|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005704869.1 |
| PFAMs | Adaptin_N,Alpha_adaptinC2 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K12391 |
| KEGG Pathway | ko04142,map04142 |
| GOs | GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0006810,GO:0006892,GO:0006895,GO:0008150,GO:0012505,GO:0012506,GO:0012510,GO:0016020,GO:0016192,GO:0016482,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030121,GO:0030125,GO:0030130,GO:0030131,GO:0030133,GO:0030135,GO:0030136,GO:0030140,GO:0030276,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030665,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0097708,GO:0098588,GO:0098796,GO:0098805 |
| Evalue | 6.1e-99 |
| EggNOG OGs | COG4354@1|root,KOG1062@2759|Eukaryota |
| Description | intracellular protein transport |
| COG category | G |
| BRITE | ko00000,ko00001,ko04131 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi12454.t1 ID=Gvermi12454.t1|Name=Gvermi12454.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=862bp MNAKKLLKSAKSNWSKAKRTYICRTLKEVIKAYRACTTRSEERALVKKES AHIRDLFREGDKAFRRRNVAKLLFFHMNGYPTDFGMTECIKLCASNKYND KRIAYLGLMILVDESEEILMLITNSLQRDLQSDDVNIISLALNLLSDIAS TEMVRDLLPQIETHLHSNDPYIRKKAALAAVRAVRKLTPDETIGILDAIP AMFEAKSQRLYISASALVSALCKQGASDMDIFRQHLVPVVLNVCQDYLLR ERTQQQSKGTSASLVSKVKNPGIHVKLLTALRHLIVVGLSDEQNRVVSEI LSQIASSTESTSFSGCSVLYECVRAIIALNPEVSLWNQSISVLSNFLAHK EATIRYIGLQELISVADVHGSTALAQISGLKDKVLSGLRESDPTVRKRAA EVLYRITNDSNCEEMLTALLEYIEKSSLPEAIEDGCWKLVSLLDKSNAAD SWKVDMLVRALAIADTHMPEDLVGAFLAMVSSKVHVQGHAVKQLFTEAFI KKQDEKQSHSQMPTNLLEFGEREPTVENSNDVVRIDPRNRRLRLERVAIY VVGEYGQTASVIGLQMSQVLMAFKEILASAEIVEDIWLDAKGVEKNAEMS MLAEVTLTSLMKFVCRLSSPEPSTGGDLDSLFHSLPPPSRDSTVKESTLA DDLLDGLKLDDGKDHQSLVPVPAQANISSKAIISLDNQGMDGVNFRTGTI PDQVCYILSAHAMSADIEIQQRACEYMTLLREELRPVLESVMAPLPTLDF AAIQRKSNQRRAAARSSVSTFTSQRDGVLLDLMGEPSGEIGSPFAALPSP DGTNMVSEAASASQHQKDMSLFDVLGDSAISSTKSEVVGSDDLISILAQP TTNNDFDRPSL* back to topspliced messenger RNA >Gvermi12454.t1 ID=Gvermi12454.t1|Name=Gvermi12454.