Gvermi12477.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12477.t1
Unique NameGvermi12477.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length707
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:5149053..5151173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog148304.MAPG_03433T0
Max annot lvl4751|Fungi
Evalue2.29e-14
EggNOG OGs2CUME@1|root,2RN2Y@2759|Eukaryota,38RSC@33154|Opisthokonta,3PTI8@4751|Fungi,3RCXG@4890|Ascomycota,21ITS@147550|Sordariomycetes,41R1K@639021|Magnaporthales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12477Gvermi12477Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 5149053..5151173 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12477.t1.stop1Gvermi12477.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 5149053..5149055 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12477.t1.CDS1Gvermi12477.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 5149053..5151173 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12477.t1.exon1Gvermi12477.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 5149053..5151173 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12477.t1.start1Gvermi12477.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 5151171..5151173 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12477.t1Gvermi12477.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 5149053..5151173 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12477.t1 ID=Gvermi12477.t1|Name=Gvermi12477.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=707bp
MVEENVTADFRTLLPPSETVELLQGSSNSNKKTQATFNEILRFPFLQEIR
AGSLKNDAVKGGTPVLHIVSDGLTYFTSSQITDVNIVRKLSGFAATIPRL
AAVLPRKRLAEVLIGMVTRYAEFANKKSVESKKFYSNFGTAISDTSDAID
ALDGDLDVLRKEIEQLEKSGDDSEFSFFSFIQTSAGAKLLDITRRRIGKY
LTTEVNSEQSLISSLSLVLSVSPDLLTAIFRGSENEPEPDIEKYAELLKD
FQTRLRNVRLLMTALSQNLRNVLRQSVSLMSTWYLILQQLNDLNTTSSPD
EPFAEEEVVVISDAWKSLKKDADEFTASVADVSVTAVTSVLEKNTEVVRR
SLAFTPRSFRAVKALSPEENEALSKITNDEETLRSLEAMTGTSGKIVATF
NKLLRIPFLDSLHVSAAANTGSEKDGSQEERDEESSNIDLETLTLNFLQR
YQKLQADTVPIARNLYSYATLQQRLIPMLKSSLSIENYVKVNLSLIEKRR
AEAQRVHAEHNKFQQDWNTAVLLVQRAIAEQEANIDGLKATIEELAKQKK
RRTLGAIFTFIGAALFTVAAAFTGGMLFVLCGAAAIGMVVTGSVLASQAA
