Gvermi12510.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12510.t1
Unique NameGvermi12510.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length292
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5893701..5894862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog164328.Phyra85518
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Max annot lvl4776|Peronosporales
Evalue2.29e-14
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QH4V@4776|Peronosporales
DescriptionGAG-pre-integrase domain
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12510Gvermi12510Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 5893701..5894862 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12510.t1Gvermi12510.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 5893701..5894862 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12510.t1.stop1Gvermi12510.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 5893701..5893703 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12510.t1.CDS1Gvermi12510.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5893701..5894117 -
Gvermi12510.t1.CDS2Gvermi12510.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5894404..5894862 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12510.t1.exon1Gvermi12510.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5893701..5894117 -
Gvermi12510.t1.exon2Gvermi12510.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5894404..5894862 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12510.t1.intron1Gvermi12510.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 5894118..5894403 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12510.t1.start1Gvermi12510.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 5894860..5894862 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12510.t1 ID=Gvermi12510.t1|Name=Gvermi12510.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=292bp
MDIGEKSTFKIEIINGDNYFSWKFGMTNYLKKKGYWKAVGEEENNATANE
KALIDICLSVDDNQNVYVESCKTGTEAWNALAEVYENKGMANKMDPEEHF
TSKRLHEGESAKQHIEELKRLKTKLKKLVMDKTKEEYIMRLLRSLPKIYE
SLVTKEKSMEHGIWTLVHPFNMTNNRKLFMEETLKKPEPVTIRLGDGTHV
NSTEKGSILMEISMNGSMKTLPVQDVLFVPEIATNILSIGKIDERGHRIY
FQKGWCTVLSKHSNEKLLQVKKENSTHCFKSSKKIEEKYVP*
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spliced messenger RNA

>Gvermi12510.t1 ID=Gvermi12510.t1|Name=Gvermi12510.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=876bp|location=Sequence derived from alignment at ScGOVlb_3404:5893701..5894862- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATATAGGAGAGAAAAGCACGTTCAAAATAGAGATAATTAATGGAGA
TAATTATTTCTCTTGGAAATTTGGCATGACAAATTACCTTAAGAAGAAGG
GGTATTGGAAAGCTGTAGGAGAAGAGGAAAATAATGCTACTGCTAATGAG
AAAGCATTAATAGATATTTGTTTATCAGTCGATGATAATCAAAACGTCTA
TGTTGAGTCATGCAAAACCGGTACAGAAGCCTGGAACGCCCTTGCAGAAG
TGTACGAAAATAAGGGTATGGCGAACAAAATGGACCCGGAGGAGCACTTT
ACGTCAAAAAGGCTCCACGAGGGAGAATCAGCCAAACAACATATAGAAGA
ATTAAAACGTCTCAAAACCAAATTGAAAAAGCTCGTGATGGATAAAACAA
AAGAAGAATATATTATGAGATTATTGCGTAGCTTACCAAAAATCTATGAA
AGTTTGGTTACCAAAGAAAAATCTATGGAACATGGTATATGGACTCTGGT
GCATCCTTTTAACATGACCAATAATCGAAAGTTGTTTATGGAGGAAACTT
TAAAAAAACCTGAGCCAGTTACCATCAGACTAGGAGATGGAACCCACGTC
AACTCAACAGAAAAGGGAAGCATACTTATGGAAATTTCTATGAATGGGTC
TATGAAGACACTGCCTGTGCAAGATGTTTTATTTGTCCCGGAAATTGCTA
CGAACATTTTATCTATTGGGAAAATTGATGAACGCGGACATCGAATTTAT
TTTCAAAAAGGGTGGTGCACCGTTCTATCCAAACATTCAAATGAAAAACT
CCTTCAGGTCAAGAAAGAAAATTCTACCCACTGCTTTAAGAGCTCCAAGA
AGATCGAGGAAAAGTATGTACCATAA
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protein sequence of Gvermi12510.t1

