Gvermi12501.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12501.t1
Unique NameGvermi12501.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length398
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5665297..5666490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog502025.Hoch_6261
PFAMsInhibitor_I9,Peptidase_S8,Somatomedin_B
Max annot lvl2|Bacteria
KEGG koko:K14645
KEGG Pathwayko02024,map02024
Evalue2.04e-39
EggNOG OGsCOG1404@1|root,COG1404@2|Bacteria
DescriptionBelongs to the peptidase S8 family
COG categoryO
BRITEko00000,ko00001,ko01000,ko01002,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12501Gvermi12501Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 5665297..5666490 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12501.t1.stop1Gvermi12501.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 5665297..5665299 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12501.t1.CDS1Gvermi12501.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5665297..5666490 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12501.t1.exon1Gvermi12501.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5665297..5666490 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12501.t1.start1Gvermi12501.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 5666488..5666490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12501.t1Gvermi12501.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 5665297..5666490 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12501.t1 ID=Gvermi12501.t1|Name=Gvermi12501.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=398bp
MFSKRISFAFVLGLMLIISKVSCQAIQGAFIAEVQGRCTGPCRQAIRAAL
ELDPATSGCRATRASLIGDLSFVDVNCPPSSSPSEAVVDNALRVGSTNGN
VNINLVQQDFIVTTAASTTNLWGIDEADGGVARQSGNPVRDGLRTCSMSS
NNGAGVNVWVLDTGCNPTPGGFCEGYYGGSPICKDNQGHGTHVAGTVNSP
LYGVAPSAVRSCVKVLSDNGSGSYSNVIRGIEFAANNRGAFANGDVINMS
LGGPRFEPVNDAVSEARKLGVYFALAAGNSAANACNSSPASTPGGGIFTV
QAHDINLNAASFTNFATSDLRCTDLSAPGVSILSDGLSPGSTRRLSGTSM
ASPHVAGACAILLSDGQRPTRKLLTANSVAISIPGALNRRTLGLACI*
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spliced messenger RNA

>Gvermi12501.t1 ID=Gvermi12501.t1|Name=Gvermi12501.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at ScGOVlb_3404:5665297..5666490- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTCCAAAAGAATTTCGTTCGCATTCGTTTTGGGGCTCATGCTCAT
CATTAGCAAGGTCTCATGTCAGGCAATCCAGGGAGCGTTCATTGCCGAAG
TACAAGGAAGATGTACAGGTCCATGCCGCCAGGCCATCCGAGCCGCCCTT
