Gvermi12458.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12458.t1
Unique NameGvermi12458.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length841
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4921619..4924141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12458Gvermi12458Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4921619..4924141 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12458.t1.stop1Gvermi12458.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4921619..4921621 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12458.t1.CDS1Gvermi12458.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4921619..4924141 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12458.t1.exon1Gvermi12458.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4921619..4924141 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12458.t1.start1Gvermi12458.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4924139..4924141 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12458.t1Gvermi12458.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4921619..4924141 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12458.t1 ID=Gvermi12458.t1|Name=Gvermi12458.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=841bp
MNGHDAAAEKTFAARQFLSEFASGLHQSRDTHTNRPEHVPKPRKPKRRMR
PISVANVPAAHDNGLSSASHEGLTRLSLADQSLHNEIPKLFPSSESHLQK
SESPFLRKLQIAPSASENQVAQAPEKGTDSVPVPAGSFSPQISKHLKESS
DDQSSPTKPEQQQHGLLSEALQNRAITHATHVRTIANDPTLFLEALQTLY
QLTCISSSNSTEHDVSLLIYHTSRPTRLKYCQTVLSHLYDILRAYPVPIQ
RALNLSTTAADFPQPPTGAWVPFHPSHLSFRRLAEESSEVLPMSNRLKTN
LEVTWDALLDMLRTYCGHKQEAAGSVDDEKVVSVINSLHPCNIDIFASRF
VNLLSTHTVNVQQPTHIRLLDERFHAQSISFKKSKDIGVILHRVPQRVLE
AFGDVPAHKFFARFLTGIDSARLYTALVPRFLARVLEALSRASNANSNHE
FCDAVYEARLYARFLAVVMHSVNWSHSPFAISGSLSAPETFPPRKHKSGK
EETSDADNLHSNVPQAAHRKEQTERQQGKQREETRKKHSSGKTRHPNHVR
SIATAETPGLGSHALQWRAWHLTALWQSVFNIDELITSAVSSKQITAIVA
AAAVADVLLRFAAIDPVAKVSSWFREGLSAMKKLVVIDRGIDVQMPFVHI
LKIDLFSCDEISAQGSNWWENQGLDDNYVMKSDCSEWSAIGNMRLVQECC
TSLALFRRNLADCSDTKWQKTTPRRITPRMTGSTDALSPLQTHTGRETNS
TLGQKEEEKGNERDGREEVRKEFLSRLDPRLRELMHIVVSSRPDNEEDAQ
KKFLRVAKTLYSEVPVTVRAVAAHLCGDEVKSRLQSPLAE*
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spliced messenger RNA

>Gvermi12458.t1 ID=Gvermi12458.t1|Name=Gvermi12458.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2523bp|location=Sequence derived from alignment at ScGOVlb_3404:4921619..4924141- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGGGCACGACGCTGCCGCCGAAAAGACCTTCGCCGCCAGGCAATT