ELQRGIEGYKTALRTAEETLSHFRFVLPIMQEVRDQLKSVTLIWNDITNN
LTDLSTGTEAWEILAFTLQGDEWDPFMNAALENWKNIETSVLAYVAQVSD
VNPTIE*
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spliced messenger RNA

>Gvermi12477.t1 ID=Gvermi12477.t1|Name=Gvermi12477.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2121bp|location=Sequence derived from alignment at ScGOVlb_3404:5149053..5151173- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGAAGAGAACGTCACTGCCGATTTTCGTACCCTTCTGCCCCCATC
GGAAACTGTTGAGCTTCTGCAAGGCTCTTCAAACTCCAACAAGAAGACTC
AGGCCACTTTCAATGAAATTCTCCGGTTTCCATTTTTGCAAGAGATTCGC
GCTGGATCCTTGAAGAATGATGCCGTCAAGGGTGGCACGCCAGTTCTCCA
CATTGTCTCAGACGGCCTCACTTACTTCACGTCCTCACAGATTACTGACG
TCAATATTGTCCGAAAGCTTTCCGGTTTTGCCGCCACCATTCCGCGCCTT
GCTGCTGTTCTCCCGCGCAAACGCCTCGCTGAAGTTCTCATCGGTATGGT
CACCCGCTACGCTGAATTTGCCAATAAGAAATCTGTAGAATCTAAGAAAT
TCTACTCCAACTTTGGTACCGCCATCTCAGACACATCGGACGCAATTGAT
GCCTTAGATGGCGATCTCGATGTACTCAGAAAAGAAATCGAACAATTAGA
AAAGAGTGGGGACGATTCTGAGTTCAGTTTTTTCTCGTTCATCCAAACCA
GTGCCGGAGCCAAGTTGCTTGACATCACCCGTCGTCGTATCGGCAAATAT
CTTACTACGGAAGTCAACTCCGAGCAGTCTTTAATATCGTCTCTGTCCTT
GGTTTTGTCCGTCAGCCCAGACCTGCTGACGGCGATTTTCCGCGGATCCG
AAAACGAGCCCGAGCCCGACATCGAGAAATATGCTGAACTGCTAAAGGAT
TTTCAAACTCGTTTGCGAAACGTGCGCTTGTTAATGACAGCGCTCTCCCA
AAATTTGAGAAATGTGCTCCGTCAGTCCGTCTCACTGATGAGTACATGGT
ATCTCATCCTACAGCAGCTTAACGACCTCAACACGACCAGTTCACCGGAT
GAGCCGTTTGCTGAAGAAGAAGTCGTTGTCATATCCGACGCATGGAAGAG
CCTAAAAAAGGATGCTGATGAGTTCACGGCTTCCGTGGCGGATGTCTCAG
TTACAGCCGTAACCTCTGTACTGGAAAAGAACACTGAGGTTGTCCGACGT
TCACTTGCGTTTACCCCAAGGTCTTTCAGAGCAGTCAAAGCTTTATCTCC
CGAAGAGAACGAGGCGTTGTCTAAGATTACGAATGATGAGGAAACATTGC
GATCTCTGGAAGCTATGACGGGCACCAGCGGAAAGATTGTTGCCACATTC
AACAAACTGCTCCGCATTCCGTTCTTGGACAGTCTGCATGTAAGTGCAGC
TGCAAACACAGGATCTGAAAAGGATGGATCACAGGAAGAACGCGATGAAG
AAAGCTCGAACATTGACTTGGAAACTCTCACCCTTAATTTCCTACAGCGA
TATCAGAAGTTACAAGCCGACACAGTTCCAATCGCTCGCAATCTATATTC
GTATGCCACTCTTCAACAAAGATTGATTCCAATGCTCAAATCATCGCTTT
CGATCGAGAATTATGTCAAAGTTAACCTTAGTCTGATCGAAAAACGTCGT
GCTGAGGCACAGCGAGTGCATGCTGAGCATAACAAGTTTCAGCAAGATTG
GAATACGGCTGTTTTGTTAGTCCAGCGTGCAATCGCTGAACAGGAAGCAA
ATATTGACGGACTTAAAGCTACAATAGAAGAACTCGCCAAGCAGAAGAAA
AGAAGAACTCTCGGTGCCATCTTCACTTTTATTGGAGCTGCTCTGTTTAC
