Gvermi12482.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12482.t1
Unique NameGvermi12482.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length323
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5215348..5216316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1395571.TMS3_0115070
Preferred nameghrA
PFAMs2-Hacid_dh_C
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC00031,RC00042,RC00670
KEGG koko:K12972
KEGG ReactionR00465,R01388,R01392,R02527
KEGG Pathwayko00260,ko00620,ko00630,ko01100,ko01110,ko01120,map00260,map00620,map00630,map01100,map01110,map01120
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0016491,GO:0016614,GO:0016616,GO:0016618,GO:0030267,GO:0044424,GO:0044444,GO:0044464,GO:0055114
Evalue4.58e-69
EggNOG OGsCOG0111@1|root,COG0111@2|Bacteria,1MW1U@1224|Proteobacteria,1RRQE@1236|Gammaproteobacteria
EC1.1.1.79,1.1.1.81
DescriptionD-isomer specific 2-hydroxyacid dehydrogenase
COG categoryEH
BiGG ReactioniECOK1_1307.ECOK1_1138,iECS88_1305.ECS88_1044,iUMN146_1321.UM146_12160
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12482Gvermi12482Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 5215348..5216316 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12482.t1.start1Gvermi12482.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 5215348..5215350 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12482.t1.CDS1Gvermi12482.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5215348..5216316 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12482.t1.exon1Gvermi12482.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5215348..5216316 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12482.t1.stop1Gvermi12482.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 5216314..5216316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12482.t1Gvermi12482.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 5215348..5216316 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12482.t1 ID=Gvermi12482.t1|Name=Gvermi12482.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=323bp
MIGTVLLELYEDQGNIDYEWKNALDQLLPDHKIMVWEKSTASNNTIRKDL
EEVEFVVMWAIPFSELAKLPKLRAVLLIGAGTDHLKDLHALASHIPIVRL
VDKTVARDMGAYALHWVMHFHLGFDKYLRQQAHGVWKQCPARVDRSQFTV
GVMGMGFIGRAVCDALLAMGYRVLSLSRSGRNYKSVEAFTNERIYLFAAR
CNALVNVLPLTDDTRGLVNAQVLHTLQREAVFINMGRGETVVDGVILDAL
HDGHLRAAVLDVFHEEPLPLNSKFWTEDKVVVTPHIAGQPFARSSAKIVA
DNIRRIERGERPFPILDRCNGY*
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spliced messenger RNA

>Gvermi12482.t1 ID=Gvermi12482.t1|Name=Gvermi12482.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=969bp|location=Sequence derived from alignment at ScGOVlb_3404:5215348..5216316+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGGAACCGTATTATTGGAATTATATGAGGATCAGGGAAACATAGA
TTATGAATGGAAGAACGCTTTGGATCAGCTATTACCAGACCACAAAATAA
TGGTGTGGGAAAAGTCTACAGCATCAAACAACACAATACGGAAAGACCTT
GAAGAGGTTGAGTTCGTTGTCATGTGGGCAATACCGTTCAGCGAATTGGC
AAAGCTACCAAAGCTTCGAGCTGTACTACTCATTGGCGCAGGTACAGACC
ATCTGAAGGATTTGCATGCCCTAGCCTCTCACATTCCGATTGTGCGACTT
GTTGATAAAACAGTAGCCCGCGACATGGGCGCTTATGCGTTACACTGGGT
CATGCACTTTCACCTTGGCTTCGACAAGTATCTTCGCCAACAGGCTCACG
GTGTGTGGAAACAGTGTCCGGCACGCGTCGATAGGAGTCAATTTACTGTC
GGGGTGATGGGAATGGGCTTCATAGGACGAGCTGTCTGCGATGCTCTCCT
AGCAATGGGCTATCGCGTCCTGTCTTTGAGTCGGTCTGGCCGAAACTACA
AATCCGTAGAAGCATTTACGAATGAACGCATATATTTGTTCGCAGCCAGA
TGTAATGCGCTGGTGAATGTTCTTCCTCTGACGGATGACACCCGTGGATT
GGTTAACGCACAGGTACTTCACACCTTACAGCGAGAGGCTGTCTTTATAA
ATATGGGGCGGGGTGAAACGGTCGTTGATGGAGTCATTCTCGATGCGCTT
CATGATGGTCATCTCAGAGCAGCAGTTCTTGATGTTTTTCACGAGGAACC
GTTGCCTCTCAATTCCAAATTTTGGACTGAAGACAAGGTTGTCGTCACAC
CTCACATAGCCGGCCAGCCGTTTGCTCGATCTTCTGCAAAGATAGTAGCT
GACAATATCAGACGAATTGAACGCGGGGAGCGACCGTTTCCAATTCTAGA
CCGCTGCAATGGATACTAA
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protein sequence of Gvermi12482.t1

