Gvermi12480.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12480.t1
Unique NameGvermi12480.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length468
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5174005..5175834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog65093.PCC7418_0393
PFAMsFAD_binding_3
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00046
KEGG koko:K00486
KEGG ReactionR01960
KEGG Pathwayko00380,ko01100,map00380,map01100
KEGG ModuleM00038
Evalue7.29e-36
EggNOG OGsCOG0654@1|root,COG0654@2|Bacteria,1G3KH@1117|Cyanobacteria
EC1.14.13.9
DescriptionCOG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent
COG categoryCH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12480Gvermi12480Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 5174005..5175834 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12480.t1Gvermi12480.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 5174005..5175834 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12480.t1.stop1Gvermi12480.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 5174005..5174007 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12480.t1.CDS1Gvermi12480.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5174005..5174044 -
Gvermi12480.t1.CDS2Gvermi12480.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5174471..5175834 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12480.t1.exon1Gvermi12480.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5174005..5174044 -
Gvermi12480.t1.exon2Gvermi12480.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5174471..5175834 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12480.t1.intron1Gvermi12480.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 5174045..5174470 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12480.t1.start1Gvermi12480.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 5175832..5175834 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12480.t1 ID=Gvermi12480.t1|Name=Gvermi12480.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=468bp
MAGTTLQSAKIVIVGCGLAGYTTAAALAQAGCNNVVVYDSRDDPTMFETD
RAYSLVIYRNGQRLLNKLDGFDQIFKKDAFCQHVRVVNRITADAKQEIIT
SRPASGPVYWLLKSRCLQLLDAYVRERYPHVKLVTNTTVQDVLFERDGTQ
LLTSSADGKSEKVAVDLLIACDGSNSTIRKLMAVHDDEIESVNGMGMYSK
ESPATGIRHKGIVLNSMPIISAPNEPTQYAQPSVIYYIYGQRRGRASERV
FDIMLLPVCSGTNVQRRAALSVEDGHHVLSVQSVEEAFALFRENFPQLRV
DEVFSAEEMRRFVETRASAFPPIQRPNSLVGHFRRSGGEGGVMFIGDSAH
SFPPDTAQGVNCAFQDVQHLLELVSELGEKASVREVLREYERRRDKECWT
LTQLCQVAAPYSYRHNSAAGFARYMLNKRVRRALSNVAPALFSEDLDTLI
RQGLTIAVQAKVSHETS*
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spliced messenger RNA

>Gvermi12480.t1 ID=Gvermi12480.t1|Name=Gvermi12480.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1404bp|location=Sequence derived from alignment at ScGOVlb_3404:5174005..5175834- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGGCACAACCCTTCAGTCGGCCAAGATCGTCATCGTGGGATGCGG
GCTCGCCGGTTACACCACCGCCGCCGCCCTGGCCCAAGCCGGGTGCAACA
ACGTCGTCGTATACGACAGCCGTGACGACCCGACCATGTTCGAAACCGAT
