Gvermi12507.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12507.t1
Unique NameGvermi12507.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length466
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5764738..5766135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1463820.JOGW01000024_gene4857
PFAMsPI-PLC-X
Max annot lvl201174|Actinobacteria
KEGG rclassRC00017,RC00425
KEGG koko:K01771
KEGG ReactionR03332
KEGG Pathwayko00562,map00562
Evalue2.25e-48
EggNOG OGsCOG0823@1|root,COG0823@2|Bacteria,2GMN7@201174|Actinobacteria
EC4.6.1.13
DescriptionPhosphatidylinositol-specific phospholipase C, X domain
COG categoryU
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12507Gvermi12507Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 5764738..5766135 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12507.t1.start1Gvermi12507.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 5764738..5764740 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12507.t1.CDS1Gvermi12507.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5764738..5766135 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12507.t1.exon1Gvermi12507.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5764738..5766135 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12507.t1.stop1Gvermi12507.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 5766133..5766135 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12507.t1Gvermi12507.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 5764738..5766135 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12507.t1 ID=Gvermi12507.t1|Name=Gvermi12507.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=466bp
MQQYDAIPKITSESVPGEKTGLVLGFTSTRYSRIHRALLSALVLGFLGCV
VHLAFRPHYGSLKLPGVSDPVSVVDDSRLTIIDEDSKTEGTMSTSSSPAS
WLTSTAGDWMTDLPNGKSIAHVSIPGTHDSGARYGGAGCETQTWTIADQL
NAGLRFFDIRCRVAGTVFAIHHGPCFQNMFFGDVLIDIRDFLAAHPSEFV
IMNIQEEHKPMSGSSSFMSIWNDYRNRFDYLFVDSKSSIPTVGQIRGKIL
VMSKLALGRGISWDDHFTETQNIFKVYALLNDYPFGSDTASIGQKKRLVR
EYIDKAASSSKLVLNFLSGAEGMIPKDVARSTNQNAYEHIGAYNGAKRVG
VILMDFPGEKIVYRVIKTNYESTEYCDSKIWRTVSGKTWAEFRMPVAVVG
TSISIKGGGYAKYKFPKCHRATWTDLRFVCSSSTKCWEKVSGSWDADAWC
HNSNTNQNYLAVGVL*
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spliced messenger RNA

>Gvermi12507.t1 ID=Gvermi12507.t1|Name=Gvermi12507.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1398bp|location=Sequence derived from alignment at ScGOVlb_3404:5764738..5766135+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCAATACGATGCAATTCCGAAGATAACCTCAGAATCTGTTCCTGG
GGAGAAAACTGGTCTGGTCCTTGGATTCACTTCGACTCGCTATTCACGAA
TCCATCGAGCTCTACTTTCAGCTTTGGTGCTAGGGTTCCTTGGATGTGTT
GTACATTTAGCATTCCGTCCCCATTATGGCTCGCTAAAGCTCCCTGGTGT
GTCAGATCCTGTTAGTGTAGTAGATGATTCTCGCTTGACGATTATTGACG
