Gvermi12497.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12497.t1
Unique NameGvermi12497.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length611
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5473089..5474921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12497Gvermi12497Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 5473089..5474921 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12497.t1.stop1Gvermi12497.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 5473089..5473091 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12497.t1.CDS1Gvermi12497.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5473089..5474921 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12497.t1.exon1Gvermi12497.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5473089..5474921 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12497.t1.start1Gvermi12497.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 5474919..5474921 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12497.t1Gvermi12497.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 5473089..5474921 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12497.t1 ID=Gvermi12497.t1|Name=Gvermi12497.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=611bp
MPSAGMPSRVDTPNAKARAYELAIKRHNDPEAMVSLAELLFSEQPNLRDV
SRAIQLLQRAIKQHDDPTAMNNLALFYLHSNDAAQRRQVIPLLERSLRKE
EDTIILRNLSDAVNDVRCGTPRPKLAVQLCERSLRFGDDPKCMEALAFNL
LTVKGIKTDNARAINLFKKAIRISNDAEAMNRLGMCYWEGTHHLPACAKR
AARWFEKSIQAGNFPVAKRNLAYLLAGDELPPSKRDPERAVRLMEDAIQQ
VRSDTFICTLAKIYRDVEQVQNFPRAIQLWETSLIEFNSNTARVSLLDIF
LGFKSEPADHPRALQFCREDYARTKDIAAFRVMCCILWSGARNVKADAQR
AVALMRDRDAEKLPEEIAARRFECETDEDMKKLMEQLPGTAGFYGTKFVK
AIVLSESQSEESLQQAESIFREIVGDDESQVMFAWLPLSLRMSSIQLPFD
GDPKRMTYTMKRATHCYEANLLNLASVVLEKGCEGGDKKAEVVKLLEEVM
DTGLRVVAMVNLGYILWTGVGGIPMDRKRAMQLLESCVEEADDACARALL
ASALVDSEEYTEEAMQRSMELWKSVEEEFAQDEEEISRMRWMLSERARNA
WASRAVRCGD*
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spliced messenger RNA

>Gvermi12497.t1 ID=Gvermi12497.t1|Name=Gvermi12497.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1833bp|location=Sequence derived from alignment at ScGOVlb_3404:5473089..5474921- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCTGCGGGGATGCCGTCGCGCGTCGACACTCCAAACGCCAAGGC
CCGCGCCTACGAGCTCGCCATCAAGCGACACAACGACCCCGAGGCCATGG
TCAGTCTCGCCGAGCTTCTTTTCTCCGAACAGCCCAACCTTCGTGATGTT
