Gvermi12474.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12474.t1
Unique NameGvermi12474.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length451
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4996454..4997806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0233530
PFAMsWD40
Max annot lvl554915|Amoebozoa
KEGG koko:K12862
KEGG Pathwayko03040,map03040
KEGG ModuleM00353,M00355
Evalue8.5e-54
EggNOG OGsKOG0285@1|root,KOG0285@2759|Eukaryota,3X88V@554915|Amoebozoa
DescriptionPre-mRNA-splicing factor PRP46
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12474Gvermi12474Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4996454..4997806 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12474.t1.stop1Gvermi12474.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4996454..4996456 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12474.t1.CDS1Gvermi12474.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4996454..4997806 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12474.t1.exon1Gvermi12474.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4996454..4997806 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12474.t1.start1Gvermi12474.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4997804..4997806 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12474.t1Gvermi12474.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4996454..4997806 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12474.t1 ID=Gvermi12474.t1|Name=Gvermi12474.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=451bp
MTQSESLLKRASELVSVNECESRELYGDRKLGGFSEDDSVLKLRQGLRSE
YNVFHPRKRPRSFTPLDTHKERQGSEKHETQPTKALTVSKSDDQQRDMAP
SLRGPDRILQMVKNREQAVEKERPTWHPPWRSYRVISGHLGWVRCVAFDA
SNAWFATGSADRTVKIWDSATGRLKLTLTGHVSTVRGIVISERHPYMFTV
GEDKMVKCWDLEQNKVIRNYHGHLSGVYCVSLHPVLDVLVTGGRDSTVRV
WDVRTRAQVFVMGGHRDTVNAVLTQPVDPQVISASVDSTIRTWDLAAGKC
FATLTNHKKGVRALAAHPREFSFASASADNIKTWALPDGTFMRNLNGAHG
KKLVNALAINEDGVLASGGDDGTVAFWDYGSAHCFQKARGVVQPGSLECE
NGIYGLAFDKSGSRLVTCETDKTIRMWREVEDATEETHPIVWEPRKRDRY
*
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spliced messenger RNA

>Gvermi12474.t1 ID=Gvermi12474.t1|Name=Gvermi12474.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1353bp|location=Sequence derived from alignment at ScGOVlb_3404:4996454..4997806- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCAATCCGAATCGCTGTTGAAACGAGCGAGTGAATTAGTCTCCGT
AAATGAATGTGAATCGCGAGAGCTGTATGGGGATAGGAAGCTTGGAGGCT
TTTCCGAAGATGACAGTGTCCTAAAACTGCGTCAGGGACTCCGCTCCGAG
TACAATGTTTTTCACCCTAGAAAAAGGCCAAGAAGCTTTACACCGCTCGA
CACACACAAAGAACGGCAGGGTTCTGAAAAGCATGAAACGCAACCAACAA
AAGCGTTGACCGTCTCGAAAAGCGATGACCAACAGCGTGACATGGCCCCT
