Gvermi12502.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12502.t1
Unique NameGvermi12502.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length591
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5669222..5670994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12502Gvermi12502Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 5669222..5670994 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12502.t1.stop1Gvermi12502.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 5669222..5669224 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12502.t1.CDS1Gvermi12502.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5669222..5670994 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12502.t1.exon1Gvermi12502.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5669222..5670994 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12502.t1.start1Gvermi12502.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 5670992..5670994 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12502.t1Gvermi12502.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 5669222..5670994 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12502.t1 ID=Gvermi12502.t1|Name=Gvermi12502.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=591bp
MDSDKNETLAKARALERAVRRHGDIDAMTDLGTMMVFEDVFASQRMRGVQ
FLNRAIKQGRHPHAMYFLAKFFTDQQVNGAASLAAPLLERALRLDERPEI
LHRLGLLYLYGKGVRKDAAHAAGLFERALRLEQDPYLMESLAIALLQAPS
MHQHRRRALKLYRKAIDMTADPLVMNRLGLQYSEGTCVLKANASKARKWF
MRSLNRCDDAAPRFNLALLMLDGDADEDDVTQAIRLLEDSLEKEQHELTM
LELADLYVKRSVDVERGVNLYEAAALRFDSGAARFKFVHNLLGCRAATPD
NRVRVHDFCLKDVQKNRNLGSLVLMAQVLWSVSERKEALRILDIHQWTRH
GVFSLMLRYDLSLHPGGRKRARALMETFDSRIEDVCFSDAVILSERECAA
DRLRALERFERDRKRRDVNVYSFVLPFARRCRFDLPFHGGLECVSNAMRV
FTCIADLACLNLASLLLETEGRQHECVGVLEGLMDGNLRLLGQLNCAYVL
MNGVAGVQRDWESGMQMLRDAVSETNDVSARAMLGNALAQQKGASDEDVE
RGWRLWKGVQEEADGEELRRLGRLVCRSSEQKWAQLRDAH*
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spliced messenger RNA

>Gvermi12502.t1 ID=Gvermi12502.t1|Name=Gvermi12502.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1773bp|location=Sequence derived from alignment at ScGOVlb_3404:5669222..5670994- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCTGACAAGAATGAGACATTGGCCAAGGCGCGCGCGCTCGAGAG
GGCTGTGCGACGGCATGGCGATATCGACGCCATGACCGACTTGGGTACCA