TCACGCGCCATACAGTTGCTCCAGCGCGCCATCAAACAGCATGACGACCC
CACCGCCATGAACAACCTCGCTTTGTTCTACCTCCACAGCAACGACGCCG
CGCAACGCCGCCAGGTCATTCCGTTGCTCGAGCGTTCCTTGAGAAAGGAG
GAGGACACCATCATACTCCGCAACCTTTCGGACGCCGTTAACGACGTGCG
CTGTGGCACGCCGCGCCCGAAGCTCGCCGTACAACTCTGCGAGCGATCGC
TGAGATTCGGCGACGACCCCAAGTGCATGGAGGCCCTGGCGTTCAACTTG
CTCACCGTGAAGGGCATCAAGACGGACAACGCTCGTGCCATCAACCTCTT
CAAGAAGGCCATACGCATTTCTAACGACGCCGAGGCGATGAACCGCTTGG
GTATGTGCTACTGGGAGGGCACCCATCACCTCCCCGCTTGCGCCAAACGA
GCCGCAAGGTGGTTTGAAAAGTCCATCCAAGCCGGAAACTTCCCGGTGGC
CAAGCGCAACCTCGCATATCTGCTGGCCGGAGACGAACTTCCGCCATCAA
AACGCGACCCAGAGCGCGCCGTCCGCCTCATGGAAGACGCCATTCAGCAA
GTGAGGTCGGACACGTTCATCTGCACTCTGGCCAAGATATACCGCGACGT
CGAACAGGTGCAGAACTTTCCGCGCGCCATACAGCTGTGGGAAACGTCGC
TCATCGAGTTCAACTCGAATACGGCGCGCGTGTCCCTGCTGGACATTTTC
CTGGGCTTCAAGAGCGAGCCCGCCGACCACCCCAGAGCGCTGCAGTTTTG
TCGAGAGGATTATGCGCGCACAAAGGACATTGCGGCGTTCCGCGTCATGT
GCTGCATTCTGTGGAGCGGTGCCAGAAATGTGAAGGCGGATGCGCAGCGC
GCTGTGGCGCTGATGCGAGATCGGGATGCGGAAAAGCTGCCGGAGGAGAT
TGCAGCGCGGCGCTTCGAATGCGAAACTGACGAAGACATGAAAAAGCTCA
TGGAGCAGCTACCCGGGACAGCTGGCTTTTACGGCACCAAGTTCGTCAAG
GCGATTGTTTTGAGCGAGTCGCAGTCGGAGGAAAGCCTGCAACAAGCCGA
AAGCATCTTCCGCGAGATCGTGGGCGACGATGAGTCACAGGTTATGTTTG
CGTGGTTGCCTTTGTCACTGAGAATGAGCAGCATCCAATTGCCGTTCGAT
GGAGACCCGAAGCGGATGACGTACACGATGAAGCGGGCGACGCACTGCTA
CGAGGCAAACTTGCTAAACTTGGCCAGCGTTGTTCTGGAAAAAGGGTGCG
AAGGAGGTGACAAAAAGGCAGAGGTTGTGAAACTGCTGGAGGAAGTGATG
GACACCGGGTTGAGAGTAGTGGCGATGGTGAATCTGGGATACATTCTGTG
GACCGGAGTTGGGGGGATCCCGATGGATAGAAAACGTGCCATGCAGCTGC
TTGAGAGTTGCGTGGAGGAGGCGGACGATGCGTGCGCGAGAGCGCTGCTA
GCGAGCGCGTTGGTGGACTCGGAAGAGTACACGGAGGAAGCGATGCAGAG
AAGCATGGAGCTGTGGAAGTCGGTGGAGGAGGAGTTTGCGCAGGACGAGG
AGGAGATTTCAAGGATGCGGTGGATGCTGAGCGAGAGAGCAAGGAATGCG
TGGGCATCGCGGGCCGTGCGATGCGGCGATTAG
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protein sequence of Gvermi12497.t1

>Gvermi12497.t1 ID=Gvermi12497.t1|Name=Gvermi12497.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=611bp
MPSAGMPSRVDTPNAKARAYELAIKRHNDPEAMVSLAELLFSEQPNLRDV
SRAIQLLQRAIKQHDDPTAMNNLALFYLHSNDAAQRRQVIPLLERSLRKE
EDTIILRNLSDAVNDVRCGTPRPKLAVQLCERSLRFGDDPKCMEALAFNL
LTVKGIKTDNARAINLFKKAIRISNDAEAMNRLGMCYWEGTHHLPACAKR
AARWFEKSIQAGNFPVAKRNLAYLLAGDELPPSKRDPERAVRLMEDAIQQ
VRSDTFICTLAKIYRDVEQVQNFPRAIQLWETSLIEFNSNTARVSLLDIF
LGFKSEPADHPRALQFCREDYARTKDIAAFRVMCCILWSGARNVKADAQR
AVALMRDRDAEKLPEEIAARRFECETDEDMKKLMEQLPGTAGFYGTKFVK
