Gvermi12504.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12504.t1
Unique NameGvermi12504.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length318
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5674234..5675187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6087.XP_002161356.1
PFAMsCUB,Ldl_recept_a,Trypsin
Max annot lvl2759|Eukaryota
KEGG koko:K01362
Evalue5.12e-12
EggNOG OGsCOG5640@1|root,KOG3627@2759|Eukaryota
Descriptionserine-type endopeptidase activity
COG categoryO
BRITEko00000,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12504Gvermi12504Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 5674234..5675187 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12504.t1.start1Gvermi12504.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 5674234..5674236 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12504.t1.CDS1Gvermi12504.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5674234..5675187 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12504.t1.exon1Gvermi12504.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5674234..5675187 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12504.t1.stop1Gvermi12504.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 5675185..5675187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12504.t1Gvermi12504.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 5674234..5675187 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12504.t1 ID=Gvermi12504.t1|Name=Gvermi12504.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=318bp
MRASSLTTTLEVVVLLFCLAHASFARFERHPYKQRHGKASRLRERPEPRR
AREKRIVGGGAVPETVLRRLARVVVKDDGDELASCTGSVAARTYIICAAH
CFVDGDAQVDVQNSYVLVGERSSRLRYFESARNKYFIRAVYVHRKYRDDR
TFSYDVALIQLVDGIERDLYSPVSLGNPPSNDATKVQAAGYGVKGSRKRQ
PKRVMQTTVLYQSWSRCKDRRGLLIGNSRTREFCYTSLDFPKKGRTNTCF
GDSGGPILHKKKGKYVQVGITSYFVGDLCESAGTVSVAQNIGAFKKMMRR
KIRRGHNRGWRKLPSRL*
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spliced messenger RNA

>Gvermi12504.t1 ID=Gvermi12504.t1|Name=Gvermi12504.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=954bp|location=Sequence derived from alignment at ScGOVlb_3404:5674234..5675187+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCGTCCTCCCTCACCACAACTCTTGAGGTTGTCGTCTTGCTGTT
CTGCCTCGCGCACGCATCGTTCGCACGCTTCGAACGCCACCCGTACAAGC
AGCGCCACGGAAAAGCATCGCGGCTCCGCGAGCGTCCCGAGCCGCGGCGC
GCGCGCGAAAAGCGCATCGTGGGCGGCGGCGCCGTGCCGGAAACCGTGCT
CAGACGCCTGGCGAGAGTGGTGGTCAAGGACGACGGCGACGAGCTCGCCT
CGTGCACGGGGTCGGTCGCCGCGCGCACGTACATCATTTGCGCTGCGCAC
TGTTTCGTCGACGGTGACGCACAGGTTGACGTGCAAAACTCGTACGTTCT
TGTTGGCGAGAGAAGCAGCAGACTTCGGTACTTTGAATCGGCGCGAAACA
AGTACTTCATACGCGCTGTGTACGTGCACAGAAAGTACAGAGACGATCGC
ACGTTTTCCTACGACGTTGCGCTGATTCAGCTCGTGGATGGGATTGAACG
CGATCTGTACAGCCCGGTGTCGTTGGGAAATCCGCCATCAAACGATGCAA
CAAAGGTTCAGGCAGCCGGCTACGGCGTGAAGGGCTCTAGAAAGAGGCAA
CCCAAACGAGTAATGCAGACCACCGTGCTATATCAATCGTGGAGCAGATG
CAAAGATCGTAGAGGACTCCTCATTGGCAATAGCCGCACGCGAGAGTTTT
GCTACACCTCGTTGGACTTTCCGAAAAAGGGAAGAACCAATACATGCTTT
GGAGACTCGGGAGGCCCCATTCTGCACAAGAAGAAGGGAAAATACGTGCA
AGTTGGGATAACCAGTTATTTCGTGGGTGATCTTTGCGAATCGGCTGGCA
CAGTGAGCGTGGCGCAAAACATTGGAGCATTCAAAAAGATGATGCGAAGG
AAGATAAGGCGTGGTCACAACAGGGGCTGGAGGAAACTGCCAAGCCGATT
GTGA
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protein sequence of Gvermi12504.t1

