Gvermi12490.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12490.t1
Unique NameGvermi12490.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length561
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5386706..5388388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog756272.Plabr_3820
PFAMsAn_peroxidase
Max annot lvl203682|Planctomycetes
Evalue1.38e-90
EggNOG OGsCOG2931@1|root,COG2931@2|Bacteria,2J53M@203682|Planctomycetes
DescriptionAnimal haem peroxidase
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12490Gvermi12490Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 5386706..5388388 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12490.t1.stop1Gvermi12490.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 5386706..5386708 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12490.t1.CDS1Gvermi12490.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5386706..5388388 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12490.t1.exon1Gvermi12490.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5386706..5388388 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12490.t1.start1Gvermi12490.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 5388386..5388388 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12490.t1Gvermi12490.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 5386706..5388388 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12490.t1 ID=Gvermi12490.t1|Name=Gvermi12490.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=561bp
MLVFICIMSVAGLLCSSVHGQAPFSNARGRGARALSPLPPPLSLATSGSD
PECVGLTFRPINGRCTSAANAALGEAGRAQFSYFNLNSIQPIGADLPSPR
LVSNVVVEQEGEDSNSGKLNELFTFFGQFIDHDSALTPVNSNEAFDIEIP
EDDPFLSAPLEFFRSQRAAVSQGSSVERPITAATSALDLSTVYGPDEERN
ELLRINGDCRLKTSAGNFLPLNSFGLENGPPGGGARFFAAGDSRSNETPM
LTIMHTIWVREHNFICDTLESDPSFGVTDPDELFEMARAVTIAEYQKIVY
NEWLPALLGSTLSTYSGYDSSVDPTVSVEFTTAAFRLGHTLVGNDVTRVD
STGTTLPPIPATEMFFLTAEDFVANGLEDFLRGSIVTKAQEFDEKIVDSL
RNLLFEEVPNEEGFDLMALNLQRARDHNIPSFNDIREFFLGSRVSSFSQI
STSSAANLEEAYGDVDKVEAWIGLMAEDKKPGSVVGPTLDAFLRTEFGRL
RDGDQFFYLISGRVPDIVLSTYPSLGSDIFSPKNLFNKILKRNSNIENRF
VPGNSNSFKA*
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spliced messenger RNA

