Gvermi12464.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12464.t1
Unique Name	Gvermi12464.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	686

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4936575..4938761 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12464	Gvermi12464	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4936575..4938761 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12464.t1	Gvermi12464.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4936575..4938761 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12464.t1.start1	Gvermi12464.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4936575..4936577 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12464.t1.CDS1	Gvermi12464.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4936575..4937753 +
Gvermi12464.t1.CDS2	Gvermi12464.t1.CDS2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4937883..4938761 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12464.t1.exon1	Gvermi12464.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4936575..4937753 +
Gvermi12464.t1.exon2	Gvermi12464.t1.exon2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4937883..4938761 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12464.t1.intron1	Gvermi12464.t1.intron1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	intron	ScGOVlb_3404 4937754..4937882 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12464.t1.stop1	Gvermi12464.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4938759..4938761 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4936575..4938761+
coding sequence from alignment at ScGOVlb_3404:4936575..4938761+

mRNA sequence

>Gvermi12464.t1 ID=Gvermi12464.t1|Name=Gvermi12464.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=686bp
MRSKQNKQPPPSTVAIPSEENLPFQLGDLVLCRYSTYPYWPATVDQTHQK
ERHGQYVCMHDTRAHHQTLAFWCTFSNEDTGGWVRADRMVLFHPSLLHYV
RVRRNHNWYGAQQSAIEAALKAFHTIHKGSTPPPEPQPPADMLTRSRQSN
EHDLVSDDDEPEEAHADKAKPPPDDDPMDLGSESSDDNRPTAKTATTRRR
RSSTSAKSPRAAAVPKTPPRKKRKTITPRPAPNPRKRPKTAEQQLEAQLL
DHAESEQVAALKTRISEMQANLEKLTSSLRRKEKALSDLRSTGNVVTFAP
VKQDTVPIESMPKAFSGPVLSSDEFEHRVNAMRDLFDKLDRAAKVAHEKH
QELSAEQDKIRKHYASLLEGVSDAQGQVVTHQKELADLLRGVLKQVVDYV
HSNPHVADEEKKGKTPSAESKENGSAKAFVASKEGSGKGDISPKRTKGPA
GNGTTEKEDAEDTDKEETGEREDSPANEESKAEDEMDVDSVAQKEQNAMA
ESPKKDVKLEESPPTKKAEAGERAKEPKKNTETEVKVSKQAKEEKIDTEA
GDSAAAAKPTWKQTRGSIAEKKPVQFLAPKLKKREGERETRAVKEPEGSV
DKKRAPKVGLKKEDKEAVKGEDSVADGGQKVVADCEKEDGTVKGVSVKVE
TDETGGVTMEVKRETAADEAKKSGGAKKEGTKVES*