>Gvermi12504.t1 ID=Gvermi12504.t1|Name=Gvermi12504.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=318bp
MRASSLTTTLEVVVLLFCLAHASFARFERHPYKQRHGKASRLRERPEPRR
AREKRIVGGGAVPETVLRRLARVVVKDDGDELASCTGSVAARTYIICAAH
CFVDGDAQVDVQNSYVLVGERSSRLRYFESARNKYFIRAVYVHRKYRDDR
TFSYDVALIQLVDGIERDLYSPVSLGNPPSNDATKVQAAGYGVKGSRKRQ
PKRVMQTTVLYQSWSRCKDRRGLLIGNSRTREFCYTSLDFPKKGRTNTCF
GDSGGPILHKKKGKYVQVGITSYFVGDLCESAGTVSVAQNIGAFKKMMRR
KIRRGHNRGWRKLPSRL*
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mRNA from alignment at ScGOVlb_3404:5674234..5675187+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12504.t1 ID=Gvermi12504.t1|Name=Gvermi12504.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=954bp|location=Sequence derived from alignment at ScGOVlb_3404:5674234..5675187+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGCGTCCTCCCTCACCACAACTCTTGAGGTTGTCGTCTTGCTGTT
CTGCCTCGCGCACGCATCGTTCGCACGCTTCGAACGCCACCCGTACAAGC
AGCGCCACGGAAAAGCATCGCGGCTCCGCGAGCGTCCCGAGCCGCGGCGC
GCGCGCGAAAAGCGCATCGTGGGCGGCGGCGCCGTGCCGGAAACCGTGCT
CAGACGCCTGGCGAGAGTGGTGGTCAAGGACGACGGCGACGAGCTCGCCT
CGTGCACGGGGTCGGTCGCCGCGCGCACGTACATCATTTGCGCTGCGCAC
TGTTTCGTCGACGGTGACGCACAGGTTGACGTGCAAAACTCGTACGTTCT
TGTTGGCGAGAGAAGCAGCAGACTTCGGTACTTTGAATCGGCGCGAAACA
AGTACTTCATACGCGCTGTGTACGTGCACAGAAAGTACAGAGACGATCGC
ACGTTTTCCTACGACGTTGCGCTGATTCAGCTCGTGGATGGGATTGAACG
CGATCTGTACAGCCCGGTGTCGTTGGGAAATCCGCCATCAAACGATGCAA
CAAAGGTTCAGGCAGCCGGCTACGGCGTGAAGGGCTCTAGAAAGAGGCAA
CCCAAACGAGTAATGCAGACCACCGTGCTATATCAATCGTGGAGCAGATG
CAAAGATCGTAGAGGACTCCTCATTGGCAATAGCCGCACGCGAGAGTTTT
GCTACACCTCGTTGGACTTTCCGAAAAAGGGAAGAACCAATACATGCTTT
GGAGACTCGGGAGGCCCCATTCTGCACAAGAAGAAGGGAAAATACGTGCA
AGTTGGGATAACCAGTTATTTCGTGGGTGATCTTTGCGAATCGGCTGGCA
CAGTGAGCGTGGCGCAAAACATTGGAGCATTCAAAAAGATGATGCGAAGG
AAGATAAGGCGTGGTCACAACAGGGGCTGGAGGAAACTGCCAAGCCGATT
GTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:5674234..5675187+

>Gvermi12504.t1 ID=Gvermi12504.t1|Name=Gvermi12504.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=954bp|location=Sequence derived from alignment at ScGOVlb_3404:5674234..5675187+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCGCGTCCTCCCTCACCACAACTCTTGAGGTTGTCGTCTTGCTGTT
CTGCCTCGCGCACGCATCGTTCGCACGCTTCGAACGCCACCCGTACAAGC
AGCGCCACGGAAAAGCATCGCGGCTCCGCGAGCGTCCCGAGCCGCGGCGC
GCGCGCGAAAAGCGCATCGTGGGCGGCGGCGCCGTGCCGGAAACCGTGCT
CAGACGCCTGGCGAGAGTGGTGGTCAAGGACGACGGCGACGAGCTCGCCT
CGTGCACGGGGTCGGTCGCCGCGCGCACGTACATCATTTGCGCTGCGCAC
TGTTTCGTCGACGGTGACGCACAGGTTGACGTGCAAAACTCGTACGTTCT
TGTTGGCGAGAGAAGCAGCAGACTTCGGTACTTTGAATCGGCGCGAAACA
AGTACTTCATACGCGCTGTGTACGTGCACAGAAAGTACAGAGACGATCGC
ACGTTTTCCTACGACGTTGCGCTGATTCAGCTCGTGGATGGGATTGAACG
CGATCTGTACAGCCCGGTGTCGTTGGGAAATCCGCCATCAAACGATGCAA
CAAAGGTTCAGGCAGCCGGCTACGGCGTGAAGGGCTCTAGAAAGAGGCAA
CCCAAACGAGTAATGCAGACCACCGTGCTATATCAATCGTGGAGCAGATG
CAAAGATCGTAGAGGACTCCTCATTGGCAATAGCCGCACGCGAGAGTTTT
GCTACACCTCGTTGGACTTTCCGAAAAAGGGAAGAACCAATACATGCTTT
GGAGACTCGGGAGGCCCCATTCTGCACAAGAAGAAGGGAAAATACGTGCA
AGTTGGGATAACCAGTTATTTCGTGGGTGATCTTTGCGAATCGGCTGGCA
CAGTGAGCGTGGCGCAAAACATTGGAGCATTCAAAAAGATGATGCGAAGG
AAGATAAGGCGTGGTCACAACAGGGGCTGGAGGAAACTGCCAAGCCGATT
GTGA
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