Gvermi12509.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12509.t1
Unique NameGvermi12509.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length172
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5889756..5892794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12509Gvermi12509Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 5889756..5892794 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12509.t1Gvermi12509.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 5889756..5892794 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12509.t1.stop1Gvermi12509.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 5889756..5889758 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12509.t1.CDS1Gvermi12509.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5889756..5889904 -
Gvermi12509.t1.CDS2Gvermi12509.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5892428..5892794 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12509.t1.exon1Gvermi12509.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5889756..5889904 -
Gvermi12509.t1.exon2Gvermi12509.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5892428..5892794 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12509.t1.intron1Gvermi12509.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 5889905..5892427 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12509.t1.start1Gvermi12509.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 5892792..5892794 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12509.t1 ID=Gvermi12509.t1|Name=Gvermi12509.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=172bp
MEEEISFEPENSKEEEVMLNTSKENDLANSEAYNPPPENEQAPEIIPRRS
GRTRRQPTWLTYKHADENEDTASGAVMMSADETESNNVQEAMSGVQKQYW
TSAMEREINSLYENYTGIWSLEKLPDFLDGVWYYLDRTKYILDFDGDFEV
LVTYEELSASGKSLEPLLNMI*
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spliced messenger RNA

>Gvermi12509.t1 ID=Gvermi12509.t1|Name=Gvermi12509.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=516bp|location=Sequence derived from alignment at ScGOVlb_3404:5889756..5892794- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGAAGAAATTTCTTTTGAACCAGAAAACTCAAAAGAAGAAGAAGT
AATGTTGAACACTAGTAAGGAAAATGATTTGGCAAATTCTGAGGCTTACA
ACCCACCTCCAGAAAATGAGCAAGCACCAGAAATTATCCCCCGGAGAAGT
GGGAGAACTAGAAGACAGCCAACATGGCTCACATATAAGCATGCTGATGA
AAATGAGGATACTGCTTCCGGTGCAGTAATGATGTCTGCAGACGAAACAG
AATCAAATAATGTACAGGAGGCCATGTCAGGGGTTCAGAAACAATATTGG
ACATCTGCAATGGAAAGAGAAATTAATTCTTTATACGAGAATTATACTGG
AATCTGGTCCCTCGAAAAGCTCCCCGACTTCCTTGACGGAGTCTGGTATT
ACCTGGACAGGACTAAATATATTCTGGACTTTGACGGTGATTTCGAAGTC
CTGGTCACATATGAAGAACTTTCTGCATCCGGAAAGTCTTTGGAACCTCT
TCTCAACATGATTTAA
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protein sequence of Gvermi12509.t1