AIVLSESQSEESLQQAESIFREIVGDDESQVMFAWLPLSLRMSSIQLPFD
GDPKRMTYTMKRATHCYEANLLNLASVVLEKGCEGGDKKAEVVKLLEEVM
DTGLRVVAMVNLGYILWTGVGGIPMDRKRAMQLLESCVEEADDACARALL
ASALVDSEEYTEEAMQRSMELWKSVEEEFAQDEEEISRMRWMLSERARNA
WASRAVRCGD*
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mRNA from alignment at ScGOVlb_3404:5473089..5474921-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12497.t1 ID=Gvermi12497.t1|Name=Gvermi12497.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1833bp|location=Sequence derived from alignment at ScGOVlb_3404:5473089..5474921- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTCTGCGGGGATGCCGTCGCGCGTCGACACTCCAAACGCCAAGGC
CCGCGCCTACGAGCTCGCCATCAAGCGACACAACGACCCCGAGGCCATGG
TCAGTCTCGCCGAGCTTCTTTTCTCCGAACAGCCCAACCTTCGTGATGTT
TCACGCGCCATACAGTTGCTCCAGCGCGCCATCAAACAGCATGACGACCC
CACCGCCATGAACAACCTCGCTTTGTTCTACCTCCACAGCAACGACGCCG
CGCAACGCCGCCAGGTCATTCCGTTGCTCGAGCGTTCCTTGAGAAAGGAG
GAGGACACCATCATACTCCGCAACCTTTCGGACGCCGTTAACGACGTGCG
CTGTGGCACGCCGCGCCCGAAGCTCGCCGTACAACTCTGCGAGCGATCGC
TGAGATTCGGCGACGACCCCAAGTGCATGGAGGCCCTGGCGTTCAACTTG
CTCACCGTGAAGGGCATCAAGACGGACAACGCTCGTGCCATCAACCTCTT
CAAGAAGGCCATACGCATTTCTAACGACGCCGAGGCGATGAACCGCTTGG
GTATGTGCTACTGGGAGGGCACCCATCACCTCCCCGCTTGCGCCAAACGA
GCCGCAAGGTGGTTTGAAAAGTCCATCCAAGCCGGAAACTTCCCGGTGGC
CAAGCGCAACCTCGCATATCTGCTGGCCGGAGACGAACTTCCGCCATCAA
AACGCGACCCAGAGCGCGCCGTCCGCCTCATGGAAGACGCCATTCAGCAA
GTGAGGTCGGACACGTTCATCTGCACTCTGGCCAAGATATACCGCGACGT
CGAACAGGTGCAGAACTTTCCGCGCGCCATACAGCTGTGGGAAACGTCGC
TCATCGAGTTCAACTCGAATACGGCGCGCGTGTCCCTGCTGGACATTTTC
CTGGGCTTCAAGAGCGAGCCCGCCGACCACCCCAGAGCGCTGCAGTTTTG
TCGAGAGGATTATGCGCGCACAAAGGACATTGCGGCGTTCCGCGTCATGT
GCTGCATTCTGTGGAGCGGTGCCAGAAATGTGAAGGCGGATGCGCAGCGC
GCTGTGGCGCTGATGCGAGATCGGGATGCGGAAAAGCTGCCGGAGGAGAT
TGCAGCGCGGCGCTTCGAATGCGAAACTGACGAAGACATGAAAAAGCTCA
TGGAGCAGCTACCCGGGACAGCTGGCTTTTACGGCACCAAGTTCGTCAAG
GCGATTGTTTTGAGCGAGTCGCAGTCGGAGGAAAGCCTGCAACAAGCCGA
AAGCATCTTCCGCGAGATCGTGGGCGACGATGAGTCACAGGTTATGTTTG
CGTGGTTGCCTTTGTCACTGAGAATGAGCAGCATCCAATTGCCGTTCGAT
GGAGACCCGAAGCGGATGACGTACACGATGAAGCGGGCGACGCACTGCTA
CGAGGCAAACTTGCTAAACTTGGCCAGCGTTGTTCTGGAAAAAGGGTGCG
AAGGAGGTGACAAAAAGGCAGAGGTTGTGAAACTGCTGGAGGAAGTGATG
GACACCGGGTTGAGAGTAGTGGCGATGGTGAATCTGGGATACATTCTGTG
GACCGGAGTTGGGGGGATCCCGATGGATAGAAAACGTGCCATGCAGCTGC
TTGAGAGTTGCGTGGAGGAGGCGGACGATGCGTGCGCGAGAGCGCTGCTA
GCGAGCGCGTTGGTGGACTCGGAAGAGTACACGGAGGAAGCGATGCAGAG