AGGACTCGAAGACCGAAGGTACTATGTCAACTTCTTCATCTCCCGCTTCA
TGGCTTACGAGCACTGCAGGCGATTGGATGACCGACCTTCCGAATGGCAA
ATCTATTGCGCACGTCTCTATTCCTGGTACGCACGACTCGGGTGCACGCT
ATGGTGGTGCAGGGTGTGAGACCCAAACTTGGACGATTGCAGATCAGTTA
AATGCTGGCCTACGCTTCTTCGACATAAGATGCCGGGTCGCTGGGACAGT
GTTTGCAATACACCATGGGCCCTGTTTTCAAAATATGTTCTTTGGGGATG
TTTTGATCGATATAAGGGACTTCCTTGCCGCCCACCCTAGTGAATTTGTG
ATCATGAACATCCAAGAAGAACACAAGCCAATGAGCGGATCATCTTCATT
TATGTCAATCTGGAACGACTACAGGAATAGGTTTGATTATCTTTTTGTCG
ACTCAAAATCTTCCATACCCACTGTGGGGCAAATCCGAGGCAAGATTTTG
GTCATGAGCAAACTCGCTCTCGGCAGAGGTATTTCATGGGATGACCATTT
TACGGAAACTCAGAACATATTCAAAGTTTACGCCTTATTGAACGATTATC
CCTTTGGTTCGGATACTGCGTCTATCGGTCAGAAAAAGAGATTAGTAAGG
GAGTACATAGACAAAGCTGCGTCTTCTTCGAAGCTTGTACTCAACTTTCT
GTCCGGAGCAGAAGGTATGATACCAAAAGATGTCGCACGTAGCACCAACC
AAAATGCTTACGAACACATAGGTGCATACAACGGCGCTAAGCGCGTGGGT
GTAATTCTCATGGACTTTCCCGGAGAAAAGATTGTGTACCGCGTTATTAA
GACCAACTATGAGAGTACAGAGTACTGTGACTCGAAAATCTGGCGCACAG
TTAGTGGAAAGACATGGGCAGAATTTCGAATGCCCGTTGCAGTCGTGGGA
ACATCTATTAGCATTAAAGGAGGAGGCTACGCCAAGTACAAGTTCCCAAA
ATGCCATCGCGCTACTTGGACCGATCTGCGCTTCGTTTGCAGTTCTTCTA
CCAAGTGTTGGGAAAAAGTCTCTGGATCCTGGGATGCAGATGCATGGTGC
CACAACAGCAACACTAATCAGAATTATCTTGCCGTCGGGGTCTTGTAA
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protein sequence of Gvermi12507.t1

>Gvermi12507.t1 ID=Gvermi12507.t1|Name=Gvermi12507.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=466bp
MQQYDAIPKITSESVPGEKTGLVLGFTSTRYSRIHRALLSALVLGFLGCV
VHLAFRPHYGSLKLPGVSDPVSVVDDSRLTIIDEDSKTEGTMSTSSSPAS
WLTSTAGDWMTDLPNGKSIAHVSIPGTHDSGARYGGAGCETQTWTIADQL
NAGLRFFDIRCRVAGTVFAIHHGPCFQNMFFGDVLIDIRDFLAAHPSEFV
IMNIQEEHKPMSGSSSFMSIWNDYRNRFDYLFVDSKSSIPTVGQIRGKIL
VMSKLALGRGISWDDHFTETQNIFKVYALLNDYPFGSDTASIGQKKRLVR
EYIDKAASSSKLVLNFLSGAEGMIPKDVARSTNQNAYEHIGAYNGAKRVG
VILMDFPGEKIVYRVIKTNYESTEYCDSKIWRTVSGKTWAEFRMPVAVVG
TSISIKGGGYAKYKFPKCHRATWTDLRFVCSSSTKCWEKVSGSWDADAWC
HNSNTNQNYLAVGVL*
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mRNA from alignment at ScGOVlb_3404:5764738..5766135+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12507.t1 ID=Gvermi12507.t1|Name=Gvermi12507.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1398bp|location=Sequence derived from alignment at ScGOVlb_3404:5764738..5766135+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCAATACGATGCAATTCCGAAGATAACCTCAGAATCTGTTCCTGG
GGAGAAAACTGGTCTGGTCCTTGGATTCACTTCGACTCGCTATTCACGAA
TCCATCGAGCTCTACTTTCAGCTTTGGTGCTAGGGTTCCTTGGATGTGTT
GTACATTTAGCATTCCGTCCCCATTATGGCTCGCTAAAGCTCCCTGGTGT
GTCAGATCCTGTTAGTGTAGTAGATGATTCTCGCTTGACGATTATTGACG
AGGACTCGAAGACCGAAGGTACTATGTCAACTTCTTCATCTCCCGCTTCA
TGGCTTACGAGCACTGCAGGCGATTGGATGACCGACCTTCCGAATGGCAA
ATCTATTGCGCACGTCTCTATTCCTGGTACGCACGACTCGGGTGCACGCT
ATGGTGGTGCAGGGTGTGAGACCCAAACTTGGACGATTGCAGATCAGTTA
AATGCTGGCCTACGCTTCTTCGACATAAGATGCCGGGTCGCTGGGACAGT