GAATTGGACCCGGCCACTTCAGGATGCCGTGCCACAAGGGCTTCTTTGAT
TGGCGACCTCTCATTCGTTGATGTCAACTGCCCTCCTTCTTCCTCGCCGT
CGGAAGCAGTTGTTGATAACGCCCTGCGAGTCGGATCAACTAATGGAAAT
GTCAACATTAATCTGGTTCAACAGGACTTTATTGTCACCACAGCTGCGAG
CACTACCAATCTGTGGGGTATCGATGAAGCCGATGGCGGTGTGGCAAGGC
AGAGCGGTAATCCAGTGAGGGACGGATTACGGACATGCAGCATGTCAAGC
AATAATGGTGCAGGAGTGAATGTTTGGGTGCTGGACACCGGATGTAATCC
GACTCCGGGAGGGTTTTGCGAAGGGTATTACGGGGGATCACCTATTTGTA
AGGACAATCAAGGGCATGGTACTCATGTTGCGGGGACTGTCAATAGTCCG
CTGTACGGCGTCGCCCCATCCGCTGTTCGGAGTTGTGTCAAAGTTTTGAG
CGACAATGGGTCTGGATCGTATTCGAATGTCATAAGGGGAATAGAATTTG
CCGCGAACAACAGAGGAGCTTTCGCCAACGGTGATGTCATCAATATGTCG
TTGGGCGGGCCACGGTTTGAGCCCGTAAATGACGCCGTATCAGAGGCCAG
GAAACTCGGAGTTTATTTCGCACTTGCAGCCGGAAATAGTGCTGCGAATG
CGTGTAACTCTTCGCCAGCATCAACACCCGGTGGTGGTATTTTCACTGTT
CAAGCTCACGACATTAATCTGAACGCCGCCAGCTTCACAAATTTTGCAAC
CTCAGACTTGCGATGCACGGATTTGTCTGCCCCAGGAGTTTCAATTTTGT
CTGATGGATTGAGCCCTGGCTCGACCAGGAGGTTATCTGGAACATCTATG
GCCTCCCCTCACGTTGCCGGGGCATGTGCCATTTTGTTGTCCGACGGACA
GAGGCCGACGAGAAAACTATTGACAGCCAACAGTGTGGCCATCAGCATCC
CTGGTGCCCTCAATCGACGTACTCTTGGACTTGCTTGCATATAA
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protein sequence of Gvermi12501.t1

>Gvermi12501.t1 ID=Gvermi12501.t1|Name=Gvermi12501.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=398bp
MFSKRISFAFVLGLMLIISKVSCQAIQGAFIAEVQGRCTGPCRQAIRAAL
ELDPATSGCRATRASLIGDLSFVDVNCPPSSSPSEAVVDNALRVGSTNGN
VNINLVQQDFIVTTAASTTNLWGIDEADGGVARQSGNPVRDGLRTCSMSS
NNGAGVNVWVLDTGCNPTPGGFCEGYYGGSPICKDNQGHGTHVAGTVNSP
LYGVAPSAVRSCVKVLSDNGSGSYSNVIRGIEFAANNRGAFANGDVINMS
LGGPRFEPVNDAVSEARKLGVYFALAAGNSAANACNSSPASTPGGGIFTV
QAHDINLNAASFTNFATSDLRCTDLSAPGVSILSDGLSPGSTRRLSGTSM
ASPHVAGACAILLSDGQRPTRKLLTANSVAISIPGALNRRTLGLACI*
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mRNA from alignment at ScGOVlb_3404:5665297..5666490-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12501.t1 ID=Gvermi12501.t1|Name=Gvermi12501.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at ScGOVlb_3404:5665297..5666490- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTTCCAAAAGAATTTCGTTCGCATTCGTTTTGGGGCTCATGCTCAT
CATTAGCAAGGTCTCATGTCAGGCAATCCAGGGAGCGTTCATTGCCGAAG
TACAAGGAAGATGTACAGGTCCATGCCGCCAGGCCATCCGAGCCGCCCTT
GAATTGGACCCGGCCACTTCAGGATGCCGTGCCACAAGGGCTTCTTTGAT
TGGCGACCTCTCATTCGTTGATGTCAACTGCCCTCCTTCTTCCTCGCCGT
CGGAAGCAGTTGTTGATAACGCCCTGCGAGTCGGATCAACTAATGGAAAT
GTCAACATTAATCTGGTTCAACAGGACTTTATTGTCACCACAGCTGCGAG
CACTACCAATCTGTGGGGTATCGATGAAGCCGATGGCGGTGTGGCAAGGC