TCTTTGCGAGGTCCGGATCGCATCTTGCAAATGGTTAAGAACCGTGAACA
AGCTGTAGAAAAGGAGAGGCCAACATGGCATCCCCCTTGGCGATCGTATA
GAGTTATTAGCGGACATCTTGGATGGGTGCGGTGCGTCGCTTTTGACGCA
AGCAACGCCTGGTTTGCTACGGGTTCTGCGGATCGCACCGTCAAGATATG
GGACTCGGCAACAGGGCGACTCAAACTAACATTAACTGGTCATGTCTCAA
CAGTTCGAGGCATCGTAATATCTGAGCGGCACCCGTACATGTTTACGGTG
GGGGAAGATAAGATGGTGAAGTGCTGGGACTTGGAACAGAACAAGGTGAT
TCGTAATTATCATGGTCACTTGTCTGGTGTTTATTGTGTGTCTTTACATC
CTGTTCTTGATGTTCTGGTCACAGGAGGTCGGGATTCTACAGTGCGAGTT
TGGGACGTGCGAACAAGAGCACAAGTTTTCGTCATGGGGGGCCATAGAGA
TACGGTCAACGCGGTACTCACCCAGCCGGTAGATCCTCAGGTAATTTCCG
CAAGCGTAGATTCCACAATCCGAACTTGGGATCTAGCGGCTGGAAAGTGT
TTTGCGACGCTGACGAATCACAAAAAGGGTGTGCGAGCTTTGGCCGCCCA
TCCTCGCGAGTTCTCGTTTGCATCTGCATCAGCTGACAACATCAAGACAT
GGGCTCTGCCTGACGGAACATTTATGCGCAATTTAAACGGTGCGCATGGA
AAGAAACTCGTGAACGCCTTAGCAATTAATGAAGATGGAGTTCTGGCGAG
CGGCGGAGACGATGGCACGGTGGCTTTCTGGGACTACGGCTCGGCACACT
GCTTCCAAAAAGCACGGGGAGTAGTTCAACCTGGAAGTCTTGAATGTGAG
AATGGGATTTATGGACTTGCTTTCGATAAAAGCGGAAGCCGTTTAGTAAC
ATGTGAAACGGATAAAACTATTCGCATGTGGCGGGAGGTCGAGGACGCAA
CAGAAGAAACGCATCCAATTGTTTGGGAACCCAGAAAGCGGGATCGGTAC
TGA
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protein sequence of Gvermi12474.t1

>Gvermi12474.t1 ID=Gvermi12474.t1|Name=Gvermi12474.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=451bp
MTQSESLLKRASELVSVNECESRELYGDRKLGGFSEDDSVLKLRQGLRSE
YNVFHPRKRPRSFTPLDTHKERQGSEKHETQPTKALTVSKSDDQQRDMAP
SLRGPDRILQMVKNREQAVEKERPTWHPPWRSYRVISGHLGWVRCVAFDA
SNAWFATGSADRTVKIWDSATGRLKLTLTGHVSTVRGIVISERHPYMFTV
GEDKMVKCWDLEQNKVIRNYHGHLSGVYCVSLHPVLDVLVTGGRDSTVRV
WDVRTRAQVFVMGGHRDTVNAVLTQPVDPQVISASVDSTIRTWDLAAGKC
FATLTNHKKGVRALAAHPREFSFASASADNIKTWALPDGTFMRNLNGAHG
KKLVNALAINEDGVLASGGDDGTVAFWDYGSAHCFQKARGVVQPGSLECE
NGIYGLAFDKSGSRLVTCETDKTIRMWREVEDATEETHPIVWEPRKRDRY
*
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mRNA from alignment at ScGOVlb_3404:4996454..4997806-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12474.t1 ID=Gvermi12474.t1|Name=Gvermi12474.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1353bp|location=Sequence derived from alignment at ScGOVlb_3404:4996454..4997806- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTCAATCCGAATCGCTGTTGAAACGAGCGAGTGAATTAGTCTCCGT
AAATGAATGTGAATCGCGAGAGCTGTATGGGGATAGGAAGCTTGGAGGCT
TTTCCGAAGATGACAGTGTCCTAAAACTGCGTCAGGGACTCCGCTCCGAG
TACAATGTTTTTCACCCTAGAAAAAGGCCAAGAAGCTTTACACCGCTCGA
CACACACAAAGAACGGCAGGGTTCTGAAAAGCATGAAACGCAACCAACAA
AAGCGTTGACCGTCTCGAAAAGCGATGACCAACAGCGTGACATGGCCCCT
TCTTTGCGAGGTCCGGATCGCATCTTGCAAATGGTTAAGAACCGTGAACA
AGCTGTAGAAAAGGAGAGGCCAACATGGCATCCCCCTTGGCGATCGTATA
GAGTTATTAGCGGACATCTTGGATGGGTGCGGTGCGTCGCTTTTGACGCA
AGCAACGCCTGGTTTGCTACGGGTTCTGCGGATCGCACCGTCAAGATATG