spliced messenger RNA

>Gvermi12464.t1 ID=Gvermi12464.t1|Name=Gvermi12464.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2058bp|location=Sequence derived from alignment at ScGOVlb_3404:4936575..4938761+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTTCCAAGCAGAACAAGCAGCCGCCGCCTTCCACCGTGGCCATCCC
CTCCGAGGAAAACCTTCCCTTCCAGCTTGGCGACCTCGTCTTGTGCCGCT
ATTCCACCTACCCCTACTGGCCCGCCACCGTCGACCAAACCCATCAGAAA
GAGCGCCACGGCCAGTACGTGTGCATGCACGACACCCGTGCCCACCACCA
AACCTTAGCCTTCTGGTGCACCTTTTCCAACGAGGACACTGGCGGCTGGG
TTCGTGCCGATCGCATGGTTCTCTTCCACCCCAGTCTGCTGCACTACGTG
CGCGTTCGCCGAAACCACAACTGGTACGGCGCCCAGCAGTCCGCCATCGA
AGCCGCCCTCAAGGCCTTCCACACCATCCACAAAGGATCCACGCCGCCGC
CCGAGCCGCAGCCCCCGGCGGACATGCTCACCCGTTCGCGCCAGTCAAAC
GAGCACGATCTGGTGAGCGACGACGACGAGCCGGAGGAAGCCCACGCGGA
CAAGGCCAAACCGCCGCCCGACGACGACCCCATGGACCTCGGCAGCGAAA
GTTCGGACGACAACCGCCCCACGGCCAAAACCGCCACAACGCGCCGCCGC
CGCTCCTCCACCAGCGCGAAGAGTCCGCGCGCCGCCGCCGTCCCCAAAAC
ACCCCCCCGCAAGAAACGCAAGACCATCACACCGCGCCCCGCCCCAAACC
CTCGCAAGCGCCCCAAAACCGCCGAGCAGCAACTCGAGGCCCAACTGCTC
GACCACGCAGAGTCCGAGCAAGTGGCCGCCCTCAAAACCAGGATTAGTGA
GATGCAGGCAAATCTTGAGAAGCTCACCTCCAGCTTGCGTCGGAAGGAAA
AAGCTCTCTCGGACTTGCGCTCCACCGGCAATGTGGTCACCTTCGCGCCG
GTCAAACAAGACACGGTGCCCATCGAATCCATGCCCAAGGCTTTCAGCGG
CCCTGTGCTCTCGTCTGATGAGTTTGAGCACCGAGTCAACGCCATGAGGG
ATCTTTTTGACAAGTTGGATCGCGCAGCAAAAGTGGCACATGAAAAGCAT
CAGGAGCTGTCGGCAGAGCAGGACAAAATCCGCAAGCACTATGCTTCGTT
GCTGGAGGGTGTGTCGGATGCGCAGGGCCAGGTTGTGACGCATCAGAAGG
AGTTGGCAGACTTACTGCGTGGTGTCCTGAAGCAAGTGGTGGACTATGTG
CACAGCAACCCTCACGTTGCCGACGAAGAGAAGAAGGGAAAGACGCCATC
TGCTGAGAGCAAGGAGAATGGCTCGGCGAAGGCGTTTGTAGCTTCCAAGG
AAGGCAGTGGCAAAGGGGATATCTCTCCGAAACGCACCAAGGGCCCTGCT
GGCAACGGCACCACAGAGAAGGAGGATGCTGAAGACACCGACAAGGAAGA
AACGGGAGAACGCGAGGACAGTCCTGCCAACGAAGAATCGAAAGCCGAAG
ATGAGATGGATGTGGATAGCGTTGCTCAAAAGGAGCAAAACGCTATGGCT
GAGTCGCCCAAGAAAGACGTGAAGCTTGAGGAAAGTCCCCCCACCAAGAA
GGCAGAAGCAGGTGAGAGGGCGAAAGAGCCGAAGAAAAACACAGAGACCG
AGGTGAAAGTCTCGAAACAAGCCAAGGAGGAAAAAATAGACACTGAGGCG
GGCGATAGTGCTGCAGCGGCGAAGCCTACATGGAAGCAAACCCGGGGATC
AATAGCCGAGAAGAAACCAGTCCAGTTTCTTGCTCCGAAGCTCAAGAAAA
GGGAAGGAGAGCGAGAAACACGGGCAGTGAAAGAGCCCGAAGGCAGTGTC
GACAAGAAGCGTGCGCCAAAGGTCGGTTTGAAGAAGGAAGACAAGGAAGC
TGTTAAAGGGGAGGATTCGGTGGCAGATGGGGGTCAGAAAGTGGTTGCAG
ATTGCGAGAAGGAGGATGGGACGGTAAAAGGCGTGTCGGTCAAAGTGGAG
ACGGATGAGACTGGGGGTGTTACGATGGAAGTGAAGCGCGAAACGGCAGC
CGATGAAGCCAAAAAGAGCGGTGGGGCAAAGAAGGAAGGCACAAAAGTCG
AGAGCTAA