TGATGGTGTTCGAGGACGTGTTTGCCTCGCAGCGCATGCGGGGCGTTCAG
TTTTTGAATCGCGCAATCAAGCAAGGACGCCACCCTCACGCAATGTACTT
CCTCGCCAAGTTCTTCACCGACCAACAAGTGAACGGCGCCGCCTCGCTCG
CCGCGCCGCTGCTTGAGCGCGCCTTGCGACTAGATGAGCGCCCCGAGATA
TTGCACAGACTGGGCTTGCTGTACCTTTACGGCAAGGGCGTGCGCAAGGA
CGCGGCGCATGCCGCGGGGCTGTTCGAGAGGGCGCTGAGACTTGAGCAAG
ACCCGTACCTCATGGAAAGCCTGGCCATTGCGCTGCTCCAAGCGCCGTCC
ATGCACCAGCACAGGCGGCGCGCGTTGAAGCTGTACAGGAAAGCAATAGA
CATGACGGCAGACCCGCTGGTCATGAATCGGCTGGGGCTGCAATACAGCG
AGGGGACGTGCGTCTTGAAGGCGAACGCGTCAAAGGCTCGAAAGTGGTTT
ATGCGCTCGCTCAACCGGTGCGACGACGCGGCGCCGCGCTTCAATTTAGC
GCTGCTCATGCTGGACGGCGACGCAGACGAGGACGATGTGACTCAGGCCA
TTCGCCTGCTGGAAGATTCTCTGGAAAAGGAGCAGCACGAGTTGACCATG
TTGGAGCTGGCCGATCTGTACGTGAAGCGCAGCGTGGATGTGGAGCGCGG
GGTGAATCTGTACGAAGCGGCGGCTCTGCGCTTCGACTCGGGGGCGGCGC
GGTTCAAGTTCGTGCACAACCTGCTCGGCTGCCGCGCGGCGACGCCCGAC
AATCGCGTGCGGGTGCACGACTTCTGCCTCAAGGACGTGCAAAAGAACAG
GAACCTGGGCTCGTTGGTGCTCATGGCGCAGGTGCTTTGGAGCGTGTCCG
AGCGCAAAGAGGCGCTGCGCATACTGGACATACACCAGTGGACCAGGCAT
GGGGTTTTTTCGTTGATGCTGCGATACGACTTGAGTCTGCACCCCGGGGG
CAGAAAGCGGGCGCGCGCGCTGATGGAGACGTTCGACAGCAGAATAGAAG
ACGTGTGCTTCAGCGACGCGGTGATTCTGAGCGAGAGAGAGTGCGCGGCG
GACAGGCTGAGGGCGCTGGAGCGGTTTGAGCGCGATAGAAAGAGACGGGA
TGTGAATGTGTACAGCTTTGTGCTACCGTTCGCGCGGCGCTGCCGGTTTG
ACCTGCCGTTCCACGGCGGGCTGGAGTGCGTGAGCAACGCGATGAGGGTG
TTCACTTGCATAGCGGACCTGGCGTGCCTGAACCTGGCCAGCCTGCTGCT
GGAGACGGAGGGGAGGCAGCACGAGTGCGTGGGCGTGCTGGAGGGCTTGA
TGGACGGCAACTTGCGGCTGCTGGGGCAGTTGAATTGTGCGTACGTGCTG
ATGAACGGGGTGGCGGGGGTGCAGCGGGACTGGGAGTCGGGGATGCAGAT
GCTGCGCGACGCGGTGAGCGAAACAAACGACGTGTCTGCGCGGGCCATGT
TGGGCAACGCGCTGGCGCAGCAAAAGGGGGCGAGCGACGAGGACGTGGAG
CGCGGGTGGCGGCTGTGGAAGGGGGTGCAGGAAGAAGCAGACGGGGAAGA
GTTGCGTAGACTTGGTCGACTGGTGTGCCGCAGCAGTGAGCAGAAGTGGG
CGCAGTTGAGAGACGCGCATTGA
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protein sequence of Gvermi12502.t1

>Gvermi12502.t1 ID=Gvermi12502.t1|Name=Gvermi12502.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=591bp
MDSDKNETLAKARALERAVRRHGDIDAMTDLGTMMVFEDVFASQRMRGVQ
FLNRAIKQGRHPHAMYFLAKFFTDQQVNGAASLAAPLLERALRLDERPEI
LHRLGLLYLYGKGVRKDAAHAAGLFERALRLEQDPYLMESLAIALLQAPS
MHQHRRRALKLYRKAIDMTADPLVMNRLGLQYSEGTCVLKANASKARKWF
MRSLNRCDDAAPRFNLALLMLDGDADEDDVTQAIRLLEDSLEKEQHELTM
LELADLYVKRSVDVERGVNLYEAAALRFDSGAARFKFVHNLLGCRAATPD
NRVRVHDFCLKDVQKNRNLGSLVLMAQVLWSVSERKEALRILDIHQWTRH
GVFSLMLRYDLSLHPGGRKRARALMETFDSRIEDVCFSDAVILSERECAA
