCAACATG
AGCTTCACCAAGCCAGAGCACGGCCAAATCTCTGAGGACTGGGTGCGACG
CCAACTTAACACGGGGGCACATTTCGTCGGCGCATGCCCTGTTGGCGACG
TTGTTGATGGCCATTTGCGAGTAAGAGGTGTGCAATCTCTGCGCGTCATT
GATTCTTCTGTGCTAAGAGATttgccacagtccgccggccctatggcgtc
ggtggttatggtcgcagagttcatgtcagatgcgatatccaagcaatatc
aagagccgtgttga

Coding sequence (CDS) from alignment at ScGOVlb_3404:6000093..6001706+

>Gvermi12514.t1 ID=Gvermi12514.t1|Name=Gvermi12514.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1614bp|location=Sequence derived from alignment at ScGOVlb_3404:6000093..6001706+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGCCCACTTGCTCATGTTCTGTGTGTTGCTCCTGCAGCTGATCTT
CCCGTTGCATGCCGCTGCAGCGCAGCACACGGCCCACATCGTCATCGCCG
GTGCCGGCACTGCCGGTTGTCCGCTTGCCGCACGTCTCTGCGTCGCCCTT
CCTCACAAGAAGATCACGCTGCTGGAGCGCGCCGCTCCACGTTCTGCACA
AGCCGAGTTCTTCGTTCGCGCGCCACGAAACCTGTTCTCAACTTGGTCAG
CGCCCGAGTTGCTTGAAACCTTTCCCTCGCTCGTCAATCCCGCACTCAAC
AGGTCGCATGACGTGCTCACCGGTCGAACACTCGGCGGCACCTCCGCCAT
CACCGGCATGCAGTGGAGCGTCCCGCTGAACGGTTCCATTGAGGACTGGC
GCATTCACGGCCTTGACACTGCTATTGCTGCGCAATACTTCCAGCGCGCT
TACGACCAACTGTCTGTTTCACCGCCTCGTCAGCGCCTTCGTTACGCGCA
GGCGTATGTAGACGCCGCCGTGCGCTCTGGCTTGCGCCGCTCATCACATC
ATCTAGACGGAGAAATGCGCGCTGTTTGGCACAATTTTCTCACCATCGAT
CGCAACCTCCGTCGCACCGACGCCTGCAGCGCCTACATCCAACCGTTGTT
GAACGGCGCCTGTAAACACAACCtgcatctagttcaaaacgtcaccgtca
catccgtgcgctttagtcgtcgtcaccgaggcggacaattgcaagctact
ggtgtgcacgccttgcaaacgctgccaaacaactcttcggtgcagaggac
atttgtggcccgcgacgagaccattctgtcggcaggcccttacggcagtg
ccaaaatcctgcagctgtcgggcatcggacccgcggacgtgctgcgcgcc
gccaacgtgtcggttcgagtgGAGTTGCCGGTGGGACAGAACACTTTGTG
CAGTTCGTCAATTGGTGTATCGTCCGTGTACACCGGCGTTCCCAACGAGC
CTGTCAACAACTTTACGCTCGTCAATGACCCGCAGCAACGCAAAAGATGG
GAGCGAGGTGAATCAAGCGTGCTGGGCACCGCTGTGTCAGCGGCTAACGG
CCGCGTCGGCGCCGATGGCTACTTCGGGTCGTCTTTCGTCCCCTTTTGGC
CGGACGTCCCGGAAGTGTACTCCTACTGCCATCTCAACTCGCAGTCGAGG
GGCTTCATGGCAATCCGCGACGCGAACCCATTCTCGCCCCCCATCGTGCA
GAACAATCTCATGGGCACGCCGGGCGAGTACAATCGCATTCGACGTTGTC
TTGAACAGCTTGTCAGCATTCACAATCACTTTCCGCCGCATTTCAACATG
AGCTTCACCAAGCCAGAGCACGGCCAAATCTCTGAGGACTGGGTGCGACG
CCAACTTAACACGGGGGCACATTTCGTCGGCGCATGCCCTGTTGGCGACG
TTGTTGATGGCCATTTGCGAGTAAGAGGTGTGCAATCTCTGCGCGTCATT
GATTCTTCTGTGCTAAGAGATttgccacagtccgccggccctatggcgtc
ggtggttatggtcgcagagttcatgtcagatgcgatatccaagcaatatc
aagagccgtgttga