Gvermi12499.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12499.t1
Unique NameGvermi12499.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length376
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5619904..5621031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog391625.PPSIR1_14590
PFAMsLactamase_B
Max annot lvl2|Bacteria
Evalue1.88e-15
EggNOG OGsCOG0491@1|root,COG0491@2|Bacteria
DescriptionThiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
COG categoryGM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12499Gvermi12499Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 5619904..5621031 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12499.t1.stop1Gvermi12499.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 5619904..5619906 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12499.t1.CDS1Gvermi12499.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5619904..5621031 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12499.t1.exon1Gvermi12499.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5619904..5621031 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12499.t1.start1Gvermi12499.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 5621029..5621031 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12499.t1Gvermi12499.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 5619904..5621031 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12499.t1 ID=Gvermi12499.t1|Name=Gvermi12499.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=376bp
MAAALIILPMLLPLLVATPISDRPAQCIPAKECIASLNAGKTCALFPNPN
RPVPLDAQGFNLTQIRKGVFSYSDGIYFSLIVYENKKLAIIDFPDIFSSV
APDGTYRLISAVRNVVGDSIPKKIFMIYSHFHVDHIGRAADMNSFLSHSY
KAVPLQVVGTRDTFNFLQRNREDIPLPDLFVTPWKPLKIVFSRSLLLSLF
ILGGHTKEDIVAYISPSSDGPGIVNLVDIINPKEAPLPQFTIAMNFEKFI
SAQEDLLKLDFAVFTPGHGVIGSRQDVINNLDYSKFVLKAVRESAQELDP
SVRVSVLQKFFNPDAFEYFNNPWAFGSLLGPQADLCFQKVISRWGCVLTG
VDVVARDHCLLVALYDFSSTFAISH*
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spliced messenger RNA

>Gvermi12499.t1 ID=Gvermi12499.t1|Name=Gvermi12499.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1128bp|location=Sequence derived from alignment at ScGOVlb_3404:5619904..5621031- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCCGCTCTTATTATTCTGCCAATGCTCTTGCCCTTGTTAGTAGC
CACTCCCATCTCTGACCGCCCCGCACAGTGCATTCCTGCCAAGGAATGCA
TCGCCAGTTTGAATGCCGGTAAAACGTGTGCACTGTTCCCGAACCCTAAC
CGCCCCGTCCCCCTGGATGCACAGGGCTTCAATCTCACCCAGATCCGAAA
AGGAGTCTTTTCCTACTCTGACGGAATCTATTTTTCGCTCATCGTTTACG
AAAACAAAAAACTGGCCATCATTGACTTTCCGGACATTTTCAGCTCCGTC
GCACCGGACGGGACTTATCGTCTTATTTCGGCCGTCCGAAACGTCGTCGG
CGACTCCATCCCCAAAAAAATATTCATGATATACTCCCATTTCCATGTAG
ACCACATTGGGCGCGCAGCGGACATGAACAGCTTTCTGTCTCATTCGTAC
AAGGCCGTTCCGTTGCAAGTGGTGGGCACGCGGGACACCTTTAATTTTCT
GCAACGAAATCGTGAGGACATTCCGCTACCCGATTTGTTTGTTACTCCCT
GGAAACCACTCAAGATCGTATTCTCCCGCTCTTTGCTACTCAGCTTGTTT
ATTCTGGGCGGCCATACTAAAGAGGACATCGTCGCATATATCAGCCCCTC
CTCCGATGGTCCCGGCATTGTCAACCTGGTCGACATCATCAACCCAAAGG
AAGCTCCTCTGCCGCAGTTCACAATCGCTATGAACTTTGAAAAGTTTATA
TCGGCCCAAGAAGATTTGCTAAAGCTGGATTTCGCTGTATTTACTCCGGG
ACATGGGGTGATTGGCTCCAGACAGGATGTCATTAACAATCTCGATTACT
CTAAATTTGTGCTGAAAGCTGTTCGGGAGAGTGCGCAGGAGCTAGACCCC
TCCGTACGGGTTTCGGTGCTACAGAAGTTTTTCAATCCTGATGCGTTTGA
GTACTTTAACAATCCCTGGGCGTTTGGGAGTTTGCTCGGACCTCAGGCCG
ACTTGTGTTTTCAAAAGGTGATTTCGAGGTGGGGATGCGTACTTACTGGC
GTAGATGTCGTCGCTAGGGATCATTGCCTGTTGGTCGCGCTGTATGACTT
TTCATCAACGTTTGCTATTTCGCATTGA
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protein sequence of Gvermi12499.t1