DRLRALERFERDRKRRDVNVYSFVLPFARRCRFDLPFHGGLECVSNAMRV
FTCIADLACLNLASLLLETEGRQHECVGVLEGLMDGNLRLLGQLNCAYVL
MNGVAGVQRDWESGMQMLRDAVSETNDVSARAMLGNALAQQKGASDEDVE
RGWRLWKGVQEEADGEELRRLGRLVCRSSEQKWAQLRDAH*
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mRNA from alignment at ScGOVlb_3404:5669222..5670994-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12502.t1 ID=Gvermi12502.t1|Name=Gvermi12502.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1773bp|location=Sequence derived from alignment at ScGOVlb_3404:5669222..5670994- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTCTGACAAGAATGAGACATTGGCCAAGGCGCGCGCGCTCGAGAG
GGCTGTGCGACGGCATGGCGATATCGACGCCATGACCGACTTGGGTACCA
TGATGGTGTTCGAGGACGTGTTTGCCTCGCAGCGCATGCGGGGCGTTCAG
TTTTTGAATCGCGCAATCAAGCAAGGACGCCACCCTCACGCAATGTACTT
CCTCGCCAAGTTCTTCACCGACCAACAAGTGAACGGCGCCGCCTCGCTCG
CCGCGCCGCTGCTTGAGCGCGCCTTGCGACTAGATGAGCGCCCCGAGATA
TTGCACAGACTGGGCTTGCTGTACCTTTACGGCAAGGGCGTGCGCAAGGA
CGCGGCGCATGCCGCGGGGCTGTTCGAGAGGGCGCTGAGACTTGAGCAAG
ACCCGTACCTCATGGAAAGCCTGGCCATTGCGCTGCTCCAAGCGCCGTCC
ATGCACCAGCACAGGCGGCGCGCGTTGAAGCTGTACAGGAAAGCAATAGA
CATGACGGCAGACCCGCTGGTCATGAATCGGCTGGGGCTGCAATACAGCG
AGGGGACGTGCGTCTTGAAGGCGAACGCGTCAAAGGCTCGAAAGTGGTTT
ATGCGCTCGCTCAACCGGTGCGACGACGCGGCGCCGCGCTTCAATTTAGC
GCTGCTCATGCTGGACGGCGACGCAGACGAGGACGATGTGACTCAGGCCA
TTCGCCTGCTGGAAGATTCTCTGGAAAAGGAGCAGCACGAGTTGACCATG
TTGGAGCTGGCCGATCTGTACGTGAAGCGCAGCGTGGATGTGGAGCGCGG
GGTGAATCTGTACGAAGCGGCGGCTCTGCGCTTCGACTCGGGGGCGGCGC
GGTTCAAGTTCGTGCACAACCTGCTCGGCTGCCGCGCGGCGACGCCCGAC
AATCGCGTGCGGGTGCACGACTTCTGCCTCAAGGACGTGCAAAAGAACAG
GAACCTGGGCTCGTTGGTGCTCATGGCGCAGGTGCTTTGGAGCGTGTCCG
AGCGCAAAGAGGCGCTGCGCATACTGGACATACACCAGTGGACCAGGCAT
GGGGTTTTTTCGTTGATGCTGCGATACGACTTGAGTCTGCACCCCGGGGG
CAGAAAGCGGGCGCGCGCGCTGATGGAGACGTTCGACAGCAGAATAGAAG
ACGTGTGCTTCAGCGACGCGGTGATTCTGAGCGAGAGAGAGTGCGCGGCG
GACAGGCTGAGGGCGCTGGAGCGGTTTGAGCGCGATAGAAAGAGACGGGA
TGTGAATGTGTACAGCTTTGTGCTACCGTTCGCGCGGCGCTGCCGGTTTG
ACCTGCCGTTCCACGGCGGGCTGGAGTGCGTGAGCAACGCGATGAGGGTG
TTCACTTGCATAGCGGACCTGGCGTGCCTGAACCTGGCCAGCCTGCTGCT
GGAGACGGAGGGGAGGCAGCACGAGTGCGTGGGCGTGCTGGAGGGCTTGA
TGGACGGCAACTTGCGGCTGCTGGGGCAGTTGAATTGTGCGTACGTGCTG
ATGAACGGGGTGGCGGGGGTGCAGCGGGACTGGGAGTCGGGGATGCAGAT
GCTGCGCGACGCGGTGAGCGAAACAAACGACGTGTCTGCGCGGGCCATGT
TGGGCAACGCGCTGGCGCAGCAAAAGGGGGCGAGCGACGAGGACGTGGAG