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2586bp|location=Sequence derived from alignment at ScGOVlb_3404:4900200..4902785+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGAATGCGAAGAAACTGCTGAAGAGCGCCAAGTCAAACTGGTCAAAGGC AAAACGCACTTACATATGTCGAACCTTAAAAGAGGTCATCAAGGCCTATC GCGCTTGCACGACCCGTTCCGAAGAAAGAGCGCTCGTCAAGAAAGAATCC GCCCACATTCGAGATCTTTTTCGAGAAGGTGACAAAGCGTTCCGCCGCCG AAATGTTGCAAAACTCCTCTTCTTCCATATGAACGGTTATCCCACGGACT TCGGAATGACAGAGTGCATCAAACTCTGTGCCAGCAACAAATACAATGAC AAGAGGATCGCATACCTGGGGTTGATGATCCTTGTAGATGAATCGGAAGA AATTTTGATGTTGATAACCAACAGCCTGCAGAGGGATCTGCAAAGTGATG ATGTCAATATCATCAGTTTGGCCCTCAACTTGTTGAGTGACATTGCGAGT ACTGAGATGGTTCGTGATTTGTTGCCTCAGATTGAAACGCATTTACATTC AAACGATCCATATATTCGGAAGAAGGCTGCTTTAGCGGCCGTTCGCGCAG TCAGAAAGCTCACACCTGATGAAACCATCGGCATTTTAGACGCTATTCCT GCAATGTTTGAAGCCAAATCGCAAAGGTTGTACATATCTGCCTCGGCGCT GGTGTCTGCTCTGTGCAAACAGGGCGCCTCGGATATGGACATATTTCGCC AACATCTCGTTCCGGTCGTGCTCAATGTTTGCCAGGACTATCTTCTTCGA GAACGCACTCAGCAACAATCGAAGGGCACGTCTGCCTCATTGGTTTCCAA GGTCAAGAATCCTGGTATTCATGTCAAACTTCTGACGGCGTTGAGACATT TAATAGTTGTTGGGCTTTCTGATGAGCAGAACAGAGTTGTGAGTGAGATT CTATCTCAAATCGCTTCTTCAACAGAGTCCACGTCATTTTCCGGATGTTC CGTGTTGTATGAATGTGTTCGCGCCATAATTGCGCTAAATCCGGAGGTCA GTTTATGGAACCAATCAATCTCAGTTTTGAGTAACTTCCTCGCACACAAG GAGGCGACTATCAGGTACATCGGGCTGCAGGAACTCATCTCTGTGGCTGA TGTTCACGGAAGTACCGCCTTGGCGCAAATCAGCGGGTTAAAGGACAAGG TATTGTCGGGTTTGCGCGAATCGGACCCGACTGTCAGGAAGAGAGCGGCA GAAGTTCTATATCGAATCACAAATGATTCCAACTGCGAAGAAATGCTAAC GGCACTTCTTGAATACATTGAGAAGAGCTCGCTTCCAGAAGCCATTGAAG ATGGATGTTGGAAGTTGGTTTCCTTGCTCGACAAATCTAACGCAGCAGAT TCTTGGAAGGTAGATATGCTTGTGCGGGCTCTGGCGATAGCGGACACGCA TATGCCGGAAGATCTAGTGGGTGCGTTCTTAGCCATGGTTTCTTCCAAAG TGCATGTCCAAGGCCATGCCGTGAAGCAGTTGTTCACGGAGGCCTTCATA AAGAAACAGGATGAAAAGCAGTCACATTCACAGATGCCGACCAATCTTCT CGAGTTCGGAGAACGTGAACCCACAGTTGAAAATTCAAATGACGTAGTGC GTATAGATCCGCGAAACAGAAGACTTCGATTAGAGCGTGTGGCGATTTAT GTTGTGGGTGAGTATGGTCAAACAGCTTCCGTCATCGGGCTTCAAATGTC GCAAGTGCTGATGGCGTTCAAGGAAATTCTAGCTTCAGCGGAAATTGTTG AAGACATCTGGTTGGATGCGAAGGGTGTCGAAAAGAATGCTGAAATGAGC ATGTTAGCAGAAGTTACTTTGACTAGCTTGATGAAATTTGTGTGTCGCCT GTCTTCTCCGGAGCCTAGTACCGGAGGAGATCTTGACTCATTATTTCATA GTCTTCCTCCGCCATCAAGAGACTCTACTGTCAAGGAATCAACTTTGGCA