TCTATCCGAGTTCGCATCTGGACTACACCAAAGTCGAGACACACACACTA
ACCGACCCGAACATGTCCCAAAACCTCGCAAACCAAAACGTCGCATGCGC
CCAATTAGTGTGGCGAACGTTCCCGCAGCGCACGACAACGGCTTATCATC
CGCATCGCATGAAGGCCTTACCCGTTTATCACTGGCAGATCAATCGCTTC
ACAACGAGATCCCCAAGTTATTTCCTTCTTCCGAGAGCCATTTGCAAAAG
AGCGAAAGCCCGTTTTTACGAAAGCTTCAGATAGCCCCTAGTGCATCTGA
AAACCAAGTCGCTCAGGCTCCGGAGAAAGGGACTGATTCTGTCCCTGTGC
CCGCAGGCTCTTTTTCCCCGCAGATTTCAAAACATCTCAAGGAAAGTAGC
GATGACCAGAGCTCCCCAACAAAACCAGAACAGCAGCAACATGGCCTCTT
GTCTGAAGCCCTGCAGAATCGAGCAATCACTCACGCTACTCACGTTCGCA
CCATTGCAAATGATCCAACGCTCTTCCTAGAAGCACTGCAAACTCTGTAC
CAACTTACATGTATATCTTCATCTAACTCCACCGAGCACGATGTGTCTCT
GCTGATTTATCACACATCCAGACCCACACGTTTAAAATACTGCCAAACCG
TTCTCTCACATCTCTATGACATTTTGCGCGCTTACCCTGTTCCGATACAA
CGAGCTCTAAATCTAAGCACAACTGCTGCCGATTTTCCGCAACCACCCAC
CGGTGCTTGGGTTCCTTTTCATCCGTCCCATTTATCTTTCCGTCGTTTGG
CAGAAGAGTCTAGCGAAGTACTGCCCATGTCAAACCGTCTTAAAACCAAT
TTAGAAGTAACTTGGGACGCTCTCTTGGATATGCTTCGCACGTACTGCGG
ACATAAACAGGAAGCAGCCGGCTCAGTGGATGACGAAAAGGTTGTGAGCG
TGATAAACTCCCTTCATCCATGCAATATCGACATCTTCGCCTCCAGATTT
GTCAATCTATTGAGCACCCACACCGTCAATGTCCAGCAACCCACTCACAT
ACGCCTGCTCGATGAAAGGTTTCACGCCCAGTCAATATCTTTCAAGAAGT
CCAAAGACATCGGTGTCATCCTCCATCGCGTTCCGCAACGCGTGCTTGAA
GCATTTGGTGATGTTCCGGCCCACAAGTTCTTCGCTCGGTTCCTGACTGG
AATAGACTCGGCGCGTTTGTATACAGCTCTCGTGCCGAGATTTCTTGCGC
GCGTCTTGGAAGCCTTGAGCAGGGCATCCAATGCCAATTCAAACCATGAG
TTCTGTGATGCAGTGTATGAGGCTCGTCTGTACGCACGCTTTCTTGCGGT
TGTGATGCATTCTGTCAATTGGTCACACTCGCCGTTTGCAATCTCTGGTT
CATTGTCAGCACCTGAAACTTTCCCGCCCCGGAAACACAAATCGGGGAAG
GAAGAGACATCCGATGCAGATAACTTGCACTCGAACGTGCCCCAGGCGGC
CCATAGAAAAGAACAGACTGAAAGGCAGCAAGGAAAGCAAAGAGAAGAGA
CACGTAAAAAGCATAGTTCCGGGAAAACCAGGCATCCGAATCATGTCAGG
TCTATCGCGACTGCAGAAACGCCGGGTCTGGGATCACATGCTCTTCAATG
GCGCGCTTGGCATCTTACAGCTTTGTGGCAAAGCGTATTCAATATCGATG
AGCTAATCACCAGTGCTGTGTCATCGAAACAAATAACGGCGATCGTCGCA
GCAGCTGCAGTCGCAGATGTTCTGCTCAGATTCGCCGCAATCGATCCAGT
AGCGAAAGTGAGCTCATGGTTTCGGGAAGGTCTTTCTGCTATGAAAAAGC
TTGTCGTGATCGATCGAGGAATTGATGTTCAAATGCCATTCGTGCATATT
CTAAAGATCGATCTCTTCTCTTGTGATGAGATCAGCGCACAAGGCTCGAA
CTGGTGGGAGAACCAAGGGCTCGATGACAACTATGTAATGAAATCCGATT
GCAGTGAATGGTCGGCGATCGGGAACATGAGACTTGTGCAAGAATGTTGT
ACGTCCCTCGCACTTTTTCGCAGAAATCTAGCCGACTGTAGCGATACAAA
GTGGCAGAAAACAACACCTCGACGAATCACACCACGAATGACCGGTTCCA
CAGACGCACTTTCTCCGCTACAGACCCATACAGGGCGTGAGACGAACAGC
ACGTTGGGACAAAAAGAGGAGGAAAAAGGGAATGAACGAGACGGGCGAGA