>Gvermi12482.t1 ID=Gvermi12482.t1|Name=Gvermi12482.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=323bp
MIGTVLLELYEDQGNIDYEWKNALDQLLPDHKIMVWEKSTASNNTIRKDL
EEVEFVVMWAIPFSELAKLPKLRAVLLIGAGTDHLKDLHALASHIPIVRL
VDKTVARDMGAYALHWVMHFHLGFDKYLRQQAHGVWKQCPARVDRSQFTV
GVMGMGFIGRAVCDALLAMGYRVLSLSRSGRNYKSVEAFTNERIYLFAAR
CNALVNVLPLTDDTRGLVNAQVLHTLQREAVFINMGRGETVVDGVILDAL
HDGHLRAAVLDVFHEEPLPLNSKFWTEDKVVVTPHIAGQPFARSSAKIVA
DNIRRIERGERPFPILDRCNGY*
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mRNA from alignment at ScGOVlb_3404:5215348..5216316+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12482.t1 ID=Gvermi12482.t1|Name=Gvermi12482.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=969bp|location=Sequence derived from alignment at ScGOVlb_3404:5215348..5216316+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCGGAACCGTATTATTGGAATTATATGAGGATCAGGGAAACATAGA
TTATGAATGGAAGAACGCTTTGGATCAGCTATTACCAGACCACAAAATAA
TGGTGTGGGAAAAGTCTACAGCATCAAACAACACAATACGGAAAGACCTT
GAAGAGGTTGAGTTCGTTGTCATGTGGGCAATACCGTTCAGCGAATTGGC
AAAGCTACCAAAGCTTCGAGCTGTACTACTCATTGGCGCAGGTACAGACC
ATCTGAAGGATTTGCATGCCCTAGCCTCTCACATTCCGATTGTGCGACTT
GTTGATAAAACAGTAGCCCGCGACATGGGCGCTTATGCGTTACACTGGGT
CATGCACTTTCACCTTGGCTTCGACAAGTATCTTCGCCAACAGGCTCACG
GTGTGTGGAAACAGTGTCCGGCACGCGTCGATAGGAGTCAATTTACTGTC
GGGGTGATGGGAATGGGCTTCATAGGACGAGCTGTCTGCGATGCTCTCCT
AGCAATGGGCTATCGCGTCCTGTCTTTGAGTCGGTCTGGCCGAAACTACA
AATCCGTAGAAGCATTTACGAATGAACGCATATATTTGTTCGCAGCCAGA
TGTAATGCGCTGGTGAATGTTCTTCCTCTGACGGATGACACCCGTGGATT
GGTTAACGCACAGGTACTTCACACCTTACAGCGAGAGGCTGTCTTTATAA
ATATGGGGCGGGGTGAAACGGTCGTTGATGGAGTCATTCTCGATGCGCTT
CATGATGGTCATCTCAGAGCAGCAGTTCTTGATGTTTTTCACGAGGAACC
GTTGCCTCTCAATTCCAAATTTTGGACTGAAGACAAGGTTGTCGTCACAC
CTCACATAGCCGGCCAGCCGTTTGCTCGATCTTCTGCAAAGATAGTAGCT
GACAATATCAGACGAATTGAACGCGGGGAGCGACCGTTTCCAATTCTAGA
CCGCTGCAATGGATACTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:5215348..5216316+

>Gvermi12482.t1 ID=Gvermi12482.t1|Name=Gvermi12482.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=969bp|location=Sequence derived from alignment at ScGOVlb_3404:5215348..5216316+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCGGAACCGTATTATTGGAATTATATGAGGATCAGGGAAACATAGA
TTATGAATGGAAGAACGCTTTGGATCAGCTATTACCAGACCACAAAATAA
TGGTGTGGGAAAAGTCTACAGCATCAAACAACACAATACGGAAAGACCTT
GAAGAGGTTGAGTTCGTTGTCATGTGGGCAATACCGTTCAGCGAATTGGC
AAAGCTACCAAAGCTTCGAGCTGTACTACTCATTGGCGCAGGTACAGACC
ATCTGAAGGATTTGCATGCCCTAGCCTCTCACATTCCGATTGTGCGACTT
GTTGATAAAACAGTAGCCCGCGACATGGGCGCTTATGCGTTACACTGGGT
CATGCACTTTCACCTTGGCTTCGACAAGTATCTTCGCCAACAGGCTCACG
GTGTGTGGAAACAGTGTCCGGCACGCGTCGATAGGAGTCAATTTACTGTC
GGGGTGATGGGAATGGGCTTCATAGGACGAGCTGTCTGCGATGCTCTCCT
AGCAATGGGCTATCGCGTCCTGTCTTTGAGTCGGTCTGGCCGAAACTACA
AATCCGTAGAAGCATTTACGAATGAACGCATATATTTGTTCGCAGCCAGA
TGTAATGCGCTGGTGAATGTTCTTCCTCTGACGGATGACACCCGTGGATT
GGTTAACGCACAGGTACTTCACACCTTACAGCGAGAGGCTGTCTTTATAA
ATATGGGGCGGGGTGAAACGGTCGTTGATGGAGTCATTCTCGATGCGCTT
CATGATGGTCATCTCAGAGCAGCAGTTCTTGATGTTTTTCACGAGGAACC
GTTGCCTCTCAATTCCAAATTTTGGACTGAAGACAAGGTTGTCGTCACAC
CTCACATAGCCGGCCAGCCGTTTGCTCGATCTTCTGCAAAGATAGTAGCT
GACAATATCAGACGAATTGAACGCGGGGAGCGACCGTTTCCAATTCTAGA
CCGCTGCAATGGATACTAA
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