CGTTGCTGCAGCCTTCACAGGTGGTATGCTTTTCGTGTTGTGCGGGGCCG
CTGCCATCGGAATGGTTGTGACTGGCAGTGTTCTTGCGTCTCAAGCGGCC
GAGCTACAGAGAGGCATTGAAGGATACAAAACGGCTCTACGAACCGCAGA
GGAAACGCTGTCGCACTTCAGGTTTGTTTTACCGATTATGCAAGAGGTGC
GTGATCAGCTGAAATCCGTGACACTTATATGGAACGATATAACGAACAAC
CTCACAGACTTGAGTACTGGAACTGAAGCTTGGGAAATCCTTGCCTTCAC
CTTGCAAGGAGATGAATGGGATCCATTTATGAATGCCGCATTGGAAAACT
GGAAAAACATTGAGACGAGCGTCCTCGCCTATGTCGCTCAAGTCTCGGAT
GTGAATCCTACTATCGAGTAA
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protein sequence of Gvermi12477.t1

>Gvermi12477.t1 ID=Gvermi12477.t1|Name=Gvermi12477.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=707bp
MVEENVTADFRTLLPPSETVELLQGSSNSNKKTQATFNEILRFPFLQEIR
AGSLKNDAVKGGTPVLHIVSDGLTYFTSSQITDVNIVRKLSGFAATIPRL
AAVLPRKRLAEVLIGMVTRYAEFANKKSVESKKFYSNFGTAISDTSDAID
ALDGDLDVLRKEIEQLEKSGDDSEFSFFSFIQTSAGAKLLDITRRRIGKY
LTTEVNSEQSLISSLSLVLSVSPDLLTAIFRGSENEPEPDIEKYAELLKD
FQTRLRNVRLLMTALSQNLRNVLRQSVSLMSTWYLILQQLNDLNTTSSPD
EPFAEEEVVVISDAWKSLKKDADEFTASVADVSVTAVTSVLEKNTEVVRR
SLAFTPRSFRAVKALSPEENEALSKITNDEETLRSLEAMTGTSGKIVATF
NKLLRIPFLDSLHVSAAANTGSEKDGSQEERDEESSNIDLETLTLNFLQR
YQKLQADTVPIARNLYSYATLQQRLIPMLKSSLSIENYVKVNLSLIEKRR
AEAQRVHAEHNKFQQDWNTAVLLVQRAIAEQEANIDGLKATIEELAKQKK
RRTLGAIFTFIGAALFTVAAAFTGGMLFVLCGAAAIGMVVTGSVLASQAA
ELQRGIEGYKTALRTAEETLSHFRFVLPIMQEVRDQLKSVTLIWNDITNN
LTDLSTGTEAWEILAFTLQGDEWDPFMNAALENWKNIETSVLAYVAQVSD
VNPTIE*
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mRNA from alignment at ScGOVlb_3404:5149053..5151173-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12477.t1 ID=Gvermi12477.t1|Name=Gvermi12477.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2121bp|location=Sequence derived from alignment at ScGOVlb_3404:5149053..5151173- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTGAAGAGAACGTCACTGCCGATTTTCGTACCCTTCTGCCCCCATC
GGAAACTGTTGAGCTTCTGCAAGGCTCTTCAAACTCCAACAAGAAGACTC
AGGCCACTTTCAATGAAATTCTCCGGTTTCCATTTTTGCAAGAGATTCGC
GCTGGATCCTTGAAGAATGATGCCGTCAAGGGTGGCACGCCAGTTCTCCA
CATTGTCTCAGACGGCCTCACTTACTTCACGTCCTCACAGATTACTGACG
TCAATATTGTCCGAAAGCTTTCCGGTTTTGCCGCCACCATTCCGCGCCTT
GCTGCTGTTCTCCCGCGCAAACGCCTCGCTGAAGTTCTCATCGGTATGGT
CACCCGCTACGCTGAATTTGCCAATAAGAAATCTGTAGAATCTAAGAAAT