>Gvermi12510.t1 ID=Gvermi12510.t1|Name=Gvermi12510.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=292bp
MDIGEKSTFKIEIINGDNYFSWKFGMTNYLKKKGYWKAVGEEENNATANE
KALIDICLSVDDNQNVYVESCKTGTEAWNALAEVYENKGMANKMDPEEHF
TSKRLHEGESAKQHIEELKRLKTKLKKLVMDKTKEEYIMRLLRSLPKIYE
SLVTKEKSMEHGIWTLVHPFNMTNNRKLFMEETLKKPEPVTIRLGDGTHV
NSTEKGSILMEISMNGSMKTLPVQDVLFVPEIATNILSIGKIDERGHRIY
FQKGWCTVLSKHSNEKLLQVKKENSTHCFKSSKKIEEKYVP*
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mRNA from alignment at ScGOVlb_3404:5893701..5894862-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12510.t1 ID=Gvermi12510.t1|Name=Gvermi12510.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1162bp|location=Sequence derived from alignment at ScGOVlb_3404:5893701..5894862- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATATAGGAGAGAAAAGCACGTTCAAAATAGAGATAATTAATGGAGA
TAATTATTTCTCTTGGAAATTTGGCATGACAAATTACCTTAAGAAGAAGG
GGTATTGGAAAGCTGTAGGAGAAGAGGAAAATAATGCTACTGCTAATGAG
AAAGCATTAATAGATATTTGTTTATCAGTCGATGATAATCAAAACGTCTA
TGTTGAGTCATGCAAAACCGGTACAGAAGCCTGGAACGCCCTTGCAGAAG
TGTACGAAAATAAGGGTATGGCGAACAAAATGGACCCGGAGGAGCACTTT
ACGTCAAAAAGGCTCCACGAGGGAGAATCAGCCAAACAACATATAGAAGA
ATTAAAACGTCTCAAAACCAAATTGAAAAAGCTCGTGATGGATAAAACAA
AAGAAGAATATATTATGAGATTATTGCGTAGCTTACCAAAAATCTATGAA
AGTTTGGTTGTTACATTGGAAAATATAGCTGAGTAGCTAAGCATTGAAGA
AATCCACGCTAGAATTTTGCGTGAAGAGTCCAGGCAAAAATCTTCTGAAG
AGCAAGAAAAATCCGGAAGTCTCCTACATGGAAAAGTCAACAAGCAAAAA
TACAAATTTCCCTATATCTTTCACTACTGTGGAAAGAAAAGGCACAAAAG
TGCGCACTGTAGAAAACGCAAAAAGGATACGAAAAATTCTACACAGCCCG
ATACGAGCAACACGTCCTCCGGAAAGTTTTTGATGGCTGAACAAGACCAA
AGAAAAATCTATGGAACATGGTATATGGACTCTGGTGCATCCTTTTAACA
TGACCAATAATCGAAAGTTGTTTATGGAGGAAACTTTAAAAAAACCTGAG
CCAGTTACCATCAGACTAGGAGATGGAACCCACGTCAACTCAACAGAAAA
GGGAAGCATACTTATGGAAATTTCTATGAATGGGTCTATGAAGACACTGC
CTGTGCAAGATGTTTTATTTGTCCCGGAAATTGCTACGAACATTTTATCT
ATTGGGAAAATTGATGAACGCGGACATCGAATTTATTTTCAAAAAGGGTG
GTGCACCGTTCTATCCAAACATTCAAATGAAAAACTCCTTCAGGTCAAGA
AAGAAAATTCTACCCACTGCTTTAAGAGCTCCAAGAAGATCGAGGAAAAG
TATGTACCATAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:5893701..5894862-

>Gvermi12510.t1 ID=Gvermi12510.t1|Name=Gvermi12510.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=876bp|location=Sequence derived from alignment at ScGOVlb_3404:5893701..5894862- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATATAGGAGAGAAAAGCACGTTCAAAATAGAGATAATTAATGGAGA
TAATTATTTCTCTTGGAAATTTGGCATGACAAATTACCTTAAGAAGAAGG
GGTATTGGAAAGCTGTAGGAGAAGAGGAAAATAATGCTACTGCTAATGAG
AAAGCATTAATAGATATTTGTTTATCAGTCGATGATAATCAAAACGTCTA
TGTTGAGTCATGCAAAACCGGTACAGAAGCCTGGAACGCCCTTGCAGAAG
TGTACGAAAATAAGGGTATGGCGAACAAAATGGACCCGGAGGAGCACTTT
ACGTCAAAAAGGCTCCACGAGGGAGAATCAGCCAAACAACATATAGAAGA
ATTAAAACGTCTCAAAACCAAATTGAAAAAGCTCGTGATGGATAAAACAA
AAGAAGAATATATTATGAGATTATTGCGTAGCTTACCAAAAATCTATGAA
AGTTTGGTTACCAAAGAAAAATCTATGGAACATGGTATATGGACTCTGGT
GCATCCTTTTAACATGACCAATAATCGAAAGTTGTTTATGGAGGAAACTT
TAAAAAAACCTGAGCCAGTTACCATCAGACTAGGAGATGGAACCCACGTC
AACTCAACAGAAAAGGGAAGCATACTTATGGAAATTTCTATGAATGGGTC
TATGAAGACACTGCCTGTGCAAGATGTTTTATTTGTCCCGGAAATTGCTA
CGAACATTTTATCTATTGGGAAAATTGATGAACGCGGACATCGAATTTAT
TTTCAAAAAGGGTGGTGCACCGTTCTATCCAAACATTCAAATGAAAAACT
CCTTCAGGTCAAGAAAGAAAATTCTACCCACTGCTTTAAGAGCTCCAAGA
AGATCGAGGAAAAGTATGTACCATAA
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