Gvermi12491.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12491.t1
Unique NameGvermi12491.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length547
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5416971..5418611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12491Gvermi12491Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 5416971..5418611 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12491.t1.stop1Gvermi12491.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 5416971..5416973 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12491.t1.CDS1Gvermi12491.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5416971..5418611 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12491.t1.exon1Gvermi12491.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5416971..5418611 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12491.t1.start1Gvermi12491.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 5418609..5418611 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12491.t1Gvermi12491.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 5416971..5418611 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12491.t1 ID=Gvermi12491.t1|Name=Gvermi12491.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=547bp
MTHRNLPDDLVYEILEHWNPIQSSIQTQNFASIEEVCAKGTLVFSPDVFH
RVFMRFIENRVHSLDFVANNVIRPEERYSREIYADKHRMELFEDHAQVAA
YLCRAAAGTHKRNLKTLKIPVVAHSEGSCAILEEVVACSELQKLYVYQNS
VEEELMMKSVLKQLPNLRSIFLSTASKISIDALMNSPSNLEELSIGRLDP
YSVQRFTDYLDRKGHHIKHLGILGYGSARLSGEQETKDDSFVCFAAENSI
MLHMYNHGKTIMPNLKSFKATVLSDLDAGNFGALCEKFSGYADLILRKES
TKTVLIMPRNAVHNGPVFTEVDFSINSNMLLMTFPSSLSGLKILHFGLET
CMTNYIFDPFRRDSVHTLLDLGRRSLETIDCRRSPTITESAGVVFGFLSR
ILERCGPIINLECSSSLVKHFNENEMTEEINQTFLEVASQMHRIRRIHLF
RQESAISSEQCKVSMEEDVKFLAGIPYFFQCLIENAPSVERISFSWAPST
VCECCREHLKVYLKDALLAVQSFSESSEADVSDIYSELSIWWNNCH*
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spliced messenger RNA

>Gvermi12491.t1 ID=Gvermi12491.t1|Name=Gvermi12491.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1641bp|location=Sequence derived from alignment at ScGOVlb_3404:5416971..5418611- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCACAGAAACCTTCCAGATGATCTCGTTTACGAAATATTAGAGCA
CTGGAATCCTATCCAAAGTTCTATCCAGACACAGAATTTTGCGTCCATAG
AAGAAGTGTGTGCCAAGGGGACCCTAGTTTTCTCTCCTGATGTATTTCAC
AGAGTCTTTATGCGATTCATTGAAAACAGAGTTCACAGCCTGGATTTTGT
GGCAAATAATGTAATTCGTCCCGAGGAAAGATATTCAAGAGAAATTTATG
CAGATAAACATCGAATGGAGCTTTTTGAAGATCATGCCCAAGTCGCTGCA
TATTTGTGTAGAGCAGCCGCAGGGACTCACAAAAGAAATCTAAAAACCTT
GAAAATACCGGTAGTTGCCCACTCCGAAGGCAGTTGCGCAATTCTTGAAG
AGGTTGTGGCATGCTCCGAGTTGCAAAAGCTCTATGTATATCAAAACTCA
GTCGAAGAGGAATTGATGATGAAGAGCGTTTTAAAGCAACTTCCTAATTT
AAGATCCATCTTTTTGTCAACCGCTAGCAAGATTTCGATAGATGCTCTGA
TGAACAGTCCTTCAAATTTGGAGGAGCTAAGTATAGGCAGACTGGATCCA
TATTCTGTACAACGTTTTACTGACTATCTCGACAGGAAAGGACATCATAT
CAAACATCTTGGAATACTTGGATACGGATCTGCACGGCTGTCTGGAGAGC
AAGAAACTAAAGATGATAGTTTTGTTTGCTTTGCAGCAGAAAACTCCATA