AGAGCGGTAATCCAGTGAGGGACGGATTACGGACATGCAGCATGTCAAGC
AATAATGGTGCAGGAGTGAATGTTTGGGTGCTGGACACCGGATGTAATCC
GACTCCGGGAGGGTTTTGCGAAGGGTATTACGGGGGATCACCTATTTGTA
AGGACAATCAAGGGCATGGTACTCATGTTGCGGGGACTGTCAATAGTCCG
CTGTACGGCGTCGCCCCATCCGCTGTTCGGAGTTGTGTCAAAGTTTTGAG
CGACAATGGGTCTGGATCGTATTCGAATGTCATAAGGGGAATAGAATTTG
CCGCGAACAACAGAGGAGCTTTCGCCAACGGTGATGTCATCAATATGTCG
TTGGGCGGGCCACGGTTTGAGCCCGTAAATGACGCCGTATCAGAGGCCAG
GAAACTCGGAGTTTATTTCGCACTTGCAGCCGGAAATAGTGCTGCGAATG
CGTGTAACTCTTCGCCAGCATCAACACCCGGTGGTGGTATTTTCACTGTT
CAAGCTCACGACATTAATCTGAACGCCGCCAGCTTCACAAATTTTGCAAC
CTCAGACTTGCGATGCACGGATTTGTCTGCCCCAGGAGTTTCAATTTTGT
CTGATGGATTGAGCCCTGGCTCGACCAGGAGGTTATCTGGAACATCTATG
GCCTCCCCTCACGTTGCCGGGGCATGTGCCATTTTGTTGTCCGACGGACA
GAGGCCGACGAGAAAACTATTGACAGCCAACAGTGTGGCCATCAGCATCC
CTGGTGCCCTCAATCGACGTACTCTTGGACTTGCTTGCATATAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:5665297..5666490-

>Gvermi12501.t1 ID=Gvermi12501.t1|Name=Gvermi12501.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1194bp|location=Sequence derived from alignment at ScGOVlb_3404:5665297..5666490- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTTCCAAAAGAATTTCGTTCGCATTCGTTTTGGGGCTCATGCTCAT
CATTAGCAAGGTCTCATGTCAGGCAATCCAGGGAGCGTTCATTGCCGAAG
TACAAGGAAGATGTACAGGTCCATGCCGCCAGGCCATCCGAGCCGCCCTT
GAATTGGACCCGGCCACTTCAGGATGCCGTGCCACAAGGGCTTCTTTGAT
TGGCGACCTCTCATTCGTTGATGTCAACTGCCCTCCTTCTTCCTCGCCGT
CGGAAGCAGTTGTTGATAACGCCCTGCGAGTCGGATCAACTAATGGAAAT
GTCAACATTAATCTGGTTCAACAGGACTTTATTGTCACCACAGCTGCGAG
CACTACCAATCTGTGGGGTATCGATGAAGCCGATGGCGGTGTGGCAAGGC
AGAGCGGTAATCCAGTGAGGGACGGATTACGGACATGCAGCATGTCAAGC
AATAATGGTGCAGGAGTGAATGTTTGGGTGCTGGACACCGGATGTAATCC
GACTCCGGGAGGGTTTTGCGAAGGGTATTACGGGGGATCACCTATTTGTA
AGGACAATCAAGGGCATGGTACTCATGTTGCGGGGACTGTCAATAGTCCG
CTGTACGGCGTCGCCCCATCCGCTGTTCGGAGTTGTGTCAAAGTTTTGAG
CGACAATGGGTCTGGATCGTATTCGAATGTCATAAGGGGAATAGAATTTG
CCGCGAACAACAGAGGAGCTTTCGCCAACGGTGATGTCATCAATATGTCG
TTGGGCGGGCCACGGTTTGAGCCCGTAAATGACGCCGTATCAGAGGCCAG
GAAACTCGGAGTTTATTTCGCACTTGCAGCCGGAAATAGTGCTGCGAATG
CGTGTAACTCTTCGCCAGCATCAACACCCGGTGGTGGTATTTTCACTGTT
CAAGCTCACGACATTAATCTGAACGCCGCCAGCTTCACAAATTTTGCAAC
CTCAGACTTGCGATGCACGGATTTGTCTGCCCCAGGAGTTTCAATTTTGT
CTGATGGATTGAGCCCTGGCTCGACCAGGAGGTTATCTGGAACATCTATG
GCCTCCCCTCACGTTGCCGGGGCATGTGCCATTTTGTTGTCCGACGGACA
GAGGCCGACGAGAAAACTATTGACAGCCAACAGTGTGGCCATCAGCATCC
CTGGTGCCCTCAATCGACGTACTCTTGGACTTGCTTGCATATAA
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