Gvermi12489.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12489.t1
Unique NameGvermi12489.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length528
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5382706..5384289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12489Gvermi12489Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 5382706..5384289 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12489.t1.stop1Gvermi12489.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 5382706..5382708 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12489.t1.CDS1Gvermi12489.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5382706..5384289 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12489.t1.exon1Gvermi12489.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5382706..5384289 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12489.t1.start1Gvermi12489.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 5384287..5384289 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12489.t1Gvermi12489.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 5382706..5384289 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12489.t1 ID=Gvermi12489.t1|Name=Gvermi12489.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=528bp
MPINTFACHFIPTSLYLCHVRKIHEDVQKYSDKHEHLEAYFKRMKETVVE
IDVLFTYENSFVDGYLSFQEDNFNVRFRERSLITTLCLLCAVIGENLRGL
KIPSFQHVVEQDKLYSSIATHCSNLEEFHQSFHPNDFKGRFQYSLTGFQH
LKTLRLCSPDSHVMSMLAVSPIFIEELRLHRLGADALKLVPNVIREKGSR
LKKLCVESESGKNSDTGLQEHEQTLKSIANRCISFLVEFSKYLFYLVELR
LILSSVSINSTNALIRNLLEKYKGRTDIEIGCDDFAVVKKFSRGEPENYY
LTQLSPFSLFVKEIGNNPKRLQQLKKLDFGDWNCIHHSSDVFLLQKIKQS
SEIDVKHINMGKFPGLACDQKQFYEVMDGILNLNHGDLTITCNCNIIRFL
VEMMFQGTEKWDLLAPQLAKINKLNLMGISHCSSVDRCNECILGFNELVR
SMPVFLSEILPMMFSIRAVTLADPIVIQNVSNSIYLQNLWQTLQFIDQLK
KDFEKVDLSIIRTQFQLLLEESESPRL*
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spliced messenger RNA

>Gvermi12489.t1 ID=Gvermi12489.t1|Name=Gvermi12489.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1584bp|location=Sequence derived from alignment at ScGOVlb_3404:5382706..5384289- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGATAAATACATTCGCATGTCATTTCATTCCAACGTCTCTTTATCT
TTGTCACGTCCGCAAAATTCACGAGGATGTTCAAAAATATTCTGACAAAC
ATGAACATCTTGAAGCATATTTCAAACGCATGAAAGAGACCGTCGTTGAA
ATTGATGTTCTATTTACGTACGAAAACTCATTCGTGGATGGATATCTTTC
TTTTCAGGAAGATAATTTCAATGTACGCTTTCGAGAAAGATCTCTGATCA
CGACTTTATGCCTTCTATGTGCTGTTATTGGAGAAAACCTTCGGGGATTG
AAAATTCCTTCATTTCAACATGTCGTAGAACAGGATAAACTATATTCATC
AATCGCAACCCATTGCTCGAACCTTGAGGAATTTCATCAATCATTTCATC
CTAATGATTTTAAAGGAAGGTTTCAATATTCCCTGACAGGATTTCAACAT
CTAAAGACATTGAGACTTTGTTCACCAGATTCTCATGTTATGAGTATGCT
TGCTGTCTCTCCAATTTTCATAGAAGAGTTACGACTTCACAGACTCGGTG
CTGATGCTCTGAAACTCGTTCCAAATGTCATCAGAGAGAAAGGAAGCAGG
CTAAAAAAGCTGTGCGTCGAATCTGAATCTGGGAAAAATAGTGATACGGG
GCTTCAAGAGCATGAACAGACCTTAAAATCCATCGCAAATAGATGTATTA