>Gvermi12490.t1 ID=Gvermi12490.t1|Name=Gvermi12490.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1683bp|location=Sequence derived from alignment at ScGOVlb_3404:5386706..5388388- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGTCTTTATCTGCATCATGAGCGTTGCTGGACTTTTATGCTCCTC
AGTCCATGGTCAGGCACCATTTTCCAACGCCAGGGGAAGGGGAGCTAGAG
CTCTCTCTCCTCTGCCGCCACCTCTATCACTTGCTACTTCTGGTTCGGAT
CCGGAGTGCGTAGGATTAACGTTCCGCCCGATCAACGGAAGATGCACCTC
GGCGGCAAATGCTGCTCTCGGAGAAGCGGGGCGAGCCCAATTCAGCTATT
TCAATCTCAACTCGATTCAACCAATTGGCGCGGATCTGCCCAGCCCCCGC
CTGGTCTCAAACGTTGTAGTGGAGCAGGAAGGTGAAGACAGCAACTCTGG
AAAATTGAATGAGTTGTTCACCTTCTTCGGTCAGTTTATTGATCACGACT
CTGCGCTTACCCCCGTCAACAGTAATGAGGCATTTGATATTGAAATTCCA
GAAGATGATCCTTTTCTTTCGGCTCCTTTGGAATTTTTTCGTTCTCAACG
TGCTGCCGTCTCTCAGGGCTCGTCAGTGGAACGACCGATCACGGCAGCGA
CATCCGCTTTGGACCTGTCGACGGTTTACGGTCCTGACGAAGAACGCAAT
GAACTTCTTCGAATCAATGGTGACTGTCGCCTCAAGACATCTGCCGGTAA
TTTTCTTCCATTGAACAGCTTCGGTTTAGAAAACGGTCCTCCGGGAGGTG
GTGCTCGATTCTTTGCTGCTGGAGACTCAAGAAGCAATGAAACCCCTATG
CTTACAATCATGCACACAATATGGGTACGAGAGCACAATTTCATTTGTGA
TACTCTCGAATCAGACCCTTCTTTTGGTGTCACTGATCCTGATGAGCTAT
TTGAGATGGCAAGAGCAGTCACAATTGCCGAATACCAGAAGATTGTCTAC
AACGAATGGCTTCCCGCTTTATTGGGCTCCACACTGAGCACGTACTCTGG
ATATGACTCATCTGTGGATCCGACCGTGAGCGTTGAGTTCACCACGGCTG
CCTTCCGTCTTGGCCATACACTTGTTGGAAATGATGTGACCAGAGTGGAT
TCCACAGGAACAACTCTTCCGCCTATTCCTGCAACTGAGATGTTCTTCCT
CACCGCTGAGGATTTCGTTGCAAACGGTCTGGAAGACTTTCTTAGAGGCT
CAATTGTGACTAAGGCGCAAGAGTTTGATGAAAAAATCGTTGACAGCTTG
AGAAACCTCCTGTTCGAAGAGGTTCCAAATGAGGAAGGATTTGACTTAAT
GGCTCTCAACTTGCAGCGTGCTCGAGACCACAATATTCCGTCTTTCAATG
ACATTCGTGAATTTTTCCTGGGTAGCAGGGTTTCAAGCTTCTCTCAGATT
TCAACGTCTTCGGCTGCTAACCTTGAGGAAGCATACGGTGATGTAGACAA
GGTAGAAGCATGGATCGGGCTGATGGCTGAAGACAAAAAGCCCGGTTCCG
TGGTAGGTCCCACTCTTGATGCCTTTCTCAGAACCGAGTTCGGACGTCTC
CGCGACGGGGATCAGTTCTTCTATCTGATTTCTGGTCGTGTTCCTGATAT
TGTTCTTTCGACGTATCCGAGTCTTGGGTCTGACATATTCTCTCCGAAAA
ACTTGTTCAACAAAATTTTGAAGAGAAACTCCAATATTGAAAATAGATTT
GTTCCCGGAAATTCAAATTCTTTCAAGGCTTAA
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protein sequence of Gvermi12490.t1

>Gvermi12490.t1 ID=Gvermi12490.t1|Name=Gvermi12490.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=561bp
MLVFICIMSVAGLLCSSVHGQAPFSNARGRGARALSPLPPPLSLATSGSD
PECVGLTFRPINGRCTSAANAALGEAGRAQFSYFNLNSIQPIGADLPSPR
LVSNVVVEQEGEDSNSGKLNELFTFFGQFIDHDSALTPVNSNEAFDIEIP
EDDPFLSAPLEFFRSQRAAVSQGSSVERPITAATSALDLSTVYGPDEERN