ATGTTGCATATGTATAACCATGGAAAAACAATTATGCCCAATTTGAAAAG
CTTCAAGGCCACAGTGCTTTCAGACCTAGATGCTGGAAATTTCGGTGCTC
TATGTGAAAAATTTTCAGGATATGCTGATCTTATTCTAAGAAAAGAATCT
ACAAAGACCGTGTTGATTATGCCAAGAAATGCTGTACACAATGGACCAGT
ATTCACAGAAGTTGATTTCAGCATAAATTCAAACATGCTACTAATGACCT
TCCCATCTTCACTGAGTGGCCTGAAGATTTTGCATTTTGGACTTGAAACT
TGCATGACCAATTATATTTTCGATCCATTCAGGAGGGATTCTGTGCACAC
ATTGCTAGACTTGGGAAGAAGGTCGTTGGAAACCATCGATTGCAGACGAA
GCCCAACCATTACCGAAAGCGCAGGCGTTGTATTCGGATTCTTATCGCGC
ATTTTGGAAAGATGTGGGCCGATTATCAATTTGGAATGCTCCTCATCTCT
TGTGAAACACTTTAACGAAAATGAAATGACGGAAGAAATCAACCAGACGT
TTTTGGAAGTAGCCTCTCAAATGCATAGAATCAGGAGAATACATCTATTT
AGACAAGAATCGGCAATATCTTCAGAACAATGCAAGGTTTCGATGGAGGA
AGATGTAAAATTCTTGGCAGGAATACCTTATTTTTTCCAGTGCTTGATCG
AAAACGCACCAAGTGTAGAGAGAATAAGTTTTTCATGGGCACCAAGCACT
GTTTGCGAGTGCTGTAGAGAACATTTGAAGGTTTACTTAAAGGATGCCCT
ACTGGCCGTTCAGTCATTTTCGGAATCAAGTGAGGCAGATGTCAGCGACA
TTTACTCGGAGCTCTCAATTTGGTGGAACAACTGTCATTAA
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protein sequence of Gvermi12491.t1

>Gvermi12491.t1 ID=Gvermi12491.t1|Name=Gvermi12491.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=547bp
MTHRNLPDDLVYEILEHWNPIQSSIQTQNFASIEEVCAKGTLVFSPDVFH
RVFMRFIENRVHSLDFVANNVIRPEERYSREIYADKHRMELFEDHAQVAA
YLCRAAAGTHKRNLKTLKIPVVAHSEGSCAILEEVVACSELQKLYVYQNS
VEEELMMKSVLKQLPNLRSIFLSTASKISIDALMNSPSNLEELSIGRLDP
YSVQRFTDYLDRKGHHIKHLGILGYGSARLSGEQETKDDSFVCFAAENSI
MLHMYNHGKTIMPNLKSFKATVLSDLDAGNFGALCEKFSGYADLILRKES
TKTVLIMPRNAVHNGPVFTEVDFSINSNMLLMTFPSSLSGLKILHFGLET
CMTNYIFDPFRRDSVHTLLDLGRRSLETIDCRRSPTITESAGVVFGFLSR
ILERCGPIINLECSSSLVKHFNENEMTEEINQTFLEVASQMHRIRRIHLF
RQESAISSEQCKVSMEEDVKFLAGIPYFFQCLIENAPSVERISFSWAPST
VCECCREHLKVYLKDALLAVQSFSESSEADVSDIYSELSIWWNNCH*
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mRNA from alignment at ScGOVlb_3404:5416971..5418611-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12491.t1 ID=Gvermi12491.t1|Name=Gvermi12491.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1641bp|location=Sequence derived from alignment at ScGOVlb_3404:5416971..5418611- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGCACAGAAACCTTCCAGATGATCTCGTTTACGAAATATTAGAGCA
CTGGAATCCTATCCAAAGTTCTATCCAGACACAGAATTTTGCGTCCATAG
AAGAAGTGTGTGCCAAGGGGACCCTAGTTTTCTCTCCTGATGTATTTCAC
AGAGTCTTTATGCGATTCATTGAAAACAGAGTTCACAGCCTGGATTTTGT
GGCAAATAATGTAATTCGTCCCGAGGAAAGATATTCAAGAGAAATTTATG
CAGATAAACATCGAATGGAGCTTTTTGAAGATCATGCCCAAGTCGCTGCA
TATTTGTGTAGAGCAGCCGCAGGGACTCACAAAAGAAATCTAAAAACCTT
GAAAATACCGGTAGTTGCCCACTCCGAAGGCAGTTGCGCAATTCTTGAAG
AGGTTGTGGCATGCTCCGAGTTGCAAAAGCTCTATGTATATCAAAACTCA
GTCGAAGAGGAATTGATGATGAAGAGCGTTTTAAAGCAACTTCCTAATTT
AAGATCCATCTTTTTGTCAACCGCTAGCAAGATTTCGATAGATGCTCTGA
TGAACAGTCCTTCAAATTTGGAGGAGCTAAGTATAGGCAGACTGGATCCA
TATTCTGTACAACGTTTTACTGACTATCTCGACAGGAAAGGACATCATAT
CAAACATCTTGGAATACTTGGATACGGATCTGCACGGCTGTCTGGAGAGC
AAGAAACTAAAGATGATAGTTTTGTTTGCTTTGCAGCAGAAAACTCCATA
ATGTTGCATATGTATAACCATGGAAAAACAATTATGCCCAATTTGAAAAG