GTTTGCAATACACCATGGGCCCTGTTTTCAAAATATGTTCTTTGGGGATG
TTTTGATCGATATAAGGGACTTCCTTGCCGCCCACCCTAGTGAATTTGTG
ATCATGAACATCCAAGAAGAACACAAGCCAATGAGCGGATCATCTTCATT
TATGTCAATCTGGAACGACTACAGGAATAGGTTTGATTATCTTTTTGTCG
ACTCAAAATCTTCCATACCCACTGTGGGGCAAATCCGAGGCAAGATTTTG
GTCATGAGCAAACTCGCTCTCGGCAGAGGTATTTCATGGGATGACCATTT
TACGGAAACTCAGAACATATTCAAAGTTTACGCCTTATTGAACGATTATC
CCTTTGGTTCGGATACTGCGTCTATCGGTCAGAAAAAGAGATTAGTAAGG
GAGTACATAGACAAAGCTGCGTCTTCTTCGAAGCTTGTACTCAACTTTCT
GTCCGGAGCAGAAGGTATGATACCAAAAGATGTCGCACGTAGCACCAACC
AAAATGCTTACGAACACATAGGTGCATACAACGGCGCTAAGCGCGTGGGT
GTAATTCTCATGGACTTTCCCGGAGAAAAGATTGTGTACCGCGTTATTAA
GACCAACTATGAGAGTACAGAGTACTGTGACTCGAAAATCTGGCGCACAG
TTAGTGGAAAGACATGGGCAGAATTTCGAATGCCCGTTGCAGTCGTGGGA
ACATCTATTAGCATTAAAGGAGGAGGCTACGCCAAGTACAAGTTCCCAAA
ATGCCATCGCGCTACTTGGACCGATCTGCGCTTCGTTTGCAGTTCTTCTA
CCAAGTGTTGGGAAAAAGTCTCTGGATCCTGGGATGCAGATGCATGGTGC
CACAACAGCAACACTAATCAGAATTATCTTGCCGTCGGGGTCTTGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:5764738..5766135+

>Gvermi12507.t1 ID=Gvermi12507.t1|Name=Gvermi12507.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1398bp|location=Sequence derived from alignment at ScGOVlb_3404:5764738..5766135+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCAATACGATGCAATTCCGAAGATAACCTCAGAATCTGTTCCTGG
GGAGAAAACTGGTCTGGTCCTTGGATTCACTTCGACTCGCTATTCACGAA
TCCATCGAGCTCTACTTTCAGCTTTGGTGCTAGGGTTCCTTGGATGTGTT
GTACATTTAGCATTCCGTCCCCATTATGGCTCGCTAAAGCTCCCTGGTGT
GTCAGATCCTGTTAGTGTAGTAGATGATTCTCGCTTGACGATTATTGACG
AGGACTCGAAGACCGAAGGTACTATGTCAACTTCTTCATCTCCCGCTTCA
TGGCTTACGAGCACTGCAGGCGATTGGATGACCGACCTTCCGAATGGCAA
ATCTATTGCGCACGTCTCTATTCCTGGTACGCACGACTCGGGTGCACGCT
ATGGTGGTGCAGGGTGTGAGACCCAAACTTGGACGATTGCAGATCAGTTA
AATGCTGGCCTACGCTTCTTCGACATAAGATGCCGGGTCGCTGGGACAGT
GTTTGCAATACACCATGGGCCCTGTTTTCAAAATATGTTCTTTGGGGATG
TTTTGATCGATATAAGGGACTTCCTTGCCGCCCACCCTAGTGAATTTGTG
ATCATGAACATCCAAGAAGAACACAAGCCAATGAGCGGATCATCTTCATT
TATGTCAATCTGGAACGACTACAGGAATAGGTTTGATTATCTTTTTGTCG
ACTCAAAATCTTCCATACCCACTGTGGGGCAAATCCGAGGCAAGATTTTG
GTCATGAGCAAACTCGCTCTCGGCAGAGGTATTTCATGGGATGACCATTT
TACGGAAACTCAGAACATATTCAAAGTTTACGCCTTATTGAACGATTATC
CCTTTGGTTCGGATACTGCGTCTATCGGTCAGAAAAAGAGATTAGTAAGG
GAGTACATAGACAAAGCTGCGTCTTCTTCGAAGCTTGTACTCAACTTTCT
GTCCGGAGCAGAAGGTATGATACCAAAAGATGTCGCACGTAGCACCAACC
AAAATGCTTACGAACACATAGGTGCATACAACGGCGCTAAGCGCGTGGGT
GTAATTCTCATGGACTTTCCCGGAGAAAAGATTGTGTACCGCGTTATTAA
GACCAACTATGAGAGTACAGAGTACTGTGACTCGAAAATCTGGCGCACAG
TTAGTGGAAAGACATGGGCAGAATTTCGAATGCCCGTTGCAGTCGTGGGA
ACATCTATTAGCATTAAAGGAGGAGGCTACGCCAAGTACAAGTTCCCAAA
ATGCCATCGCGCTACTTGGACCGATCTGCGCTTCGTTTGCAGTTCTTCTA
CCAAGTGTTGGGAAAAAGTCTCTGGATCCTGGGATGCAGATGCATGGTGC
CACAACAGCAACACTAATCAGAATTATCTTGCCGTCGGGGTCTTGTAA
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