ELLRINGDCRLKTSAGNFLPLNSFGLENGPPGGGARFFAAGDSRSNETPM
LTIMHTIWVREHNFICDTLESDPSFGVTDPDELFEMARAVTIAEYQKIVY
NEWLPALLGSTLSTYSGYDSSVDPTVSVEFTTAAFRLGHTLVGNDVTRVD
STGTTLPPIPATEMFFLTAEDFVANGLEDFLRGSIVTKAQEFDEKIVDSL
RNLLFEEVPNEEGFDLMALNLQRARDHNIPSFNDIREFFLGSRVSSFSQI
STSSAANLEEAYGDVDKVEAWIGLMAEDKKPGSVVGPTLDAFLRTEFGRL
RDGDQFFYLISGRVPDIVLSTYPSLGSDIFSPKNLFNKILKRNSNIENRF
VPGNSNSFKA*
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mRNA from alignment at ScGOVlb_3404:5386706..5388388-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12490.t1 ID=Gvermi12490.t1|Name=Gvermi12490.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1683bp|location=Sequence derived from alignment at ScGOVlb_3404:5386706..5388388- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGGTCTTTATCTGCATCATGAGCGTTGCTGGACTTTTATGCTCCTC
AGTCCATGGTCAGGCACCATTTTCCAACGCCAGGGGAAGGGGAGCTAGAG
CTCTCTCTCCTCTGCCGCCACCTCTATCACTTGCTACTTCTGGTTCGGAT
CCGGAGTGCGTAGGATTAACGTTCCGCCCGATCAACGGAAGATGCACCTC
GGCGGCAAATGCTGCTCTCGGAGAAGCGGGGCGAGCCCAATTCAGCTATT
TCAATCTCAACTCGATTCAACCAATTGGCGCGGATCTGCCCAGCCCCCGC
CTGGTCTCAAACGTTGTAGTGGAGCAGGAAGGTGAAGACAGCAACTCTGG
AAAATTGAATGAGTTGTTCACCTTCTTCGGTCAGTTTATTGATCACGACT
CTGCGCTTACCCCCGTCAACAGTAATGAGGCATTTGATATTGAAATTCCA
GAAGATGATCCTTTTCTTTCGGCTCCTTTGGAATTTTTTCGTTCTCAACG
TGCTGCCGTCTCTCAGGGCTCGTCAGTGGAACGACCGATCACGGCAGCGA
CATCCGCTTTGGACCTGTCGACGGTTTACGGTCCTGACGAAGAACGCAAT
GAACTTCTTCGAATCAATGGTGACTGTCGCCTCAAGACATCTGCCGGTAA
TTTTCTTCCATTGAACAGCTTCGGTTTAGAAAACGGTCCTCCGGGAGGTG
GTGCTCGATTCTTTGCTGCTGGAGACTCAAGAAGCAATGAAACCCCTATG
CTTACAATCATGCACACAATATGGGTACGAGAGCACAATTTCATTTGTGA
TACTCTCGAATCAGACCCTTCTTTTGGTGTCACTGATCCTGATGAGCTAT
TTGAGATGGCAAGAGCAGTCACAATTGCCGAATACCAGAAGATTGTCTAC
AACGAATGGCTTCCCGCTTTATTGGGCTCCACACTGAGCACGTACTCTGG
ATATGACTCATCTGTGGATCCGACCGTGAGCGTTGAGTTCACCACGGCTG
CCTTCCGTCTTGGCCATACACTTGTTGGAAATGATGTGACCAGAGTGGAT
TCCACAGGAACAACTCTTCCGCCTATTCCTGCAACTGAGATGTTCTTCCT
CACCGCTGAGGATTTCGTTGCAAACGGTCTGGAAGACTTTCTTAGAGGCT
CAATTGTGACTAAGGCGCAAGAGTTTGATGAAAAAATCGTTGACAGCTTG
AGAAACCTCCTGTTCGAAGAGGTTCCAAATGAGGAAGGATTTGACTTAAT
GGCTCTCAACTTGCAGCGTGCTCGAGACCACAATATTCCGTCTTTCAATG
ACATTCGTGAATTTTTCCTGGGTAGCAGGGTTTCAAGCTTCTCTCAGATT
TCAACGTCTTCGGCTGCTAACCTTGAGGAAGCATACGGTGATGTAGACAA
GGTAGAAGCATGGATCGGGCTGATGGCTGAAGACAAAAAGCCCGGTTCCG
TGGTAGGTCCCACTCTTGATGCCTTTCTCAGAACCGAGTTCGGACGTCTC