GGACTCGGCAACAGGGCGACTCAAACTAACATTAACTGGTCATGTCTCAA
CAGTTCGAGGCATCGTAATATCTGAGCGGCACCCGTACATGTTTACGGTG
GGGGAAGATAAGATGGTGAAGTGCTGGGACTTGGAACAGAACAAGGTGAT
TCGTAATTATCATGGTCACTTGTCTGGTGTTTATTGTGTGTCTTTACATC
CTGTTCTTGATGTTCTGGTCACAGGAGGTCGGGATTCTACAGTGCGAGTT
TGGGACGTGCGAACAAGAGCACAAGTTTTCGTCATGGGGGGCCATAGAGA
TACGGTCAACGCGGTACTCACCCAGCCGGTAGATCCTCAGGTAATTTCCG
CAAGCGTAGATTCCACAATCCGAACTTGGGATCTAGCGGCTGGAAAGTGT
TTTGCGACGCTGACGAATCACAAAAAGGGTGTGCGAGCTTTGGCCGCCCA
TCCTCGCGAGTTCTCGTTTGCATCTGCATCAGCTGACAACATCAAGACAT
GGGCTCTGCCTGACGGAACATTTATGCGCAATTTAAACGGTGCGCATGGA
AAGAAACTCGTGAACGCCTTAGCAATTAATGAAGATGGAGTTCTGGCGAG
CGGCGGAGACGATGGCACGGTGGCTTTCTGGGACTACGGCTCGGCACACT
GCTTCCAAAAAGCACGGGGAGTAGTTCAACCTGGAAGTCTTGAATGTGAG
AATGGGATTTATGGACTTGCTTTCGATAAAAGCGGAAGCCGTTTAGTAAC
ATGTGAAACGGATAAAACTATTCGCATGTGGCGGGAGGTCGAGGACGCAA
CAGAAGAAACGCATCCAATTGTTTGGGAACCCAGAAAGCGGGATCGGTAC
TGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4996454..4997806-

>Gvermi12474.t1 ID=Gvermi12474.t1|Name=Gvermi12474.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1353bp|location=Sequence derived from alignment at ScGOVlb_3404:4996454..4997806- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTCAATCCGAATCGCTGTTGAAACGAGCGAGTGAATTAGTCTCCGT
AAATGAATGTGAATCGCGAGAGCTGTATGGGGATAGGAAGCTTGGAGGCT
TTTCCGAAGATGACAGTGTCCTAAAACTGCGTCAGGGACTCCGCTCCGAG
TACAATGTTTTTCACCCTAGAAAAAGGCCAAGAAGCTTTACACCGCTCGA
CACACACAAAGAACGGCAGGGTTCTGAAAAGCATGAAACGCAACCAACAA
AAGCGTTGACCGTCTCGAAAAGCGATGACCAACAGCGTGACATGGCCCCT
TCTTTGCGAGGTCCGGATCGCATCTTGCAAATGGTTAAGAACCGTGAACA
AGCTGTAGAAAAGGAGAGGCCAACATGGCATCCCCCTTGGCGATCGTATA
GAGTTATTAGCGGACATCTTGGATGGGTGCGGTGCGTCGCTTTTGACGCA
AGCAACGCCTGGTTTGCTACGGGTTCTGCGGATCGCACCGTCAAGATATG
GGACTCGGCAACAGGGCGACTCAAACTAACATTAACTGGTCATGTCTCAA
CAGTTCGAGGCATCGTAATATCTGAGCGGCACCCGTACATGTTTACGGTG
GGGGAAGATAAGATGGTGAAGTGCTGGGACTTGGAACAGAACAAGGTGAT
TCGTAATTATCATGGTCACTTGTCTGGTGTTTATTGTGTGTCTTTACATC
CTGTTCTTGATGTTCTGGTCACAGGAGGTCGGGATTCTACAGTGCGAGTT
TGGGACGTGCGAACAAGAGCACAAGTTTTCGTCATGGGGGGCCATAGAGA
TACGGTCAACGCGGTACTCACCCAGCCGGTAGATCCTCAGGTAATTTCCG
CAAGCGTAGATTCCACAATCCGAACTTGGGATCTAGCGGCTGGAAAGTGT
TTTGCGACGCTGACGAATCACAAAAAGGGTGTGCGAGCTTTGGCCGCCCA
TCCTCGCGAGTTCTCGTTTGCATCTGCATCAGCTGACAACATCAAGACAT
GGGCTCTGCCTGACGGAACATTTATGCGCAATTTAAACGGTGCGCATGGA
AAGAAACTCGTGAACGCCTTAGCAATTAATGAAGATGGAGTTCTGGCGAG
CGGCGGAGACGATGGCACGGTGGCTTTCTGGGACTACGGCTCGGCACACT
GCTTCCAAAAAGCACGGGGAGTAGTTCAACCTGGAAGTCTTGAATGTGAG
AATGGGATTTATGGACTTGCTTTCGATAAAAGCGGAAGCCGTTTAGTAAC
ATGTGAAACGGATAAAACTATTCGCATGTGGCGGGAGGTCGAGGACGCAA
CAGAAGAAACGCATCCAATTGTTTGGGAACCCAGAAAGCGGGATCGGTAC
TGA
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