CTTCAAGGCCACAGTGCTTTCAGACCTAGATGCTGGAAATTTCGGTGCTC
TATGTGAAAAATTTTCAGGATATGCTGATCTTATTCTAAGAAAAGAATCT
ACAAAGACCGTGTTGATTATGCCAAGAAATGCTGTACACAATGGACCAGT
ATTCACAGAAGTTGATTTCAGCATAAATTCAAACATGCTACTAATGACCT
TCCCATCTTCACTGAGTGGCCTGAAGATTTTGCATTTTGGACTTGAAACT
TGCATGACCAATTATATTTTCGATCCATTCAGGAGGGATTCTGTGCACAC
ATTGCTAGACTTGGGAAGAAGGTCGTTGGAAACCATCGATTGCAGACGAA
GCCCAACCATTACCGAAAGCGCAGGCGTTGTATTCGGATTCTTATCGCGC
ATTTTGGAAAGATGTGGGCCGATTATCAATTTGGAATGCTCCTCATCTCT
TGTGAAACACTTTAACGAAAATGAAATGACGGAAGAAATCAACCAGACGT
TTTTGGAAGTAGCCTCTCAAATGCATAGAATCAGGAGAATACATCTATTT
AGACAAGAATCGGCAATATCTTCAGAACAATGCAAGGTTTCGATGGAGGA
AGATGTAAAATTCTTGGCAGGAATACCTTATTTTTTCCAGTGCTTGATCG
AAAACGCACCAAGTGTAGAGAGAATAAGTTTTTCATGGGCACCAAGCACT
GTTTGCGAGTGCTGTAGAGAACATTTGAAGGTTTACTTAAAGGATGCCCT
ACTGGCCGTTCAGTCATTTTCGGAATCAAGTGAGGCAGATGTCAGCGACA
TTTACTCGGAGCTCTCAATTTGGTGGAACAACTGTCATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:5416971..5418611-

>Gvermi12491.t1 ID=Gvermi12491.t1|Name=Gvermi12491.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1641bp|location=Sequence derived from alignment at ScGOVlb_3404:5416971..5418611- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGCACAGAAACCTTCCAGATGATCTCGTTTACGAAATATTAGAGCA
CTGGAATCCTATCCAAAGTTCTATCCAGACACAGAATTTTGCGTCCATAG
AAGAAGTGTGTGCCAAGGGGACCCTAGTTTTCTCTCCTGATGTATTTCAC
AGAGTCTTTATGCGATTCATTGAAAACAGAGTTCACAGCCTGGATTTTGT
GGCAAATAATGTAATTCGTCCCGAGGAAAGATATTCAAGAGAAATTTATG
CAGATAAACATCGAATGGAGCTTTTTGAAGATCATGCCCAAGTCGCTGCA
TATTTGTGTAGAGCAGCCGCAGGGACTCACAAAAGAAATCTAAAAACCTT
GAAAATACCGGTAGTTGCCCACTCCGAAGGCAGTTGCGCAATTCTTGAAG
AGGTTGTGGCATGCTCCGAGTTGCAAAAGCTCTATGTATATCAAAACTCA
GTCGAAGAGGAATTGATGATGAAGAGCGTTTTAAAGCAACTTCCTAATTT
AAGATCCATCTTTTTGTCAACCGCTAGCAAGATTTCGATAGATGCTCTGA
TGAACAGTCCTTCAAATTTGGAGGAGCTAAGTATAGGCAGACTGGATCCA
TATTCTGTACAACGTTTTACTGACTATCTCGACAGGAAAGGACATCATAT
CAAACATCTTGGAATACTTGGATACGGATCTGCACGGCTGTCTGGAGAGC
AAGAAACTAAAGATGATAGTTTTGTTTGCTTTGCAGCAGAAAACTCCATA
ATGTTGCATATGTATAACCATGGAAAAACAATTATGCCCAATTTGAAAAG
CTTCAAGGCCACAGTGCTTTCAGACCTAGATGCTGGAAATTTCGGTGCTC
TATGTGAAAAATTTTCAGGATATGCTGATCTTATTCTAAGAAAAGAATCT
ACAAAGACCGTGTTGATTATGCCAAGAAATGCTGTACACAATGGACCAGT
ATTCACAGAAGTTGATTTCAGCATAAATTCAAACATGCTACTAATGACCT
TCCCATCTTCACTGAGTGGCCTGAAGATTTTGCATTTTGGACTTGAAACT
TGCATGACCAATTATATTTTCGATCCATTCAGGAGGGATTCTGTGCACAC
ATTGCTAGACTTGGGAAGAAGGTCGTTGGAAACCATCGATTGCAGACGAA
GCCCAACCATTACCGAAAGCGCAGGCGTTGTATTCGGATTCTTATCGCGC
ATTTTGGAAAGATGTGGGCCGATTATCAATTTGGAATGCTCCTCATCTCT
TGTGAAACACTTTAACGAAAATGAAATGACGGAAGAAATCAACCAGACGT
TTTTGGAAGTAGCCTCTCAAATGCATAGAATCAGGAGAATACATCTATTT
AGACAAGAATCGGCAATATCTTCAGAACAATGCAAGGTTTCGATGGAGGA
AGATGTAAAATTCTTGGCAGGAATACCTTATTTTTTCCAGTGCTTGATCG
AAAACGCACCAAGTGTAGAGAGAATAAGTTTTTCATGGGCACCAAGCACT
GTTTGCGAGTGCTGTAGAGAACATTTGAAGGTTTACTTAAAGGATGCCCT
ACTGGCCGTTCAGTCATTTTCGGAATCAAGTGAGGCAGATGTCAGCGACA
TTTACTCGGAGCTCTCAATTTGGTGGAACAACTGTCATTAA
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