GTTTTCTAGTTGAGTTTTCTAAGTATCTCTTTTACCTCGTTGAACTTCGA
CTTATTCTGAGCAGCGTCTCCATTAATTCCACAAATGCATTGATCAGAAA
TCTTCTTGAGAAATACAAAGGCAGAACTGACATAGAAATTGGATGTGATG
ATTTTGCGGTCGTGAAAAAATTCTCTCGAGGCGAACCAGAAAATTACTAT
CTGACCCAGCTCTCCCCTTTTTCTCTATTTGTAAAGGAGATAGGAAACAA
TCCAAAAAGATTACAACAACTAAAAAAACTGGATTTTGGAGACTGGAACT
GCATTCATCATTCTAGCGATGTGTTTCTCCTGCAAAAGATCAAACAGAGC
AGTGAAATCGATGTAAAACATATTAATATGGGAAAGTTTCCCGGACTGGC
TTGCGATCAAAAACAATTTTATGAGGTGATGGACGGTATACTGAACTTGA
ACCATGGAGACCTCACAATCACATGCAATTGCAACATTATTCGCTTCCTT
GTCGAAATGATGTTTCAAGGCACAGAAAAATGGGATTTGCTGGCGCCGCA
GCTGGCAAAAATCAACAAGCTAAATCTGATGGGGATTTCCCACTGTTCTT
CTGTAGATCGATGTAATGAATGTATTCTGGGATTCAATGAACTCGTGCGG
AGTATGCCTGTATTTCTTTCTGAAATACTGCCCATGATGTTTTCTATACG
GGCTGTAACATTGGCGGATCCGATCGTCATCCAAAATGTCTCCAACTCGA
TTTATTTGCAGAATCTATGGCAAACTTTACAGTTCATCGACCAGCTCAAA
AAAGACTTTGAAAAAGTCGATTTAAGCATTATTAGAACCCAATTTCAGTT
GCTTCTTGAAGAGTCTGAATCTCCTAGACTCTAA
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protein sequence of Gvermi12489.t1

>Gvermi12489.t1 ID=Gvermi12489.t1|Name=Gvermi12489.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=528bp
MPINTFACHFIPTSLYLCHVRKIHEDVQKYSDKHEHLEAYFKRMKETVVE
IDVLFTYENSFVDGYLSFQEDNFNVRFRERSLITTLCLLCAVIGENLRGL
KIPSFQHVVEQDKLYSSIATHCSNLEEFHQSFHPNDFKGRFQYSLTGFQH
LKTLRLCSPDSHVMSMLAVSPIFIEELRLHRLGADALKLVPNVIREKGSR
LKKLCVESESGKNSDTGLQEHEQTLKSIANRCISFLVEFSKYLFYLVELR
LILSSVSINSTNALIRNLLEKYKGRTDIEIGCDDFAVVKKFSRGEPENYY
LTQLSPFSLFVKEIGNNPKRLQQLKKLDFGDWNCIHHSSDVFLLQKIKQS
SEIDVKHINMGKFPGLACDQKQFYEVMDGILNLNHGDLTITCNCNIIRFL
VEMMFQGTEKWDLLAPQLAKINKLNLMGISHCSSVDRCNECILGFNELVR
SMPVFLSEILPMMFSIRAVTLADPIVIQNVSNSIYLQNLWQTLQFIDQLK
KDFEKVDLSIIRTQFQLLLEESESPRL*
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mRNA from alignment at ScGOVlb_3404:5382706..5384289-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12489.t1 ID=Gvermi12489.t1|Name=Gvermi12489.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1584bp|location=Sequence derived from alignment at ScGOVlb_3404:5382706..5384289- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGATAAATACATTCGCATGTCATTTCATTCCAACGTCTCTTTATCT
TTGTCACGTCCGCAAAATTCACGAGGATGTTCAAAAATATTCTGACAAAC
ATGAACATCTTGAAGCATATTTCAAACGCATGAAAGAGACCGTCGTTGAA
ATTGATGTTCTATTTACGTACGAAAACTCATTCGTGGATGGATATCTTTC
TTTTCAGGAAGATAATTTCAATGTACGCTTTCGAGAAAGATCTCTGATCA
CGACTTTATGCCTTCTATGTGCTGTTATTGGAGAAAACCTTCGGGGATTG
AAAATTCCTTCATTTCAACATGTCGTAGAACAGGATAAACTATATTCATC
AATCGCAACCCATTGCTCGAACCTTGAGGAATTTCATCAATCATTTCATC
CTAATGATTTTAAAGGAAGGTTTCAATATTCCCTGACAGGATTTCAACAT
CTAAAGACATTGAGACTTTGTTCACCAGATTCTCATGTTATGAGTATGCT
TGCTGTCTCTCCAATTTTCATAGAAGAGTTACGACTTCACAGACTCGGTG
CTGATGCTCTGAAACTCGTTCCAAATGTCATCAGAGAGAAAGGAAGCAGG
CTAAAAAAGCTGTGCGTCGAATCTGAATCTGGGAAAAATAGTGATACGGG
GCTTCAAGAGCATGAACAGACCTTAAAATCCATCGCAAATAGATGTATTA
GTTTTCTAGTTGAGTTTTCTAAGTATCTCTTTTACCTCGTTGAACTTCGA