CGCGCCTACAGTTTGGTCATTTACCGCAACGGCCAACGGCTACTCAACAA
GCTCGACGGCTTTGACCAAATCTTCAAGAAGGACGCCTTCTGCCAACACG
TGCGCGTCGTCAATCGCATCACCGCCGACGCCAAGCAGGAAATCATCACC
AGCCGCCCGGCGTCGGGCCCGGTGTACTGGCTGCTCAAGTCGCGCTGCTT
GCAGCTGCTGGACGCGTACGTGAGGGAGCGCTACCCGCACGTGAAGCTGG
TCACCAACACCACCGTGCAAGACGTGCTGTTCGAGCGCGACGGCACCCAG
CTGTTGACCAGCAGCGCTGACGGCAAGTCGGAAAAGGTGGCGGTGGACCT
GTTGATCGCGTGCGACGGGTCGAACTCCACCATCCGCAAGCTCATGGCCG
TGCACGACGACGAAATCGAAAGCGTCAACGGCATGGGCATGTACTCGAAG
GAGTCGCCCGCGACGGGCATTCGGCACAAGGGCATCGTGCTGAACAGCAT
GCCCATCATCTCTGCGCCCAACGAGCCCACGCAGTACGCGCAGCCGTCGG
TGATCTACTACATCTACGGGCAACGACGGGGGCGCGCCAGCGAGCGCGTG
TTCGACATCATGCTGCTGCCCGTGTGCTCCGGCACCAACGTGCAGCGGCG
CGCGGCGCTGTCGGTGGAGGACGGGCACCACGTGCTGTCAGTGCAGTCGG
TGGAGGAGGCGTTTGCGCTGTTCCGCGAGAACTTCCCGCAGCTGCGCGTG
GACGAGGTGTTCTCGGCGGAGGAGATGAGGCGGTTCGTGGAGACGCGCGC
GTCGGCGTTCCCGCCGATCCAGCGCCCCAACTCGCTGGTGGGGCACTTCC
GGCGCAGCGGCGGCGAGGGGGGGGTGATGTTCATCGGCGACAGCGCGCAC
AGCTTCCCGCCGGACACGGCGCAGGGCGTGAACTGCGCGTTCCAGGACGT
GCAGCACCTGCTGGAGCTGGTGAGCGAGCTGGGCGAGAAGGCGTCCGTGC
GCGAGGTGCTGCGCGAGTACGAGCGGCGCCGCGACAAGGAGTGCTGGACG
CTGACGCAGCTGTGCCAGGTGGCGGCGCCGTATTCGTACCGGCACAACAG
CGCGGCGGGCTTTGCGCGCTACATGCTCAACAAGCGCGTGCGCCGCGCGC
TGTCCAACGTGGCGCCGGCGCTGTTCTCGGAGGACCTGGACACGCTCATC
CGCCAGGGCCTGACTATTGCAGTTCAGGCGAAAGTATCTCACGAGACTAG
CTAG
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protein sequence of Gvermi12480.t1

>Gvermi12480.t1 ID=Gvermi12480.t1|Name=Gvermi12480.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=468bp
MAGTTLQSAKIVIVGCGLAGYTTAAALAQAGCNNVVVYDSRDDPTMFETD
RAYSLVIYRNGQRLLNKLDGFDQIFKKDAFCQHVRVVNRITADAKQEIIT
SRPASGPVYWLLKSRCLQLLDAYVRERYPHVKLVTNTTVQDVLFERDGTQ
LLTSSADGKSEKVAVDLLIACDGSNSTIRKLMAVHDDEIESVNGMGMYSK
ESPATGIRHKGIVLNSMPIISAPNEPTQYAQPSVIYYIYGQRRGRASERV
FDIMLLPVCSGTNVQRRAALSVEDGHHVLSVQSVEEAFALFRENFPQLRV
DEVFSAEEMRRFVETRASAFPPIQRPNSLVGHFRRSGGEGGVMFIGDSAH
SFPPDTAQGVNCAFQDVQHLLELVSELGEKASVREVLREYERRRDKECWT
LTQLCQVAAPYSYRHNSAAGFARYMLNKRVRRALSNVAPALFSEDLDTLI
RQGLTIAVQAKVSHETS*
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mRNA from alignment at ScGOVlb_3404:5174005..5175834-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12480.t1 ID=Gvermi12480.t1|Name=Gvermi12480.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1830bp|location=Sequence derived from alignment at ScGOVlb_3404:5174005..5175834- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGGCACAACCCTTCAGTCGGCCAAGATCGTCATCGTGGGATGCGG
GCTCGCCGGTTACACCACCGCCGCCGCCCTGGCCCAAGCCGGGTGCAACA
ACGTCGTCGTATACGACAGCCGTGACGACCCGACCATGTTCGAAACCGAT
CGCGCCTACAGTTTGGTCATTTACCGCAACGGCCAACGGCTACTCAACAA
GCTCGACGGCTTTGACCAAATCTTCAAGAAGGACGCCTTCTGCCAACACG
TGCGCGTCGTCAATCGCATCACCGCCGACGCCAAGCAGGAAATCATCACC
AGCCGCCCGGCGTCGGGCCCGGTGTACTGGCTGCTCAAGTCGCGCTGCTT
GCAGCTGCTGGACGCGTACGTGAGGGAGCGCTACCCGCACGTGAAGCTGG
TCACCAACACCACCGTGCAAGACGTGCTGTTCGAGCGCGACGGCACCCAG
CTGTTGACCAGCAGCGCTGACGGCAAGTCGGAAAAGGTGGCGGTGGACCT
GTTGATCGCGTGCGACGGGTCGAACTCCACCATCCGCAAGCTCATGGCCG
TGCACGACGACGAAATCGAAAGCGTCAACGGCATGGGCATGTACTCGAAG
GAGTCGCCCGCGACGGGCATTCGGCACAAGGGCATCGTGCTGAACAGCAT