protein sequence of Gvermi12464.t1

>Gvermi12464.t1 ID=Gvermi12464.t1|Name=Gvermi12464.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=686bp
MRSKQNKQPPPSTVAIPSEENLPFQLGDLVLCRYSTYPYWPATVDQTHQK
ERHGQYVCMHDTRAHHQTLAFWCTFSNEDTGGWVRADRMVLFHPSLLHYV
RVRRNHNWYGAQQSAIEAALKAFHTIHKGSTPPPEPQPPADMLTRSRQSN
EHDLVSDDDEPEEAHADKAKPPPDDDPMDLGSESSDDNRPTAKTATTRRR
RSSTSAKSPRAAAVPKTPPRKKRKTITPRPAPNPRKRPKTAEQQLEAQLL
DHAESEQVAALKTRISEMQANLEKLTSSLRRKEKALSDLRSTGNVVTFAP
VKQDTVPIESMPKAFSGPVLSSDEFEHRVNAMRDLFDKLDRAAKVAHEKH
QELSAEQDKIRKHYASLLEGVSDAQGQVVTHQKELADLLRGVLKQVVDYV
HSNPHVADEEKKGKTPSAESKENGSAKAFVASKEGSGKGDISPKRTKGPA
GNGTTEKEDAEDTDKEETGEREDSPANEESKAEDEMDVDSVAQKEQNAMA
ESPKKDVKLEESPPTKKAEAGERAKEPKKNTETEVKVSKQAKEEKIDTEA
GDSAAAAKPTWKQTRGSIAEKKPVQFLAPKLKKREGERETRAVKEPEGSV
DKKRAPKVGLKKEDKEAVKGEDSVADGGQKVVADCEKEDGTVKGVSVKVE
TDETGGVTMEVKRETAADEAKKSGGAKKEGTKVES*