GACGATTTATTAGATGGGCTGAAACTGGACGACGGGAAAGATCACCAATC TCTCGTACCAGTGCCTGCGCAAGCTAATATTTCGAGCAAAGCAATAATTA GTCTCGATAATCAAGGCATGGATGGTGTCAATTTCAGGACCGGTACCATT CCAGATCAGGTTTGCTACATTCTTTCAGCGCATGCTATGTCGGCCGATAT TGAAATACAACAACGTGCATGTGAGTACATGACACTGCTTCGAGAAGAAT TGCGACCTGTTCTGGAAAGCGTAATGGCACCACTTCCCACCCTCGACTTT GCCGCAATTCAAAGAAAGTCCAACCAGAGAAGGGCAGCGGCTCGAAGTAG CGTAAGCACTTTTACCTCGCAGAGAGACGGTGTGCTGCTCGACCTCATGG GTGAGCCAAGTGGGGAAATTGGAAGCCCGTTTGCTGCTCTTCCCTCCCCG GATGGCACCAATATGGTGTCCGAAGCCGCAAGCGCCTCACAACATCAAAA AGACATGTCTCTCTTTGATGTTCTCGGGGATTCGGCCATTTCTTCCACAA AGTCGGAAGTGGTAGGCTCAGATGATCTCATTAGCATTCTTGCACAACCA ACGACCAACAACGATTTCGATAGACCGTCGCTATAA back to topprotein sequence of Gvermi12454.t1 >Gvermi12454.t1 ID=Gvermi12454.t1|Name=Gvermi12454.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=862bp
MNAKKLLKSAKSNWSKAKRTYICRTLKEVIKAYRACTTRSEERALVKKES AHIRDLFREGDKAFRRRNVAKLLFFHMNGYPTDFGMTECIKLCASNKYND KRIAYLGLMILVDESEEILMLITNSLQRDLQSDDVNIISLALNLLSDIAS TEMVRDLLPQIETHLHSNDPYIRKKAALAAVRAVRKLTPDETIGILDAIP AMFEAKSQRLYISASALVSALCKQGASDMDIFRQHLVPVVLNVCQDYLLR ERTQQQSKGTSASLVSKVKNPGIHVKLLTALRHLIVVGLSDEQNRVVSEI LSQIASSTESTSFSGCSVLYECVRAIIALNPEVSLWNQSISVLSNFLAHK EATIRYIGLQELISVADVHGSTALAQISGLKDKVLSGLRESDPTVRKRAA EVLYRITNDSNCEEMLTALLEYIEKSSLPEAIEDGCWKLVSLLDKSNAAD SWKVDMLVRALAIADTHMPEDLVGAFLAMVSSKVHVQGHAVKQLFTEAFI KKQDEKQSHSQMPTNLLEFGEREPTVENSNDVVRIDPRNRRLRLERVAIY VVGEYGQTASVIGLQMSQVLMAFKEILASAEIVEDIWLDAKGVEKNAEMS MLAEVTLTSLMKFVCRLSSPEPSTGGDLDSLFHSLPPPSRDSTVKESTLA DDLLDGLKLDDGKDHQSLVPVPAQANISSKAIISLDNQGMDGVNFRTGTI PDQVCYILSAHAMSADIEIQQRACEYMTLLREELRPVLESVMAPLPTLDF AAIQRKSNQRRAAARSSVSTFTSQRDGVLLDLMGEPSGEIGSPFAALPSP DGTNMVSEAASASQHQKDMSLFDVLGDSAISSTKSEVVGSDDLISILAQP TTNNDFDRPSL* back to topmRNA from alignment at ScGOVlb_3404:4900200..4902785+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi12454.t1 ID=Gvermi12454.t1|Name=Gvermi12454.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2586bp|location=Sequence derived from alignment at ScGOVlb_3404:4900200..4902785+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGAATGCGAAGAAACTGCTGAAGAGCGCCAAGTCAAACTGGTCAAAGGC