CGCGACGGGGATCAGTTCTTCTATCTGATTTCTGGTCGTGTTCCTGATAT
TGTTCTTTCGACGTATCCGAGTCTTGGGTCTGACATATTCTCTCCGAAAA
ACTTGTTCAACAAAATTTTGAAGAGAAACTCCAATATTGAAAATAGATTT
GTTCCCGGAAATTCAAATTCTTTCAAGGCTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:5386706..5388388-

>Gvermi12490.t1 ID=Gvermi12490.t1|Name=Gvermi12490.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1683bp|location=Sequence derived from alignment at ScGOVlb_3404:5386706..5388388- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGGTCTTTATCTGCATCATGAGCGTTGCTGGACTTTTATGCTCCTC
AGTCCATGGTCAGGCACCATTTTCCAACGCCAGGGGAAGGGGAGCTAGAG
CTCTCTCTCCTCTGCCGCCACCTCTATCACTTGCTACTTCTGGTTCGGAT
CCGGAGTGCGTAGGATTAACGTTCCGCCCGATCAACGGAAGATGCACCTC
GGCGGCAAATGCTGCTCTCGGAGAAGCGGGGCGAGCCCAATTCAGCTATT
TCAATCTCAACTCGATTCAACCAATTGGCGCGGATCTGCCCAGCCCCCGC
CTGGTCTCAAACGTTGTAGTGGAGCAGGAAGGTGAAGACAGCAACTCTGG
AAAATTGAATGAGTTGTTCACCTTCTTCGGTCAGTTTATTGATCACGACT
CTGCGCTTACCCCCGTCAACAGTAATGAGGCATTTGATATTGAAATTCCA
GAAGATGATCCTTTTCTTTCGGCTCCTTTGGAATTTTTTCGTTCTCAACG
TGCTGCCGTCTCTCAGGGCTCGTCAGTGGAACGACCGATCACGGCAGCGA
CATCCGCTTTGGACCTGTCGACGGTTTACGGTCCTGACGAAGAACGCAAT
GAACTTCTTCGAATCAATGGTGACTGTCGCCTCAAGACATCTGCCGGTAA
TTTTCTTCCATTGAACAGCTTCGGTTTAGAAAACGGTCCTCCGGGAGGTG
GTGCTCGATTCTTTGCTGCTGGAGACTCAAGAAGCAATGAAACCCCTATG
CTTACAATCATGCACACAATATGGGTACGAGAGCACAATTTCATTTGTGA
TACTCTCGAATCAGACCCTTCTTTTGGTGTCACTGATCCTGATGAGCTAT
TTGAGATGGCAAGAGCAGTCACAATTGCCGAATACCAGAAGATTGTCTAC
AACGAATGGCTTCCCGCTTTATTGGGCTCCACACTGAGCACGTACTCTGG
ATATGACTCATCTGTGGATCCGACCGTGAGCGTTGAGTTCACCACGGCTG
CCTTCCGTCTTGGCCATACACTTGTTGGAAATGATGTGACCAGAGTGGAT
TCCACAGGAACAACTCTTCCGCCTATTCCTGCAACTGAGATGTTCTTCCT
CACCGCTGAGGATTTCGTTGCAAACGGTCTGGAAGACTTTCTTAGAGGCT
CAATTGTGACTAAGGCGCAAGAGTTTGATGAAAAAATCGTTGACAGCTTG
AGAAACCTCCTGTTCGAAGAGGTTCCAAATGAGGAAGGATTTGACTTAAT
GGCTCTCAACTTGCAGCGTGCTCGAGACCACAATATTCCGTCTTTCAATG
ACATTCGTGAATTTTTCCTGGGTAGCAGGGTTTCAAGCTTCTCTCAGATT
TCAACGTCTTCGGCTGCTAACCTTGAGGAAGCATACGGTGATGTAGACAA
GGTAGAAGCATGGATCGGGCTGATGGCTGAAGACAAAAAGCCCGGTTCCG
TGGTAGGTCCCACTCTTGATGCCTTTCTCAGAACCGAGTTCGGACGTCTC
CGCGACGGGGATCAGTTCTTCTATCTGATTTCTGGTCGTGTTCCTGATAT
TGTTCTTTCGACGTATCCGAGTCTTGGGTCTGACATATTCTCTCCGAAAA
ACTTGTTCAACAAAATTTTGAAGAGAAACTCCAATATTGAAAATAGATTT
GTTCCCGGAAATTCAAATTCTTTCAAGGCTTAA
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