mRNA from alignment at ScGOVlb_3404:4936575..4938761+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12464.t1 ID=Gvermi12464.t1|Name=Gvermi12464.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2187bp|location=Sequence derived from alignment at ScGOVlb_3404:4936575..4938761+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTTCCAAGCAGAACAAGCAGCCGCCGCCTTCCACCGTGGCCATCCC
CTCCGAGGAAAACCTTCCCTTCCAGCTTGGCGACCTCGTCTTGTGCCGCT
ATTCCACCTACCCCTACTGGCCCGCCACCGTCGACCAAACCCATCAGAAA
GAGCGCCACGGCCAGTACGTGTGCATGCACGACACCCGTGCCCACCACCA
AACCTTAGCCTTCTGGTGCACCTTTTCCAACGAGGACACTGGCGGCTGGG
TTCGTGCCGATCGCATGGTTCTCTTCCACCCCAGTCTGCTGCACTACGTG
CGCGTTCGCCGAAACCACAACTGGTACGGCGCCCAGCAGTCCGCCATCGA
AGCCGCCCTCAAGGCCTTCCACACCATCCACAAAGGATCCACGCCGCCGC
CCGAGCCGCAGCCCCCGGCGGACATGCTCACCCGTTCGCGCCAGTCAAAC
GAGCACGATCTGGTGAGCGACGACGACGAGCCGGAGGAAGCCCACGCGGA
CAAGGCCAAACCGCCGCCCGACGACGACCCCATGGACCTCGGCAGCGAAA
GTTCGGACGACAACCGCCCCACGGCCAAAACCGCCACAACGCGCCGCCGC
CGCTCCTCCACCAGCGCGAAGAGTCCGCGCGCCGCCGCCGTCCCCAAAAC
ACCCCCCCGCAAGAAACGCAAGACCATCACACCGCGCCCCGCCCCAAACC
CTCGCAAGCGCCCCAAAACCGCCGAGCAGCAACTCGAGGCCCAACTGCTC
GACCACGCAGAGTCCGAGCAAGTGGCCGCCCTCAAAACCAGGATTAGTGA
GATGCAGGCAAATCTTGAGAAGCTCACCTCCAGCTTGCGTCGGAAGGAAA
AAGCTCTCTCGGACTTGCGCTCCACCGGCAATGTGGTCACCTTCGCGCCG
GTCAAACAAGACACGGTGCCCATCGAATCCATGCCCAAGGCTTTCAGCGG
CCCTGTGCTCTCGTCTGATGAGTTTGAGCACCGAGTCAACGCCATGAGGG
ATCTTTTTGACAAGTTGGATCGCGCAGCAAAAGTGGCACATGAAAAGCAT
CAGGAGCTGTCGGCAGAGCAGGACAAAATCCGCAAGCACTATGCTTCGTT
GCTGGAGGGTGTGTCGGATGCGCAGGGCCAGGTTGTGACGCATCAGAAGG
AGTTGGCAGACTTACTGCGTGGTGTCCTGGTAAGTCAAGTGGCAGTCATA
GACCTGCGCAAGCACCAAGCGGGCAACCTGATTAAAACGATGAGCAAGAT
GTGCAAGGACATGCCTAACGTGTACGCCTTCTGTAATGCGTTGTACCGGG
GCTGGAAGAAGCAAGTGGTGGACTATGTGCACAGCAACCCTCACGTTGCC
GACGAAGAGAAGAAGGGAAAGACGCCATCTGCTGAGAGCAAGGAGAATGG
CTCGGCGAAGGCGTTTGTAGCTTCCAAGGAAGGCAGTGGCAAAGGGGATA
TCTCTCCGAAACGCACCAAGGGCCCTGCTGGCAACGGCACCACAGAGAAG
GAGGATGCTGAAGACACCGACAAGGAAGAAACGGGAGAACGCGAGGACAG
TCCTGCCAACGAAGAATCGAAAGCCGAAGATGAGATGGATGTGGATAGCG
TTGCTCAAAAGGAGCAAAACGCTATGGCTGAGTCGCCCAAGAAAGACGTG
AAGCTTGAGGAAAGTCCCCCCACCAAGAAGGCAGAAGCAGGTGAGAGGGC
GAAAGAGCCGAAGAAAAACACAGAGACCGAGGTGAAAGTCTCGAAACAAG
CCAAGGAGGAAAAAATAGACACTGAGGCGGGCGATAGTGCTGCAGCGGCG
AAGCCTACATGGAAGCAAACCCGGGGATCAATAGCCGAGAAGAAACCAGT
CCAGTTTCTTGCTCCGAAGCTCAAGAAAAGGGAAGGAGAGCGAGAAACAC
GGGCAGTGAAAGAGCCCGAAGGCAGTGTCGACAAGAAGCGTGCGCCAAAG
GTCGGTTTGAAGAAGGAAGACAAGGAAGCTGTTAAAGGGGAGGATTCGGT
GGCAGATGGGGGTCAGAAAGTGGTTGCAGATTGCGAGAAGGAGGATGGGA
CGGTAAAAGGCGTGTCGGTCAAAGTGGAGACGGATGAGACTGGGGGTGTT
ACGATGGAAGTGAAGCGCGAAACGGCAGCCGATGAAGCCAAAAAGAGCGG
TGGGGCAAAGAAGGAAGGCACAAAAGTCGAGAGCTAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:4936575..4938761+