AAGCATGGAGCTGTGGAAGTCGGTGGAGGAGGAGTTTGCGCAGGACGAGG
AGGAGATTTCAAGGATGCGGTGGATGCTGAGCGAGAGAGCAAGGAATGCG
TGGGCATCGCGGGCCGTGCGATGCGGCGATTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:5473089..5474921-

>Gvermi12497.t1 ID=Gvermi12497.t1|Name=Gvermi12497.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1833bp|location=Sequence derived from alignment at ScGOVlb_3404:5473089..5474921- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTCTGCGGGGATGCCGTCGCGCGTCGACACTCCAAACGCCAAGGC
CCGCGCCTACGAGCTCGCCATCAAGCGACACAACGACCCCGAGGCCATGG
TCAGTCTCGCCGAGCTTCTTTTCTCCGAACAGCCCAACCTTCGTGATGTT
TCACGCGCCATACAGTTGCTCCAGCGCGCCATCAAACAGCATGACGACCC
CACCGCCATGAACAACCTCGCTTTGTTCTACCTCCACAGCAACGACGCCG
CGCAACGCCGCCAGGTCATTCCGTTGCTCGAGCGTTCCTTGAGAAAGGAG
GAGGACACCATCATACTCCGCAACCTTTCGGACGCCGTTAACGACGTGCG
CTGTGGCACGCCGCGCCCGAAGCTCGCCGTACAACTCTGCGAGCGATCGC
TGAGATTCGGCGACGACCCCAAGTGCATGGAGGCCCTGGCGTTCAACTTG
CTCACCGTGAAGGGCATCAAGACGGACAACGCTCGTGCCATCAACCTCTT
CAAGAAGGCCATACGCATTTCTAACGACGCCGAGGCGATGAACCGCTTGG
GTATGTGCTACTGGGAGGGCACCCATCACCTCCCCGCTTGCGCCAAACGA
GCCGCAAGGTGGTTTGAAAAGTCCATCCAAGCCGGAAACTTCCCGGTGGC
CAAGCGCAACCTCGCATATCTGCTGGCCGGAGACGAACTTCCGCCATCAA
AACGCGACCCAGAGCGCGCCGTCCGCCTCATGGAAGACGCCATTCAGCAA
GTGAGGTCGGACACGTTCATCTGCACTCTGGCCAAGATATACCGCGACGT
CGAACAGGTGCAGAACTTTCCGCGCGCCATACAGCTGTGGGAAACGTCGC
TCATCGAGTTCAACTCGAATACGGCGCGCGTGTCCCTGCTGGACATTTTC
CTGGGCTTCAAGAGCGAGCCCGCCGACCACCCCAGAGCGCTGCAGTTTTG
TCGAGAGGATTATGCGCGCACAAAGGACATTGCGGCGTTCCGCGTCATGT
GCTGCATTCTGTGGAGCGGTGCCAGAAATGTGAAGGCGGATGCGCAGCGC
GCTGTGGCGCTGATGCGAGATCGGGATGCGGAAAAGCTGCCGGAGGAGAT
TGCAGCGCGGCGCTTCGAATGCGAAACTGACGAAGACATGAAAAAGCTCA
TGGAGCAGCTACCCGGGACAGCTGGCTTTTACGGCACCAAGTTCGTCAAG
GCGATTGTTTTGAGCGAGTCGCAGTCGGAGGAAAGCCTGCAACAAGCCGA
AAGCATCTTCCGCGAGATCGTGGGCGACGATGAGTCACAGGTTATGTTTG
CGTGGTTGCCTTTGTCACTGAGAATGAGCAGCATCCAATTGCCGTTCGAT
GGAGACCCGAAGCGGATGACGTACACGATGAAGCGGGCGACGCACTGCTA
CGAGGCAAACTTGCTAAACTTGGCCAGCGTTGTTCTGGAAAAAGGGTGCG
AAGGAGGTGACAAAAAGGCAGAGGTTGTGAAACTGCTGGAGGAAGTGATG
GACACCGGGTTGAGAGTAGTGGCGATGGTGAATCTGGGATACATTCTGTG
GACCGGAGTTGGGGGGATCCCGATGGATAGAAAACGTGCCATGCAGCTGC
TTGAGAGTTGCGTGGAGGAGGCGGACGATGCGTGCGCGAGAGCGCTGCTA
GCGAGCGCGTTGGTGGACTCGGAAGAGTACACGGAGGAAGCGATGCAGAG
AAGCATGGAGCTGTGGAAGTCGGTGGAGGAGGAGTTTGCGCAGGACGAGG
AGGAGATTTCAAGGATGCGGTGGATGCTGAGCGAGAGAGCAAGGAATGCG
TGGGCATCGCGGGCCGTGCGATGCGGCGATTAG
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