GGAAGTTCGGAAAGAATTTTTGTCTCGATTGGATCCGAGATTGCGGGAAT
TGATGCACATAGTAGTGTCTTCACGACCCGACAATGAAGAAGACGCCCAA
AAGAAGTTCTTGAGAGTCGCAAAAACTTTGTATTCTGAAGTACCAGTCAC
AGTGCGGGCAGTAGCGGCTCATTTGTGTGGAGACGAAGTAAAATCAAGAC
TGCAATCTCCATTAGCAGAATAG
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protein sequence of Gvermi12458.t1

>Gvermi12458.t1 ID=Gvermi12458.t1|Name=Gvermi12458.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=841bp
MNGHDAAAEKTFAARQFLSEFASGLHQSRDTHTNRPEHVPKPRKPKRRMR
PISVANVPAAHDNGLSSASHEGLTRLSLADQSLHNEIPKLFPSSESHLQK
SESPFLRKLQIAPSASENQVAQAPEKGTDSVPVPAGSFSPQISKHLKESS
DDQSSPTKPEQQQHGLLSEALQNRAITHATHVRTIANDPTLFLEALQTLY
QLTCISSSNSTEHDVSLLIYHTSRPTRLKYCQTVLSHLYDILRAYPVPIQ
RALNLSTTAADFPQPPTGAWVPFHPSHLSFRRLAEESSEVLPMSNRLKTN
LEVTWDALLDMLRTYCGHKQEAAGSVDDEKVVSVINSLHPCNIDIFASRF
VNLLSTHTVNVQQPTHIRLLDERFHAQSISFKKSKDIGVILHRVPQRVLE
AFGDVPAHKFFARFLTGIDSARLYTALVPRFLARVLEALSRASNANSNHE
FCDAVYEARLYARFLAVVMHSVNWSHSPFAISGSLSAPETFPPRKHKSGK
EETSDADNLHSNVPQAAHRKEQTERQQGKQREETRKKHSSGKTRHPNHVR
SIATAETPGLGSHALQWRAWHLTALWQSVFNIDELITSAVSSKQITAIVA
AAAVADVLLRFAAIDPVAKVSSWFREGLSAMKKLVVIDRGIDVQMPFVHI
LKIDLFSCDEISAQGSNWWENQGLDDNYVMKSDCSEWSAIGNMRLVQECC
TSLALFRRNLADCSDTKWQKTTPRRITPRMTGSTDALSPLQTHTGRETNS
TLGQKEEEKGNERDGREEVRKEFLSRLDPRLRELMHIVVSSRPDNEEDAQ
KKFLRVAKTLYSEVPVTVRAVAAHLCGDEVKSRLQSPLAE*
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mRNA from alignment at ScGOVlb_3404:4921619..4924141-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12458.t1 ID=Gvermi12458.t1|Name=Gvermi12458.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2523bp|location=Sequence derived from alignment at ScGOVlb_3404:4921619..4924141- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACGGGCACGACGCTGCCGCCGAAAAGACCTTCGCCGCCAGGCAATT TCTATCCGAGTTCGCATCTGGACTACACCAAAGTCGAGACACACACACTA ACCGACCCGAACATGTCCCAAAACCTCGCAAACCAAAACGTCGCATGCGC CCAATTAGTGTGGCGAACGTTCCCGCAGCGCACGACAACGGCTTATCATC CGCATCGCATGAAGGCCTTACCCGTTTATCACTGGCAGATCAATCGCTTC ACAACGAGATCCCCAAGTTATTTCCTTCTTCCGAGAGCCATTTGCAAAAG AGCGAAAGCCCGTTTTTACGAAAGCTTCAGATAGCCCCTAGTGCATCTGA AAACCAAGTCGCTCAGGCTCCGGAGAAAGGGACTGATTCTGTCCCTGTGC CCGCAGGCTCTTTTTCCCCGCAGATTTCAAAACATCTCAAGGAAAGTAGC GATGACCAGAGCTCCCCAACAAAACCAGAACAGCAGCAACATGGCCTCTT GTCTGAAGCCCTGCAGAATCGAGCAATCACTCACGCTACTCACGTTCGCA CCATTGCAAATGATCCAACGCTCTTCCTAGAAGCACTGCAAACTCTGTAC CAACTTACATGTATATCTTCATCTAACTCCACCGAGCACGATGTGTCTCT GCTGATTTATCACACATCCAGACCCACACGTTTAAAATACTGCCAAACCG