AAAACGCACTTACATATGTCGAACCTTAAAAGAGGTCATCAAGGCCTATC
GCGCTTGCACGACCCGTTCCGAAGAAAGAGCGCTCGTCAAGAAAGAATCC
GCCCACATTCGAGATCTTTTTCGAGAAGGTGACAAAGCGTTCCGCCGCCG
AAATGTTGCAAAACTCCTCTTCTTCCATATGAACGGTTATCCCACGGACT
TCGGAATGACAGAGTGCATCAAACTCTGTGCCAGCAACAAATACAATGAC
AAGAGGATCGCATACCTGGGGTTGATGATCCTTGTAGATGAATCGGAAGA
AATTTTGATGTTGATAACCAACAGCCTGCAGAGGGATCTGCAAAGTGATG
ATGTCAATATCATCAGTTTGGCCCTCAACTTGTTGAGTGACATTGCGAGT
ACTGAGATGGTTCGTGATTTGTTGCCTCAGATTGAAACGCATTTACATTC
AAACGATCCATATATTCGGAAGAAGGCTGCTTTAGCGGCCGTTCGCGCAG
TCAGAAAGCTCACACCTGATGAAACCATCGGCATTTTAGACGCTATTCCT
GCAATGTTTGAAGCCAAATCGCAAAGGTTGTACATATCTGCCTCGGCGCT
GGTGTCTGCTCTGTGCAAACAGGGCGCCTCGGATATGGACATATTTCGCC
AACATCTCGTTCCGGTCGTGCTCAATGTTTGCCAGGACTATCTTCTTCGA
GAACGCACTCAGCAACAATCGAAGGGCACGTCTGCCTCATTGGTTTCCAA
GGTCAAGAATCCTGGTATTCATGTCAAACTTCTGACGGCGTTGAGACATT
TAATAGTTGTTGGGCTTTCTGATGAGCAGAACAGAGTTGTGAGTGAGATT
CTATCTCAAATCGCTTCTTCAACAGAGTCCACGTCATTTTCCGGATGTTC
CGTGTTGTATGAATGTGTTCGCGCCATAATTGCGCTAAATCCGGAGGTCA
GTTTATGGAACCAATCAATCTCAGTTTTGAGTAACTTCCTCGCACACAAG
GAGGCGACTATCAGGTACATCGGGCTGCAGGAACTCATCTCTGTGGCTGA
TGTTCACGGAAGTACCGCCTTGGCGCAAATCAGCGGGTTAAAGGACAAGG
TATTGTCGGGTTTGCGCGAATCGGACCCGACTGTCAGGAAGAGAGCGGCA
GAAGTTCTATATCGAATCACAAATGATTCCAACTGCGAAGAAATGCTAAC
GGCACTTCTTGAATACATTGAGAAGAGCTCGCTTCCAGAAGCCATTGAAG
ATGGATGTTGGAAGTTGGTTTCCTTGCTCGACAAATCTAACGCAGCAGAT
TCTTGGAAGGTAGATATGCTTGTGCGGGCTCTGGCGATAGCGGACACGCA
TATGCCGGAAGATCTAGTGGGTGCGTTCTTAGCCATGGTTTCTTCCAAAG
TGCATGTCCAAGGCCATGCCGTGAAGCAGTTGTTCACGGAGGCCTTCATA
AAGAAACAGGATGAAAAGCAGTCACATTCACAGATGCCGACCAATCTTCT
CGAGTTCGGAGAACGTGAACCCACAGTTGAAAATTCAAATGACGTAGTGC
GTATAGATCCGCGAAACAGAAGACTTCGATTAGAGCGTGTGGCGATTTAT
GTTGTGGGTGAGTATGGTCAAACAGCTTCCGTCATCGGGCTTCAAATGTC
GCAAGTGCTGATGGCGTTCAAGGAAATTCTAGCTTCAGCGGAAATTGTTG
AAGACATCTGGTTGGATGCGAAGGGTGTCGAAAAGAATGCTGAAATGAGC
ATGTTAGCAGAAGTTACTTTGACTAGCTTGATGAAATTTGTGTGTCGCCT
GTCTTCTCCGGAGCCTAGTACCGGAGGAGATCTTGACTCATTATTTCATA
GTCTTCCTCCGCCATCAAGAGACTCTACTGTCAAGGAATCAACTTTGGCA
GACGATTTATTAGATGGGCTGAAACTGGACGACGGGAAAGATCACCAATC
TCTCGTACCAGTGCCTGCGCAAGCTAATATTTCGAGCAAAGCAATAATTA