>Gvermi12499.t1 ID=Gvermi12499.t1|Name=Gvermi12499.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=376bp
MAAALIILPMLLPLLVATPISDRPAQCIPAKECIASLNAGKTCALFPNPN
RPVPLDAQGFNLTQIRKGVFSYSDGIYFSLIVYENKKLAIIDFPDIFSSV
APDGTYRLISAVRNVVGDSIPKKIFMIYSHFHVDHIGRAADMNSFLSHSY
KAVPLQVVGTRDTFNFLQRNREDIPLPDLFVTPWKPLKIVFSRSLLLSLF
ILGGHTKEDIVAYISPSSDGPGIVNLVDIINPKEAPLPQFTIAMNFEKFI
SAQEDLLKLDFAVFTPGHGVIGSRQDVINNLDYSKFVLKAVRESAQELDP
SVRVSVLQKFFNPDAFEYFNNPWAFGSLLGPQADLCFQKVISRWGCVLTG
VDVVARDHCLLVALYDFSSTFAISH*
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mRNA from alignment at ScGOVlb_3404:5619904..5621031-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12499.t1 ID=Gvermi12499.t1|Name=Gvermi12499.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1128bp|location=Sequence derived from alignment at ScGOVlb_3404:5619904..5621031- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGCCGCTCTTATTATTCTGCCAATGCTCTTGCCCTTGTTAGTAGC
CACTCCCATCTCTGACCGCCCCGCACAGTGCATTCCTGCCAAGGAATGCA
TCGCCAGTTTGAATGCCGGTAAAACGTGTGCACTGTTCCCGAACCCTAAC
CGCCCCGTCCCCCTGGATGCACAGGGCTTCAATCTCACCCAGATCCGAAA
AGGAGTCTTTTCCTACTCTGACGGAATCTATTTTTCGCTCATCGTTTACG
AAAACAAAAAACTGGCCATCATTGACTTTCCGGACATTTTCAGCTCCGTC
GCACCGGACGGGACTTATCGTCTTATTTCGGCCGTCCGAAACGTCGTCGG
CGACTCCATCCCCAAAAAAATATTCATGATATACTCCCATTTCCATGTAG
ACCACATTGGGCGCGCAGCGGACATGAACAGCTTTCTGTCTCATTCGTAC
AAGGCCGTTCCGTTGCAAGTGGTGGGCACGCGGGACACCTTTAATTTTCT
GCAACGAAATCGTGAGGACATTCCGCTACCCGATTTGTTTGTTACTCCCT
GGAAACCACTCAAGATCGTATTCTCCCGCTCTTTGCTACTCAGCTTGTTT
ATTCTGGGCGGCCATACTAAAGAGGACATCGTCGCATATATCAGCCCCTC
CTCCGATGGTCCCGGCATTGTCAACCTGGTCGACATCATCAACCCAAAGG
AAGCTCCTCTGCCGCAGTTCACAATCGCTATGAACTTTGAAAAGTTTATA
TCGGCCCAAGAAGATTTGCTAAAGCTGGATTTCGCTGTATTTACTCCGGG
ACATGGGGTGATTGGCTCCAGACAGGATGTCATTAACAATCTCGATTACT
CTAAATTTGTGCTGAAAGCTGTTCGGGAGAGTGCGCAGGAGCTAGACCCC
TCCGTACGGGTTTCGGTGCTACAGAAGTTTTTCAATCCTGATGCGTTTGA
GTACTTTAACAATCCCTGGGCGTTTGGGAGTTTGCTCGGACCTCAGGCCG
ACTTGTGTTTTCAAAAGGTGATTTCGAGGTGGGGATGCGTACTTACTGGC
GTAGATGTCGTCGCTAGGGATCATTGCCTGTTGGTCGCGCTGTATGACTT
TTCATCAACGTTTGCTATTTCGCATTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:5619904..5621031-

>Gvermi12499.t1 ID=Gvermi12499.t1|Name=Gvermi12499.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1128bp|location=Sequence derived from alignment at ScGOVlb_3404:5619904..5621031- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGCCGCTCTTATTATTCTGCCAATGCTCTTGCCCTTGTTAGTAGC
CACTCCCATCTCTGACCGCCCCGCACAGTGCATTCCTGCCAAGGAATGCA
TCGCCAGTTTGAATGCCGGTAAAACGTGTGCACTGTTCCCGAACCCTAAC
CGCCCCGTCCCCCTGGATGCACAGGGCTTCAATCTCACCCAGATCCGAAA
AGGAGTCTTTTCCTACTCTGACGGAATCTATTTTTCGCTCATCGTTTACG
AAAACAAAAAACTGGCCATCATTGACTTTCCGGACATTTTCAGCTCCGTC
GCACCGGACGGGACTTATCGTCTTATTTCGGCCGTCCGAAACGTCGTCGG
CGACTCCATCCCCAAAAAAATATTCATGATATACTCCCATTTCCATGTAG
ACCACATTGGGCGCGCAGCGGACATGAACAGCTTTCTGTCTCATTCGTAC
AAGGCCGTTCCGTTGCAAGTGGTGGGCACGCGGGACACCTTTAATTTTCT
GCAACGAAATCGTGAGGACATTCCGCTACCCGATTTGTTTGTTACTCCCT
GGAAACCACTCAAGATCGTATTCTCCCGCTCTTTGCTACTCAGCTTGTTT
ATTCTGGGCGGCCATACTAAAGAGGACATCGTCGCATATATCAGCCCCTC
CTCCGATGGTCCCGGCATTGTCAACCTGGTCGACATCATCAACCCAAAGG
AAGCTCCTCTGCCGCAGTTCACAATCGCTATGAACTTTGAAAAGTTTATA
TCGGCCCAAGAAGATTTGCTAAAGCTGGATTTCGCTGTATTTACTCCGGG
ACATGGGGTGATTGGCTCCAGACAGGATGTCATTAACAATCTCGATTACT
CTAAATTTGTGCTGAAAGCTGTTCGGGAGAGTGCGCAGGAGCTAGACCCC
TCCGTACGGGTTTCGGTGCTACAGAAGTTTTTCAATCCTGATGCGTTTGA
GTACTTTAACAATCCCTGGGCGTTTGGGAGTTTGCTCGGACCTCAGGCCG
ACTTGTGTTTTCAAAAGGTGATTTCGAGGTGGGGATGCGTACTTACTGGC
GTAGATGTCGTCGCTAGGGATCATTGCCTGTTGGTCGCGCTGTATGACTT
TTCATCAACGTTTGCTATTTCGCATTGA
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