CTTATTCTGAGCAGCGTCTCCATTAATTCCACAAATGCATTGATCAGAAA
TCTTCTTGAGAAATACAAAGGCAGAACTGACATAGAAATTGGATGTGATG
ATTTTGCGGTCGTGAAAAAATTCTCTCGAGGCGAACCAGAAAATTACTAT
CTGACCCAGCTCTCCCCTTTTTCTCTATTTGTAAAGGAGATAGGAAACAA
TCCAAAAAGATTACAACAACTAAAAAAACTGGATTTTGGAGACTGGAACT
GCATTCATCATTCTAGCGATGTGTTTCTCCTGCAAAAGATCAAACAGAGC
AGTGAAATCGATGTAAAACATATTAATATGGGAAAGTTTCCCGGACTGGC
TTGCGATCAAAAACAATTTTATGAGGTGATGGACGGTATACTGAACTTGA
ACCATGGAGACCTCACAATCACATGCAATTGCAACATTATTCGCTTCCTT
GTCGAAATGATGTTTCAAGGCACAGAAAAATGGGATTTGCTGGCGCCGCA
GCTGGCAAAAATCAACAAGCTAAATCTGATGGGGATTTCCCACTGTTCTT
CTGTAGATCGATGTAATGAATGTATTCTGGGATTCAATGAACTCGTGCGG
AGTATGCCTGTATTTCTTTCTGAAATACTGCCCATGATGTTTTCTATACG
GGCTGTAACATTGGCGGATCCGATCGTCATCCAAAATGTCTCCAACTCGA
TTTATTTGCAGAATCTATGGCAAACTTTACAGTTCATCGACCAGCTCAAA
AAAGACTTTGAAAAAGTCGATTTAAGCATTATTAGAACCCAATTTCAGTT
GCTTCTTGAAGAGTCTGAATCTCCTAGACTCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:5382706..5384289-

>Gvermi12489.t1 ID=Gvermi12489.t1|Name=Gvermi12489.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1584bp|location=Sequence derived from alignment at ScGOVlb_3404:5382706..5384289- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGATAAATACATTCGCATGTCATTTCATTCCAACGTCTCTTTATCT
TTGTCACGTCCGCAAAATTCACGAGGATGTTCAAAAATATTCTGACAAAC
ATGAACATCTTGAAGCATATTTCAAACGCATGAAAGAGACCGTCGTTGAA
ATTGATGTTCTATTTACGTACGAAAACTCATTCGTGGATGGATATCTTTC
TTTTCAGGAAGATAATTTCAATGTACGCTTTCGAGAAAGATCTCTGATCA
CGACTTTATGCCTTCTATGTGCTGTTATTGGAGAAAACCTTCGGGGATTG
AAAATTCCTTCATTTCAACATGTCGTAGAACAGGATAAACTATATTCATC
AATCGCAACCCATTGCTCGAACCTTGAGGAATTTCATCAATCATTTCATC
CTAATGATTTTAAAGGAAGGTTTCAATATTCCCTGACAGGATTTCAACAT
CTAAAGACATTGAGACTTTGTTCACCAGATTCTCATGTTATGAGTATGCT
TGCTGTCTCTCCAATTTTCATAGAAGAGTTACGACTTCACAGACTCGGTG
CTGATGCTCTGAAACTCGTTCCAAATGTCATCAGAGAGAAAGGAAGCAGG
CTAAAAAAGCTGTGCGTCGAATCTGAATCTGGGAAAAATAGTGATACGGG
GCTTCAAGAGCATGAACAGACCTTAAAATCCATCGCAAATAGATGTATTA
GTTTTCTAGTTGAGTTTTCTAAGTATCTCTTTTACCTCGTTGAACTTCGA
CTTATTCTGAGCAGCGTCTCCATTAATTCCACAAATGCATTGATCAGAAA
TCTTCTTGAGAAATACAAAGGCAGAACTGACATAGAAATTGGATGTGATG
ATTTTGCGGTCGTGAAAAAATTCTCTCGAGGCGAACCAGAAAATTACTAT
CTGACCCAGCTCTCCCCTTTTTCTCTATTTGTAAAGGAGATAGGAAACAA
TCCAAAAAGATTACAACAACTAAAAAAACTGGATTTTGGAGACTGGAACT
GCATTCATCATTCTAGCGATGTGTTTCTCCTGCAAAAGATCAAACAGAGC
AGTGAAATCGATGTAAAACATATTAATATGGGAAAGTTTCCCGGACTGGC
TTGCGATCAAAAACAATTTTATGAGGTGATGGACGGTATACTGAACTTGA
ACCATGGAGACCTCACAATCACATGCAATTGCAACATTATTCGCTTCCTT
GTCGAAATGATGTTTCAAGGCACAGAAAAATGGGATTTGCTGGCGCCGCA
GCTGGCAAAAATCAACAAGCTAAATCTGATGGGGATTTCCCACTGTTCTT
CTGTAGATCGATGTAATGAATGTATTCTGGGATTCAATGAACTCGTGCGG
AGTATGCCTGTATTTCTTTCTGAAATACTGCCCATGATGTTTTCTATACG
GGCTGTAACATTGGCGGATCCGATCGTCATCCAAAATGTCTCCAACTCGA
TTTATTTGCAGAATCTATGGCAAACTTTACAGTTCATCGACCAGCTCAAA
AAAGACTTTGAAAAAGTCGATTTAAGCATTATTAGAACCCAATTTCAGTT
GCTTCTTGAAGAGTCTGAATCTCCTAGACTCTAA
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