TTCTCTCACATCTCTATGACATTTTGCGCGCTTACCCTGTTCCGATACAA CGAGCTCTAAATCTAAGCACAACTGCTGCCGATTTTCCGCAACCACCCAC CGGTGCTTGGGTTCCTTTTCATCCGTCCCATTTATCTTTCCGTCGTTTGG CAGAAGAGTCTAGCGAAGTACTGCCCATGTCAAACCGTCTTAAAACCAAT TTAGAAGTAACTTGGGACGCTCTCTTGGATATGCTTCGCACGTACTGCGG ACATAAACAGGAAGCAGCCGGCTCAGTGGATGACGAAAAGGTTGTGAGCG TGATAAACTCCCTTCATCCATGCAATATCGACATCTTCGCCTCCAGATTT GTCAATCTATTGAGCACCCACACCGTCAATGTCCAGCAACCCACTCACAT ACGCCTGCTCGATGAAAGGTTTCACGCCCAGTCAATATCTTTCAAGAAGT CCAAAGACATCGGTGTCATCCTCCATCGCGTTCCGCAACGCGTGCTTGAA GCATTTGGTGATGTTCCGGCCCACAAGTTCTTCGCTCGGTTCCTGACTGG AATAGACTCGGCGCGTTTGTATACAGCTCTCGTGCCGAGATTTCTTGCGC GCGTCTTGGAAGCCTTGAGCAGGGCATCCAATGCCAATTCAAACCATGAG TTCTGTGATGCAGTGTATGAGGCTCGTCTGTACGCACGCTTTCTTGCGGT TGTGATGCATTCTGTCAATTGGTCACACTCGCCGTTTGCAATCTCTGGTT CATTGTCAGCACCTGAAACTTTCCCGCCCCGGAAACACAAATCGGGGAAG GAAGAGACATCCGATGCAGATAACTTGCACTCGAACGTGCCCCAGGCGGC CCATAGAAAAGAACAGACTGAAAGGCAGCAAGGAAAGCAAAGAGAAGAGA CACGTAAAAAGCATAGTTCCGGGAAAACCAGGCATCCGAATCATGTCAGG TCTATCGCGACTGCAGAAACGCCGGGTCTGGGATCACATGCTCTTCAATG GCGCGCTTGGCATCTTACAGCTTTGTGGCAAAGCGTATTCAATATCGATG AGCTAATCACCAGTGCTGTGTCATCGAAACAAATAACGGCGATCGTCGCA GCAGCTGCAGTCGCAGATGTTCTGCTCAGATTCGCCGCAATCGATCCAGT AGCGAAAGTGAGCTCATGGTTTCGGGAAGGTCTTTCTGCTATGAAAAAGC TTGTCGTGATCGATCGAGGAATTGATGTTCAAATGCCATTCGTGCATATT CTAAAGATCGATCTCTTCTCTTGTGATGAGATCAGCGCACAAGGCTCGAA CTGGTGGGAGAACCAAGGGCTCGATGACAACTATGTAATGAAATCCGATT GCAGTGAATGGTCGGCGATCGGGAACATGAGACTTGTGCAAGAATGTTGT ACGTCCCTCGCACTTTTTCGCAGAAATCTAGCCGACTGTAGCGATACAAA GTGGCAGAAAACAACACCTCGACGAATCACACCACGAATGACCGGTTCCA CAGACGCACTTTCTCCGCTACAGACCCATACAGGGCGTGAGACGAACAGC ACGTTGGGACAAAAAGAGGAGGAAAAAGGGAATGAACGAGACGGGCGAGA GGAAGTTCGGAAAGAATTTTTGTCTCGATTGGATCCGAGATTGCGGGAAT TGATGCACATAGTAGTGTCTTCACGACCCGACAATGAAGAAGACGCCCAA AAGAAGTTCTTGAGAGTCGCAAAAACTTTGTATTCTGAAGTACCAGTCAC AGTGCGGGCAGTAGCGGCTCATTTGTGTGGAGACGAAGTAAAATCAAGAC TGCAATCTCCATTAGCAGAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4921619..4924141-

>Gvermi12458.t1 ID=Gvermi12458.t1|Name=Gvermi12458.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2523bp|location=Sequence derived from alignment at ScGOVlb_3404:4921619..4924141- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACGGGCACGACGCTGCCGCCGAAAAGACCTTCGCCGCCAGGCAATT
TCTATCCGAGTTCGCATCTGGACTACACCAAAGTCGAGACACACACACTA
ACCGACCCGAACATGTCCCAAAACCTCGCAAACCAAAACGTCGCATGCGC
CCAATTAGTGTGGCGAACGTTCCCGCAGCGCACGACAACGGCTTATCATC
CGCATCGCATGAAGGCCTTACCCGTTTATCACTGGCAGATCAATCGCTTC