>Gvermi12464.t1 ID=Gvermi12464.t1|Name=Gvermi12464.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2058bp|location=Sequence derived from alignment at ScGOVlb_3404:4936575..4938761+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTTCCAAGCAGAACAAGCAGCCGCCGCCTTCCACCGTGGCCATCCC
CTCCGAGGAAAACCTTCCCTTCCAGCTTGGCGACCTCGTCTTGTGCCGCT
ATTCCACCTACCCCTACTGGCCCGCCACCGTCGACCAAACCCATCAGAAA
GAGCGCCACGGCCAGTACGTGTGCATGCACGACACCCGTGCCCACCACCA
AACCTTAGCCTTCTGGTGCACCTTTTCCAACGAGGACACTGGCGGCTGGG
TTCGTGCCGATCGCATGGTTCTCTTCCACCCCAGTCTGCTGCACTACGTG
CGCGTTCGCCGAAACCACAACTGGTACGGCGCCCAGCAGTCCGCCATCGA
AGCCGCCCTCAAGGCCTTCCACACCATCCACAAAGGATCCACGCCGCCGC
CCGAGCCGCAGCCCCCGGCGGACATGCTCACCCGTTCGCGCCAGTCAAAC
GAGCACGATCTGGTGAGCGACGACGACGAGCCGGAGGAAGCCCACGCGGA
CAAGGCCAAACCGCCGCCCGACGACGACCCCATGGACCTCGGCAGCGAAA
GTTCGGACGACAACCGCCCCACGGCCAAAACCGCCACAACGCGCCGCCGC
CGCTCCTCCACCAGCGCGAAGAGTCCGCGCGCCGCCGCCGTCCCCAAAAC
ACCCCCCCGCAAGAAACGCAAGACCATCACACCGCGCCCCGCCCCAAACC
CTCGCAAGCGCCCCAAAACCGCCGAGCAGCAACTCGAGGCCCAACTGCTC
GACCACGCAGAGTCCGAGCAAGTGGCCGCCCTCAAAACCAGGATTAGTGA
GATGCAGGCAAATCTTGAGAAGCTCACCTCCAGCTTGCGTCGGAAGGAAA
AAGCTCTCTCGGACTTGCGCTCCACCGGCAATGTGGTCACCTTCGCGCCG
GTCAAACAAGACACGGTGCCCATCGAATCCATGCCCAAGGCTTTCAGCGG
CCCTGTGCTCTCGTCTGATGAGTTTGAGCACCGAGTCAACGCCATGAGGG
ATCTTTTTGACAAGTTGGATCGCGCAGCAAAAGTGGCACATGAAAAGCAT
CAGGAGCTGTCGGCAGAGCAGGACAAAATCCGCAAGCACTATGCTTCGTT
GCTGGAGGGTGTGTCGGATGCGCAGGGCCAGGTTGTGACGCATCAGAAGG
AGTTGGCAGACTTACTGCGTGGTGTCCTGAAGCAAGTGGTGGACTATGTG
CACAGCAACCCTCACGTTGCCGACGAAGAGAAGAAGGGAAAGACGCCATC
TGCTGAGAGCAAGGAGAATGGCTCGGCGAAGGCGTTTGTAGCTTCCAAGG
AAGGCAGTGGCAAAGGGGATATCTCTCCGAAACGCACCAAGGGCCCTGCT
GGCAACGGCACCACAGAGAAGGAGGATGCTGAAGACACCGACAAGGAAGA
AACGGGAGAACGCGAGGACAGTCCTGCCAACGAAGAATCGAAAGCCGAAG
ATGAGATGGATGTGGATAGCGTTGCTCAAAAGGAGCAAAACGCTATGGCT
GAGTCGCCCAAGAAAGACGTGAAGCTTGAGGAAAGTCCCCCCACCAAGAA
GGCAGAAGCAGGTGAGAGGGCGAAAGAGCCGAAGAAAAACACAGAGACCG
AGGTGAAAGTCTCGAAACAAGCCAAGGAGGAAAAAATAGACACTGAGGCG
GGCGATAGTGCTGCAGCGGCGAAGCCTACATGGAAGCAAACCCGGGGATC
AATAGCCGAGAAGAAACCAGTCCAGTTTCTTGCTCCGAAGCTCAAGAAAA
GGGAAGGAGAGCGAGAAACACGGGCAGTGAAAGAGCCCGAAGGCAGTGTC
GACAAGAAGCGTGCGCCAAAGGTCGGTTTGAAGAAGGAAGACAAGGAAGC
TGTTAAAGGGGAGGATTCGGTGGCAGATGGGGGTCAGAAAGTGGTTGCAG
ATTGCGAGAAGGAGGATGGGACGGTAAAAGGCGTGTCGGTCAAAGTGGAG
ACGGATGAGACTGGGGGTGTTACGATGGAAGTGAAGCGCGAAACGGCAGC
CGATGAAGCCAAAAAGAGCGGTGGGGCAAAGAAGGAAGGCACAAAAGTCG
AGAGCTAA