TCTACTCCAACTTTGGTACCGCCATCTCAGACACATCGGACGCAATTGAT
GCCTTAGATGGCGATCTCGATGTACTCAGAAAAGAAATCGAACAATTAGA
AAAGAGTGGGGACGATTCTGAGTTCAGTTTTTTCTCGTTCATCCAAACCA
GTGCCGGAGCCAAGTTGCTTGACATCACCCGTCGTCGTATCGGCAAATAT
CTTACTACGGAAGTCAACTCCGAGCAGTCTTTAATATCGTCTCTGTCCTT
GGTTTTGTCCGTCAGCCCAGACCTGCTGACGGCGATTTTCCGCGGATCCG
AAAACGAGCCCGAGCCCGACATCGAGAAATATGCTGAACTGCTAAAGGAT
TTTCAAACTCGTTTGCGAAACGTGCGCTTGTTAATGACAGCGCTCTCCCA
AAATTTGAGAAATGTGCTCCGTCAGTCCGTCTCACTGATGAGTACATGGT
ATCTCATCCTACAGCAGCTTAACGACCTCAACACGACCAGTTCACCGGAT
GAGCCGTTTGCTGAAGAAGAAGTCGTTGTCATATCCGACGCATGGAAGAG
CCTAAAAAAGGATGCTGATGAGTTCACGGCTTCCGTGGCGGATGTCTCAG
TTACAGCCGTAACCTCTGTACTGGAAAAGAACACTGAGGTTGTCCGACGT
TCACTTGCGTTTACCCCAAGGTCTTTCAGAGCAGTCAAAGCTTTATCTCC
CGAAGAGAACGAGGCGTTGTCTAAGATTACGAATGATGAGGAAACATTGC
GATCTCTGGAAGCTATGACGGGCACCAGCGGAAAGATTGTTGCCACATTC
AACAAACTGCTCCGCATTCCGTTCTTGGACAGTCTGCATGTAAGTGCAGC
TGCAAACACAGGATCTGAAAAGGATGGATCACAGGAAGAACGCGATGAAG
AAAGCTCGAACATTGACTTGGAAACTCTCACCCTTAATTTCCTACAGCGA
TATCAGAAGTTACAAGCCGACACAGTTCCAATCGCTCGCAATCTATATTC
GTATGCCACTCTTCAACAAAGATTGATTCCAATGCTCAAATCATCGCTTT
CGATCGAGAATTATGTCAAAGTTAACCTTAGTCTGATCGAAAAACGTCGT
GCTGAGGCACAGCGAGTGCATGCTGAGCATAACAAGTTTCAGCAAGATTG
GAATACGGCTGTTTTGTTAGTCCAGCGTGCAATCGCTGAACAGGAAGCAA
ATATTGACGGACTTAAAGCTACAATAGAAGAACTCGCCAAGCAGAAGAAA
AGAAGAACTCTCGGTGCCATCTTCACTTTTATTGGAGCTGCTCTGTTTAC
CGTTGCTGCAGCCTTCACAGGTGGTATGCTTTTCGTGTTGTGCGGGGCCG
CTGCCATCGGAATGGTTGTGACTGGCAGTGTTCTTGCGTCTCAAGCGGCC
GAGCTACAGAGAGGCATTGAAGGATACAAAACGGCTCTACGAACCGCAGA
GGAAACGCTGTCGCACTTCAGGTTTGTTTTACCGATTATGCAAGAGGTGC
GTGATCAGCTGAAATCCGTGACACTTATATGGAACGATATAACGAACAAC
CTCACAGACTTGAGTACTGGAACTGAAGCTTGGGAAATCCTTGCCTTCAC
CTTGCAAGGAGATGAATGGGATCCATTTATGAATGCCGCATTGGAAAACT
GGAAAAACATTGAGACGAGCGTCCTCGCCTATGTCGCTCAAGTCTCGGAT
GTGAATCCTACTATCGAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:5149053..5151173-

>Gvermi12477.t1 ID=Gvermi12477.t1|Name=Gvermi12477.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2121bp|location=Sequence derived from alignment at ScGOVlb_3404:5149053..5151173- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTGAAGAGAACGTCACTGCCGATTTTCGTACCCTTCTGCCCCCATC