CGCGGGTGGCGGCTGTGGAAGGGGGTGCAGGAAGAAGCAGACGGGGAAGA
GTTGCGTAGACTTGGTCGACTGGTGTGCCGCAGCAGTGAGCAGAAGTGGG
CGCAGTTGAGAGACGCGCATTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:5669222..5670994-

>Gvermi12502.t1 ID=Gvermi12502.t1|Name=Gvermi12502.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1773bp|location=Sequence derived from alignment at ScGOVlb_3404:5669222..5670994- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTCTGACAAGAATGAGACATTGGCCAAGGCGCGCGCGCTCGAGAG
GGCTGTGCGACGGCATGGCGATATCGACGCCATGACCGACTTGGGTACCA
TGATGGTGTTCGAGGACGTGTTTGCCTCGCAGCGCATGCGGGGCGTTCAG
TTTTTGAATCGCGCAATCAAGCAAGGACGCCACCCTCACGCAATGTACTT
CCTCGCCAAGTTCTTCACCGACCAACAAGTGAACGGCGCCGCCTCGCTCG
CCGCGCCGCTGCTTGAGCGCGCCTTGCGACTAGATGAGCGCCCCGAGATA
TTGCACAGACTGGGCTTGCTGTACCTTTACGGCAAGGGCGTGCGCAAGGA
CGCGGCGCATGCCGCGGGGCTGTTCGAGAGGGCGCTGAGACTTGAGCAAG
ACCCGTACCTCATGGAAAGCCTGGCCATTGCGCTGCTCCAAGCGCCGTCC
ATGCACCAGCACAGGCGGCGCGCGTTGAAGCTGTACAGGAAAGCAATAGA
CATGACGGCAGACCCGCTGGTCATGAATCGGCTGGGGCTGCAATACAGCG
AGGGGACGTGCGTCTTGAAGGCGAACGCGTCAAAGGCTCGAAAGTGGTTT
ATGCGCTCGCTCAACCGGTGCGACGACGCGGCGCCGCGCTTCAATTTAGC
GCTGCTCATGCTGGACGGCGACGCAGACGAGGACGATGTGACTCAGGCCA
TTCGCCTGCTGGAAGATTCTCTGGAAAAGGAGCAGCACGAGTTGACCATG
TTGGAGCTGGCCGATCTGTACGTGAAGCGCAGCGTGGATGTGGAGCGCGG
GGTGAATCTGTACGAAGCGGCGGCTCTGCGCTTCGACTCGGGGGCGGCGC
GGTTCAAGTTCGTGCACAACCTGCTCGGCTGCCGCGCGGCGACGCCCGAC
AATCGCGTGCGGGTGCACGACTTCTGCCTCAAGGACGTGCAAAAGAACAG
GAACCTGGGCTCGTTGGTGCTCATGGCGCAGGTGCTTTGGAGCGTGTCCG
AGCGCAAAGAGGCGCTGCGCATACTGGACATACACCAGTGGACCAGGCAT
GGGGTTTTTTCGTTGATGCTGCGATACGACTTGAGTCTGCACCCCGGGGG
CAGAAAGCGGGCGCGCGCGCTGATGGAGACGTTCGACAGCAGAATAGAAG
ACGTGTGCTTCAGCGACGCGGTGATTCTGAGCGAGAGAGAGTGCGCGGCG
GACAGGCTGAGGGCGCTGGAGCGGTTTGAGCGCGATAGAAAGAGACGGGA
TGTGAATGTGTACAGCTTTGTGCTACCGTTCGCGCGGCGCTGCCGGTTTG
ACCTGCCGTTCCACGGCGGGCTGGAGTGCGTGAGCAACGCGATGAGGGTG
TTCACTTGCATAGCGGACCTGGCGTGCCTGAACCTGGCCAGCCTGCTGCT
GGAGACGGAGGGGAGGCAGCACGAGTGCGTGGGCGTGCTGGAGGGCTTGA
TGGACGGCAACTTGCGGCTGCTGGGGCAGTTGAATTGTGCGTACGTGCTG
ATGAACGGGGTGGCGGGGGTGCAGCGGGACTGGGAGTCGGGGATGCAGAT
GCTGCGCGACGCGGTGAGCGAAACAAACGACGTGTCTGCGCGGGCCATGT
TGGGCAACGCGCTGGCGCAGCAAAAGGGGGCGAGCGACGAGGACGTGGAG
CGCGGGTGGCGGCTGTGGAAGGGGGTGCAGGAAGAAGCAGACGGGGAAGA
GTTGCGTAGACTTGGTCGACTGGTGTGCCGCAGCAGTGAGCAGAAGTGGG
CGCAGTTGAGAGACGCGCATTGA
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