>Gvermi12509.t1 ID=Gvermi12509.t1|Name=Gvermi12509.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=172bp
MEEEISFEPENSKEEEVMLNTSKENDLANSEAYNPPPENEQAPEIIPRRS
GRTRRQPTWLTYKHADENEDTASGAVMMSADETESNNVQEAMSGVQKQYW
TSAMEREINSLYENYTGIWSLEKLPDFLDGVWYYLDRTKYILDFDGDFEV
LVTYEELSASGKSLEPLLNMI*
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mRNA from alignment at ScGOVlb_3404:5889756..5892794-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12509.t1 ID=Gvermi12509.t1|Name=Gvermi12509.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=3039bp|location=Sequence derived from alignment at ScGOVlb_3404:5889756..5892794- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGAAGAAATTTCTTTTGAACCAGAAAACTCAAAAGAAGAAGAAGT
AATGTTGAACACTAGTAAGGAAAATGATTTGGCAAATTCTGAGGCTTACA
ACCCACCTCCAGAAAATGAGCAAGCACCAGAAATTATCCCCCGGAGAAGT
GGGAGAACTAGAAGACAGCCAACATGGCTCACATATAAGCATGCTGATGA
AAATGAGGATACTGCTTCCGGTGCAGTAATGATGTCTGCAGACGAAACAG
AATCAAATAATGTACAGGAGGCCATGTCAGGGGTTCAGAAACAATATTGG
ACATCTGCAATGGAAAGAGAAATTAATTCTTTATACGAGAATTATACTGG
AATCTGGTCCCTCGAAAGTCAGACATGCATATTTTGCAACCAAAATGGGT
TTTCAAGATAAAAACCGAAATCAAGAATCAAGAGAAATTATTTAAGGCAA
GACTGGTGTTCAAAGGGTATCAGCAAAAATATGGAATTGATTATTTTGAC
ATGTACGCTCCCGTTGTACGCATGGCTTCTTTAAGGACTATGCTGGCTGT
AGCACTCCAACGAAAAATTTTCATCACCCAGATTGATGTTAAAACAGAGT
TATTAAATGGAGTGTTGGAGGAAGAAATTTTTATGGAACAGCCTGAGAGT
TTTCTTGACTCCCAAAAATCCTAATCACGTCTGCAAGCTAACGAAGGCAA
TATATGGACTAAAACAGGCGCCAAGAGTGTGGTGTAAAATTATTAGCTCG
GTTTTGAGCAACATGAAATTTTCGAAAGCTTATGGAAACAGTGGAATATT
TGTCGCAAATATTGATGACCATGAAGTATTTATTTCACTATATATCGATG
ATATAGTACTGGCAAGTGAAAGTCCAAAGGTGTTAAGTTTTGTGAAGCAT
GAACTAAGGTCTAAATTCCAAATGAAAGATCTTGGAGAAACTCGGCATGT
ACTAGGCATTGAAATCGACTAAAATCGAGAAAAAGGAATTCTGAAATTAT
GTTAAAGTGCCTACGCAAGAACTGTGCTTAGACGATTTAATATGAAGAAC
TGCAAGGAAATTAATACACCCTTGGAGGCGAACAGTACTTTACAAAAATG
TGGAACTGATGAAATAATTACGGGCGTTCGCTACAGAGAATGAATCGGTT
CACTTTTGTATCTTTCGCTATGGACGCGTCTTGATCTAGCAAGTGCAGTT
GGAAAATTAAGTCCGCTTTCTGAAGAGCATTGCACAGAGCATTCGAAATC
ATGCAAAAGGGTTCTTAGGTATGTGCAGAAGACAAAAGATTTTTGTCTCG
TCTACAAAACATTTACCAACCCGTCACTAGATGTCTACAGAGATGCCAGT
TGGGATAATACGGAAAATAGAAAATCAGGTTCTGGATATGCTGCATTTTA
TGGAAATTGTTTACTGAAGTGGATCAGTCGAAAGCAAAATTGTGTGGCAT
TGTCATCCACAGAGGCCGAATTATTTGCAGTTACAGAGGCAGTCAAAGAA
GGGAAATGGTTGGCAAAAATCATGAAGGATCTTAAAACTTCTGTAAAACA
AGCTATTCAATTTTTTTGTTGACAACCAGTCTACAATTGCAATTTCAAAA
ATGGAAGAATGCCATAAAAAATCGAAGCATATTGCTATACGGTATTTCTA
TATTCAGGACTGCTTGAAAAATGAAGAAGTGAAAATTACATACTGTCCTA
CCGAACATATGGCAGCTGATATTTTTACAAAGTCTCTAGAGAAGAACAAG
AATTGGTTTTTTATGGACATGTTGGGTCTTAAGCAGTTATCAAGTTGGGA
GAGGGTTTTGTAGAAGCATCCAGAAGCTTCTAGGAAGCAACTAGAAACTG
CTAATATCTAGGGACTTCTAGAAGGTTCTATAGAAGAAATTATGTAGAAG
TATTTTATGCTTTATGATAGAAACTATTAGAAGTTCTAGAAGGCTATAGA
ACATTATGAGAACACTATATAAGAAAGAATTGCAGACCAGGTTTGATGAA
TGATAGAAGTCAAACCGAGTCATCGAGATAAAACAACAGTGCGTTTACTC
AAGTTTATCCTCAGCTCTGTACTACACCTATTTACACTAATTGTTTTCTC
CGTTTCATTGAGAAGACAGATGCTGAGACTACTGCTGAAGTACTTTTTGA
GTACTTCACTTTATTCGTTCCAGTACTGTCATGGTTCTTTGATCAAGGCA
CTAGCTTTGAGAACCAGTTTATTGAGATTCTAGCTAGGACCTTGGGTGCT
ATGTCCAATTTTTCGATTCCTTACGTTCCGTGGTCAAATGGATACGTGGA
AGCAGTGTGGAAGTAAAATCTTCAAATTATGCGTGCATTAAGCACTTAAT
TCATGATCCCCTAATCTGAGTGGCGATCAGATATTCCAGCGATACAGAGT
AAAATCAATAGTACTCCTGCACGCCGGCTAGGTTATAGAGGGCCTGATAA
GGTGCAAACTGGTATAGAACCAAGAAACTCTTTGCAACTGAGTCTTATAG
CTTTGAAATATATTTATGCCACGTCAAGCGACGATGCTCGAGTTCTACAT
GATCTGGAGATCGTCGAGCTACAACATTCGCTCTTGGAAATGCATAGATT
GGTATAAGTATAGTGGTTTAAGTAAAGGAAGAAAGCAATACAACGTCACA
ACAAAGAGACAGGTGTATTCAATTTCAACCTCATCATTGCTGACAATGAT
GTTGTTGCGCAGACCTAAGGCCGAAGGACTAAAATTTCTGCCAAATGAGT
TGGGCCAAGGCGCCTTATAGCGGTGCTAGCTGACTATATTTATTTTTCGA
GCACCCACAAATTCAAGACAGAAGATATATACATCTCTACAATCAAGCTT
TATGCTTATGTCTTCGTGGGCACTTCTTCGCATATGTAAGAGCTCCCCGA
CTTCCTTGACGGAGTCTGGTATTACCTGGACAGGACTAAATATATTCTGG
ACTTTGACGGTGATTTCGAAGTCCTGGTCACATATGAAGAACTTTCTGCA
TCCGGAAAGTCTTTGGAACCTCTTCTCAACATGATTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:5889756..5892794-

>Gvermi12509.t1 ID=Gvermi12509.t1|Name=Gvermi12509.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=516bp|location=Sequence derived from alignment at ScGOVlb_3404:5889756..5892794- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGAAGAAATTTCTTTTGAACCAGAAAACTCAAAAGAAGAAGAAGT
AATGTTGAACACTAGTAAGGAAAATGATTTGGCAAATTCTGAGGCTTACA
ACCCACCTCCAGAAAATGAGCAAGCACCAGAAATTATCCCCCGGAGAAGT
GGGAGAACTAGAAGACAGCCAACATGGCTCACATATAAGCATGCTGATGA
AAATGAGGATACTGCTTCCGGTGCAGTAATGATGTCTGCAGACGAAACAG
AATCAAATAATGTACAGGAGGCCATGTCAGGGGTTCAGAAACAATATTGG
ACATCTGCAATGGAAAGAGAAATTAATTCTTTATACGAGAATTATACTGG
AATCTGGTCCCTCGAAAAGCTCCCCGACTTCCTTGACGGAGTCTGGTATT
ACCTGGACAGGACTAAATATATTCTGGACTTTGACGGTGATTTCGAAGTC
CTGGTCACATATGAAGAACTTTCTGCATCCGGAAAGTCTTTGGAACCTCT
TCTCAACATGATTTAA
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