ACAACGAGATCCCCAAGTTATTTCCTTCTTCCGAGAGCCATTTGCAAAAG
AGCGAAAGCCCGTTTTTACGAAAGCTTCAGATAGCCCCTAGTGCATCTGA
AAACCAAGTCGCTCAGGCTCCGGAGAAAGGGACTGATTCTGTCCCTGTGC
CCGCAGGCTCTTTTTCCCCGCAGATTTCAAAACATCTCAAGGAAAGTAGC
GATGACCAGAGCTCCCCAACAAAACCAGAACAGCAGCAACATGGCCTCTT
GTCTGAAGCCCTGCAGAATCGAGCAATCACTCACGCTACTCACGTTCGCA
CCATTGCAAATGATCCAACGCTCTTCCTAGAAGCACTGCAAACTCTGTAC
CAACTTACATGTATATCTTCATCTAACTCCACCGAGCACGATGTGTCTCT
GCTGATTTATCACACATCCAGACCCACACGTTTAAAATACTGCCAAACCG
TTCTCTCACATCTCTATGACATTTTGCGCGCTTACCCTGTTCCGATACAA
CGAGCTCTAAATCTAAGCACAACTGCTGCCGATTTTCCGCAACCACCCAC
CGGTGCTTGGGTTCCTTTTCATCCGTCCCATTTATCTTTCCGTCGTTTGG
CAGAAGAGTCTAGCGAAGTACTGCCCATGTCAAACCGTCTTAAAACCAAT
TTAGAAGTAACTTGGGACGCTCTCTTGGATATGCTTCGCACGTACTGCGG
ACATAAACAGGAAGCAGCCGGCTCAGTGGATGACGAAAAGGTTGTGAGCG
TGATAAACTCCCTTCATCCATGCAATATCGACATCTTCGCCTCCAGATTT
GTCAATCTATTGAGCACCCACACCGTCAATGTCCAGCAACCCACTCACAT
ACGCCTGCTCGATGAAAGGTTTCACGCCCAGTCAATATCTTTCAAGAAGT
CCAAAGACATCGGTGTCATCCTCCATCGCGTTCCGCAACGCGTGCTTGAA
GCATTTGGTGATGTTCCGGCCCACAAGTTCTTCGCTCGGTTCCTGACTGG
AATAGACTCGGCGCGTTTGTATACAGCTCTCGTGCCGAGATTTCTTGCGC
GCGTCTTGGAAGCCTTGAGCAGGGCATCCAATGCCAATTCAAACCATGAG
TTCTGTGATGCAGTGTATGAGGCTCGTCTGTACGCACGCTTTCTTGCGGT
TGTGATGCATTCTGTCAATTGGTCACACTCGCCGTTTGCAATCTCTGGTT
CATTGTCAGCACCTGAAACTTTCCCGCCCCGGAAACACAAATCGGGGAAG
GAAGAGACATCCGATGCAGATAACTTGCACTCGAACGTGCCCCAGGCGGC
CCATAGAAAAGAACAGACTGAAAGGCAGCAAGGAAAGCAAAGAGAAGAGA
CACGTAAAAAGCATAGTTCCGGGAAAACCAGGCATCCGAATCATGTCAGG
TCTATCGCGACTGCAGAAACGCCGGGTCTGGGATCACATGCTCTTCAATG
GCGCGCTTGGCATCTTACAGCTTTGTGGCAAAGCGTATTCAATATCGATG
AGCTAATCACCAGTGCTGTGTCATCGAAACAAATAACGGCGATCGTCGCA
GCAGCTGCAGTCGCAGATGTTCTGCTCAGATTCGCCGCAATCGATCCAGT
AGCGAAAGTGAGCTCATGGTTTCGGGAAGGTCTTTCTGCTATGAAAAAGC
TTGTCGTGATCGATCGAGGAATTGATGTTCAAATGCCATTCGTGCATATT
CTAAAGATCGATCTCTTCTCTTGTGATGAGATCAGCGCACAAGGCTCGAA
CTGGTGGGAGAACCAAGGGCTCGATGACAACTATGTAATGAAATCCGATT
GCAGTGAATGGTCGGCGATCGGGAACATGAGACTTGTGCAAGAATGTTGT
ACGTCCCTCGCACTTTTTCGCAGAAATCTAGCCGACTGTAGCGATACAAA
GTGGCAGAAAACAACACCTCGACGAATCACACCACGAATGACCGGTTCCA
CAGACGCACTTTCTCCGCTACAGACCCATACAGGGCGTGAGACGAACAGC
ACGTTGGGACAAAAAGAGGAGGAAAAAGGGAATGAACGAGACGGGCGAGA
GGAAGTTCGGAAAGAATTTTTGTCTCGATTGGATCCGAGATTGCGGGAAT
TGATGCACATAGTAGTGTCTTCACGACCCGACAATGAAGAAGACGCCCAA
AAGAAGTTCTTGAGAGTCGCAAAAACTTTGTATTCTGAAGTACCAGTCAC
AGTGCGGGCAGTAGCGGCTCATTTGTGTGGAGACGAAGTAAAATCAAGAC
TGCAATCTCCATTAGCAGAATAG
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