Gvermi12498.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12498.t1
Unique NameGvermi12498.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length281
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5512320..5513232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12498Gvermi12498Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 5512320..5513232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12498.t1Gvermi12498.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 5512320..5513232 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12498.t1.start1Gvermi12498.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 5512320..5512322 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12498.t1.CDS1Gvermi12498.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5512320..5512760 +
Gvermi12498.t1.CDS2Gvermi12498.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5512831..5513232 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12498.t1.exon1Gvermi12498.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5512320..5512760 +
Gvermi12498.t1.exon2Gvermi12498.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5512831..5513232 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12498.t1.intron1Gvermi12498.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 5512761..5512830 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12498.t1.stop1Gvermi12498.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 5513230..5513232 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12498.t1 ID=Gvermi12498.t1|Name=Gvermi12498.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=281bp
MLRLSHVLVVTSFLLLVSTRSAQPNGCGESESCVVVLDLDSGEPPSVQNQ
GRKASEFPPQPCASNLKCKNRELEDCQNVGFLNTNIGFIPVISAVDSGGA
FVVFGSDIVPFSFRFLDNDTPGLGFLFRPLTTAFTGTPDNQPFLVSLTLA
PKVRPPATLEPPPYTFGFDFALYNRPSLDAVPLETVLYRRGTFRNGGCDL
EDVFRPIPQELLSIEQSDNFQDARDNPVVVIPAFLTVYRLRVTFETDTEC
ASFLFSTTTPCCTVDNSKFKNPGCNRPTRV*
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spliced messenger RNA

>Gvermi12498.t1 ID=Gvermi12498.t1|Name=Gvermi12498.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=843bp|location=Sequence derived from alignment at ScGOVlb_3404:5512320..5513232+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTACGTCTTTCTCATGTGTTAGTTGTTACATCCTTTTTGCTTCTCGT
CTCTACGCGTTCTGCACAGCCAAACGGGTGCGGGGAAAGCGAATCGTGCG
TGGTCGTGCTGGATTTGGACTCTGGAGAGCCTCCAAGCGTTCAGAATCAG
GGCAGAAAGGCATCCGAATTCCCTCCACAACCCTGTGCATCCAACCTCAA
GTGCAAGAATCGCGAACTCGAAGACTGCCAAAATGTTGGCTTTCTCAACA
CCAACATCGGTTTCATTCCGGTCATAAGCGCAGTTGATTCAGGAGGTGCA
TTTGTAGTCTTTGGGTCTGATATAGTGCCGTTCAGCTTTCGGTTCCTCGA
CAACGATACCCCGGGTCTGGGCTTTCTGTTCCGCCCCCTCACCACAGCAT
TTACAGGGACACCGGACAACCAGCCTTTCCTTGTATCATTGACCCTTGCG
CCAAAAGTTCGCCCGCCAGCAACGCTCGAACCACCGCCTTACACCTTTGG
CTTCGATTTTGCCCTGTACAACCGACCTTCACTTGATGCAGTGCCTCTGG
AAACTGTTCTGTACCGGCGGGGAACGTTCAGGAATGGCGGTTGCGACTTG
GAGGACGTATTCCGACCCATTCCGCAAGAACTTCTATCAATTGAGCAGTC
CGATAATTTCCAGGATGCCAGAGACAACCCCGTGGTTGTCATTCCAGCGT
TCTTGACGGTATACAGGCTCCGAGTGACCTTTGAAACAGATACTGAGTGT
GCGAGTTTCTTGTTCAGCACTACAACTCCGTGTTGTACGGTGGACAACTC
CAAGTTCAAGAATCCTGGATGCAACCGTCCAACTCGTGTTTGA
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protein sequence of Gvermi12498.t1