GGAAACTGTTGAGCTTCTGCAAGGCTCTTCAAACTCCAACAAGAAGACTC
AGGCCACTTTCAATGAAATTCTCCGGTTTCCATTTTTGCAAGAGATTCGC
GCTGGATCCTTGAAGAATGATGCCGTCAAGGGTGGCACGCCAGTTCTCCA
CATTGTCTCAGACGGCCTCACTTACTTCACGTCCTCACAGATTACTGACG
TCAATATTGTCCGAAAGCTTTCCGGTTTTGCCGCCACCATTCCGCGCCTT
GCTGCTGTTCTCCCGCGCAAACGCCTCGCTGAAGTTCTCATCGGTATGGT
CACCCGCTACGCTGAATTTGCCAATAAGAAATCTGTAGAATCTAAGAAAT
TCTACTCCAACTTTGGTACCGCCATCTCAGACACATCGGACGCAATTGAT
GCCTTAGATGGCGATCTCGATGTACTCAGAAAAGAAATCGAACAATTAGA
AAAGAGTGGGGACGATTCTGAGTTCAGTTTTTTCTCGTTCATCCAAACCA
GTGCCGGAGCCAAGTTGCTTGACATCACCCGTCGTCGTATCGGCAAATAT
CTTACTACGGAAGTCAACTCCGAGCAGTCTTTAATATCGTCTCTGTCCTT
GGTTTTGTCCGTCAGCCCAGACCTGCTGACGGCGATTTTCCGCGGATCCG
AAAACGAGCCCGAGCCCGACATCGAGAAATATGCTGAACTGCTAAAGGAT
TTTCAAACTCGTTTGCGAAACGTGCGCTTGTTAATGACAGCGCTCTCCCA
AAATTTGAGAAATGTGCTCCGTCAGTCCGTCTCACTGATGAGTACATGGT
ATCTCATCCTACAGCAGCTTAACGACCTCAACACGACCAGTTCACCGGAT
GAGCCGTTTGCTGAAGAAGAAGTCGTTGTCATATCCGACGCATGGAAGAG
CCTAAAAAAGGATGCTGATGAGTTCACGGCTTCCGTGGCGGATGTCTCAG
TTACAGCCGTAACCTCTGTACTGGAAAAGAACACTGAGGTTGTCCGACGT
TCACTTGCGTTTACCCCAAGGTCTTTCAGAGCAGTCAAAGCTTTATCTCC
CGAAGAGAACGAGGCGTTGTCTAAGATTACGAATGATGAGGAAACATTGC
GATCTCTGGAAGCTATGACGGGCACCAGCGGAAAGATTGTTGCCACATTC
AACAAACTGCTCCGCATTCCGTTCTTGGACAGTCTGCATGTAAGTGCAGC
TGCAAACACAGGATCTGAAAAGGATGGATCACAGGAAGAACGCGATGAAG
AAAGCTCGAACATTGACTTGGAAACTCTCACCCTTAATTTCCTACAGCGA
TATCAGAAGTTACAAGCCGACACAGTTCCAATCGCTCGCAATCTATATTC
GTATGCCACTCTTCAACAAAGATTGATTCCAATGCTCAAATCATCGCTTT
CGATCGAGAATTATGTCAAAGTTAACCTTAGTCTGATCGAAAAACGTCGT
GCTGAGGCACAGCGAGTGCATGCTGAGCATAACAAGTTTCAGCAAGATTG
GAATACGGCTGTTTTGTTAGTCCAGCGTGCAATCGCTGAACAGGAAGCAA
ATATTGACGGACTTAAAGCTACAATAGAAGAACTCGCCAAGCAGAAGAAA
AGAAGAACTCTCGGTGCCATCTTCACTTTTATTGGAGCTGCTCTGTTTAC
CGTTGCTGCAGCCTTCACAGGTGGTATGCTTTTCGTGTTGTGCGGGGCCG
CTGCCATCGGAATGGTTGTGACTGGCAGTGTTCTTGCGTCTCAAGCGGCC
GAGCTACAGAGAGGCATTGAAGGATACAAAACGGCTCTACGAACCGCAGA
GGAAACGCTGTCGCACTTCAGGTTTGTTTTACCGATTATGCAAGAGGTGC
GTGATCAGCTGAAATCCGTGACACTTATATGGAACGATATAACGAACAAC
CTCACAGACTTGAGTACTGGAACTGAAGCTTGGGAAATCCTTGCCTTCAC
CTTGCAAGGAGATGAATGGGATCCATTTATGAATGCCGCATTGGAAAACT
GGAAAAACATTGAGACGAGCGTCCTCGCCTATGTCGCTCAAGTCTCGGAT
GTGAATCCTACTATCGAGTAA
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