GCCCATCATCTCTGCGCCCAACGAGCCCACGCAGTACGCGCAGCCGTCGG
TGATCTACTACATCTACGGGCAACGACGGGGGCGCGCCAGCGAGCGCGTG
TTCGACATCATGCTGCTGCCCGTGTGCTCCGGCACCAACGTGCAGCGGCG
CGCGGCGCTGTCGGTGGAGGACGGGCACCACGTGCTGTCAGTGCAGTCGG
TGGAGGAGGCGTTTGCGCTGTTCCGCGAGAACTTCCCGCAGCTGCGCGTG
GACGAGGTGTTCTCGGCGGAGGAGATGAGGCGGTTCGTGGAGACGCGCGC
GTCGGCGTTCCCGCCGATCCAGCGCCCCAACTCGCTGGTGGGGCACTTCC
GGCGCAGCGGCGGCGAGGGGGGGGTGATGTTCATCGGCGACAGCGCGCAC
AGCTTCCCGCCGGACACGGCGCAGGGCGTGAACTGCGCGTTCCAGGACGT
GCAGCACCTGCTGGAGCTGGTGAGCGAGCTGGGCGAGAAGGCGTCCGTGC
GCGAGGTGCTGCGCGAGTACGAGCGGCGCCGCGACAAGGAGTGCTGGACG
CTGACGCAGCTGTGCCAGGTGGCGGCGCCGTATTCGTACCGGCACAACAG
CGCGGCGGGCTTTGCGCGCTACATGCTCAACAAGCGCGTGCGCCGCGCGC
TGTCCAACGTGGCGCCGGCGCTGTTCTCGGAGGACCTGGACACGCTCATC
CGCCAGGGCCTGACGTACGGCGAGGTGCGCCGGCGCAACCGCCTCACCAC
CGCCGCGCTCTCGCTGCTGGCCGCCGCCGCCATCGCCGTGCCCGTCGCCG
CCGCCGCCGCCGCCTGTCAAACAGCCAGTCAACCTTACGGTACAGATTAG
ACTAGAAGACATCGCGACACGCGAACTCAAAAAGTAAACTACCTCCGCCG
CCTCCCTCGTCCCAACACGCCGTCGTCGCTGCCGCCGCCGCTGACCTGCG
GGGGGGTCGGGGGGAGCGCCCACGCGTACCACGTGTGCACGCTGCGCACG
TTGTCAAGGCTGTGAAGACCTGCGGGGGCGGGGGAGCGCCCACGCGTACC
ACGTGTGCACGCTGCGCACGTTGTCAAGGCTGTGAAGCAAAGCCTCTTTG
CCGACAACACTTTTTCGAAATGTCTTGATGGTGCTTACAGTATTGCAGTT
CAGGCGAAAGTATCTCACGAGACTAGCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:5174005..5175834-

>Gvermi12480.t1 ID=Gvermi12480.t1|Name=Gvermi12480.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1404bp|location=Sequence derived from alignment at ScGOVlb_3404:5174005..5175834- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGGCACAACCCTTCAGTCGGCCAAGATCGTCATCGTGGGATGCGG
GCTCGCCGGTTACACCACCGCCGCCGCCCTGGCCCAAGCCGGGTGCAACA
ACGTCGTCGTATACGACAGCCGTGACGACCCGACCATGTTCGAAACCGAT
CGCGCCTACAGTTTGGTCATTTACCGCAACGGCCAACGGCTACTCAACAA
GCTCGACGGCTTTGACCAAATCTTCAAGAAGGACGCCTTCTGCCAACACG
TGCGCGTCGTCAATCGCATCACCGCCGACGCCAAGCAGGAAATCATCACC
AGCCGCCCGGCGTCGGGCCCGGTGTACTGGCTGCTCAAGTCGCGCTGCTT
GCAGCTGCTGGACGCGTACGTGAGGGAGCGCTACCCGCACGTGAAGCTGG
TCACCAACACCACCGTGCAAGACGTGCTGTTCGAGCGCGACGGCACCCAG
CTGTTGACCAGCAGCGCTGACGGCAAGTCGGAAAAGGTGGCGGTGGACCT
GTTGATCGCGTGCGACGGGTCGAACTCCACCATCCGCAAGCTCATGGCCG
TGCACGACGACGAAATCGAAAGCGTCAACGGCATGGGCATGTACTCGAAG
GAGTCGCCCGCGACGGGCATTCGGCACAAGGGCATCGTGCTGAACAGCAT
GCCCATCATCTCTGCGCCCAACGAGCCCACGCAGTACGCGCAGCCGTCGG
TGATCTACTACATCTACGGGCAACGACGGGGGCGCGCCAGCGAGCGCGTG
TTCGACATCATGCTGCTGCCCGTGTGCTCCGGCACCAACGTGCAGCGGCG
CGCGGCGCTGTCGGTGGAGGACGGGCACCACGTGCTGTCAGTGCAGTCGG
TGGAGGAGGCGTTTGCGCTGTTCCGCGAGAACTTCCCGCAGCTGCGCGTG
GACGAGGTGTTCTCGGCGGAGGAGATGAGGCGGTTCGTGGAGACGCGCGC
GTCGGCGTTCCCGCCGATCCAGCGCCCCAACTCGCTGGTGGGGCACTTCC
GGCGCAGCGGCGGCGAGGGGGGGGTGATGTTCATCGGCGACAGCGCGCAC
AGCTTCCCGCCGGACACGGCGCAGGGCGTGAACTGCGCGTTCCAGGACGT
GCAGCACCTGCTGGAGCTGGTGAGCGAGCTGGGCGAGAAGGCGTCCGTGC
GCGAGGTGCTGCGCGAGTACGAGCGGCGCCGCGACAAGGAGTGCTGGACG
CTGACGCAGCTGTGCCAGGTGGCGGCGCCGTATTCGTACCGGCACAACAG
CGCGGCGGGCTTTGCGCGCTACATGCTCAACAAGCGCGTGCGCCGCGCGC
TGTCCAACGTGGCGCCGGCGCTGTTCTCGGAGGACCTGGACACGCTCATC
CGCCAGGGCCTGACTATTGCAGTTCAGGCGAAAGTATCTCACGAGACTAG
CTAG
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