>Gvermi12498.t1 ID=Gvermi12498.t1|Name=Gvermi12498.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=281bp
MLRLSHVLVVTSFLLLVSTRSAQPNGCGESESCVVVLDLDSGEPPSVQNQ
GRKASEFPPQPCASNLKCKNRELEDCQNVGFLNTNIGFIPVISAVDSGGA
FVVFGSDIVPFSFRFLDNDTPGLGFLFRPLTTAFTGTPDNQPFLVSLTLA
PKVRPPATLEPPPYTFGFDFALYNRPSLDAVPLETVLYRRGTFRNGGCDL
EDVFRPIPQELLSIEQSDNFQDARDNPVVVIPAFLTVYRLRVTFETDTEC
ASFLFSTTTPCCTVDNSKFKNPGCNRPTRV*
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mRNA from alignment at ScGOVlb_3404:5512320..5513232+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12498.t1 ID=Gvermi12498.t1|Name=Gvermi12498.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=913bp|location=Sequence derived from alignment at ScGOVlb_3404:5512320..5513232+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTACGTCTTTCTCATGTGTTAGTTGTTACATCCTTTTTGCTTCTCGT
CTCTACGCGTTCTGCACAGCCAAACGGGTGCGGGGAAAGCGAATCGTGCG
TGGTCGTGCTGGATTTGGACTCTGGAGAGCCTCCAAGCGTTCAGAATCAG
GGCAGAAAGGCATCCGAATTCCCTCCACAACCCTGTGCATCCAACCTCAA
GTGCAAGAATCGCGAACTCGAAGACTGCCAAAATGTTGGCTTTCTCAACA
CCAACATCGGTTTCATTCCGGTCATAAGCGCAGTTGATTCAGGAGGTGCA
TTTGTAGTCTTTGGGTCTGATATAGTGCCGTTCAGCTTTCGGTTCCTCGA
CAACGATACCCCGGGTCTGGGCTTTCTGTTCCGCCCCCTCACCACAGCAT
TTACAGGGACACCGGACAACCAGCCTTTCCTTGTATCATTGGTACGTGCG
CTTCTTTCTCCTCGGTGCGAAGAGTTGCATCAGAAGTCCACTGACTGCTT
GTCTTTGTCAGACCCTTGCGCCAAAAGTTCGCCCGCCAGCAACGCTCGAA
CCACCGCCTTACACCTTTGGCTTCGATTTTGCCCTGTACAACCGACCTTC
ACTTGATGCAGTGCCTCTGGAAACTGTTCTGTACCGGCGGGGAACGTTCA
GGAATGGCGGTTGCGACTTGGAGGACGTATTCCGACCCATTCCGCAAGAA
CTTCTATCAATTGAGCAGTCCGATAATTTCCAGGATGCCAGAGACAACCC
CGTGGTTGTCATTCCAGCGTTCTTGACGGTATACAGGCTCCGAGTGACCT
TTGAAACAGATACTGAGTGTGCGAGTTTCTTGTTCAGCACTACAACTCCG
TGTTGTACGGTGGACAACTCCAAGTTCAAGAATCCTGGATGCAACCGTCC
AACTCGTGTTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:5512320..5513232+

>Gvermi12498.t1 ID=Gvermi12498.t1|Name=Gvermi12498.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=843bp|location=Sequence derived from alignment at ScGOVlb_3404:5512320..5513232+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTACGTCTTTCTCATGTGTTAGTTGTTACATCCTTTTTGCTTCTCGT
CTCTACGCGTTCTGCACAGCCAAACGGGTGCGGGGAAAGCGAATCGTGCG
TGGTCGTGCTGGATTTGGACTCTGGAGAGCCTCCAAGCGTTCAGAATCAG
GGCAGAAAGGCATCCGAATTCCCTCCACAACCCTGTGCATCCAACCTCAA
GTGCAAGAATCGCGAACTCGAAGACTGCCAAAATGTTGGCTTTCTCAACA
CCAACATCGGTTTCATTCCGGTCATAAGCGCAGTTGATTCAGGAGGTGCA
TTTGTAGTCTTTGGGTCTGATATAGTGCCGTTCAGCTTTCGGTTCCTCGA
CAACGATACCCCGGGTCTGGGCTTTCTGTTCCGCCCCCTCACCACAGCAT
TTACAGGGACACCGGACAACCAGCCTTTCCTTGTATCATTGACCCTTGCG
CCAAAAGTTCGCCCGCCAGCAACGCTCGAACCACCGCCTTACACCTTTGG
CTTCGATTTTGCCCTGTACAACCGACCTTCACTTGATGCAGTGCCTCTGG
AAACTGTTCTGTACCGGCGGGGAACGTTCAGGAATGGCGGTTGCGACTTG
GAGGACGTATTCCGACCCATTCCGCAAGAACTTCTATCAATTGAGCAGTC
CGATAATTTCCAGGATGCCAGAGACAACCCCGTGGTTGTCATTCCAGCGT
TCTTGACGGTATACAGGCTCCGAGTGACCTTTGAAACAGATACTGAGTGT
GCGAGTTTCTTGTTCAGCACTACAACTCCGTGTTGTACGGTGGACAACTC
CAAGTTCAAGAATCCTGGATGCAACCGTCCAACTCGTGTTTGA
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