GTCTCGATAATCAAGGCATGGATGGTGTCAATTTCAGGACCGGTACCATT
CCAGATCAGGTTTGCTACATTCTTTCAGCGCATGCTATGTCGGCCGATAT
TGAAATACAACAACGTGCATGTGAGTACATGACACTGCTTCGAGAAGAAT
TGCGACCTGTTCTGGAAAGCGTAATGGCACCACTTCCCACCCTCGACTTT
GCCGCAATTCAAAGAAAGTCCAACCAGAGAAGGGCAGCGGCTCGAAGTAG
CGTAAGCACTTTTACCTCGCAGAGAGACGGTGTGCTGCTCGACCTCATGG
GTGAGCCAAGTGGGGAAATTGGAAGCCCGTTTGCTGCTCTTCCCTCCCCG
GATGGCACCAATATGGTGTCCGAAGCCGCAAGCGCCTCACAACATCAAAA
AGACATGTCTCTCTTTGATGTTCTCGGGGATTCGGCCATTTCTTCCACAA
AGTCGGAAGTGGTAGGCTCAGATGATCTCATTAGCATTCTTGCACAACCA
ACGACCAACAACGATTTCGATAGACCGTCGCTATAA back to topCoding sequence (CDS) from alignment at ScGOVlb_3404:4900200..4902785+ >Gvermi12454.t1 ID=Gvermi12454.t1|Name=Gvermi12454.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2586bp|location=Sequence derived from alignment at ScGOVlb_3404:4900200..4902785+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGAATGCGAAGAAACTGCTGAAGAGCGCCAAGTCAAACTGGTCAAAGGC AAAACGCACTTACATATGTCGAACCTTAAAAGAGGTCATCAAGGCCTATC GCGCTTGCACGACCCGTTCCGAAGAAAGAGCGCTCGTCAAGAAAGAATCC GCCCACATTCGAGATCTTTTTCGAGAAGGTGACAAAGCGTTCCGCCGCCG AAATGTTGCAAAACTCCTCTTCTTCCATATGAACGGTTATCCCACGGACT TCGGAATGACAGAGTGCATCAAACTCTGTGCCAGCAACAAATACAATGAC AAGAGGATCGCATACCTGGGGTTGATGATCCTTGTAGATGAATCGGAAGA AATTTTGATGTTGATAACCAACAGCCTGCAGAGGGATCTGCAAAGTGATG ATGTCAATATCATCAGTTTGGCCCTCAACTTGTTGAGTGACATTGCGAGT ACTGAGATGGTTCGTGATTTGTTGCCTCAGATTGAAACGCATTTACATTC AAACGATCCATATATTCGGAAGAAGGCTGCTTTAGCGGCCGTTCGCGCAG TCAGAAAGCTCACACCTGATGAAACCATCGGCATTTTAGACGCTATTCCT GCAATGTTTGAAGCCAAATCGCAAAGGTTGTACATATCTGCCTCGGCGCT GGTGTCTGCTCTGTGCAAACAGGGCGCCTCGGATATGGACATATTTCGCC AACATCTCGTTCCGGTCGTGCTCAATGTTTGCCAGGACTATCTTCTTCGA GAACGCACTCAGCAACAATCGAAGGGCACGTCTGCCTCATTGGTTTCCAA GGTCAAGAATCCTGGTATTCATGTCAAACTTCTGACGGCGTTGAGACATT TAATAGTTGTTGGGCTTTCTGATGAGCAGAACAGAGTTGTGAGTGAGATT CTATCTCAAATCGCTTCTTCAACAGAGTCCACGTCATTTTCCGGATGTTC CGTGTTGTATGAATGTGTTCGCGCCATAATTGCGCTAAATCCGGAGGTCA GTTTATGGAACCAATCAATCTCAGTTTTGAGTAACTTCCTCGCACACAAG GAGGCGACTATCAGGTACATCGGGCTGCAGGAACTCATCTCTGTGGCTGA TGTTCACGGAAGTACCGCCTTGGCGCAAATCAGCGGGTTAAAGGACAAGG TATTGTCGGGTTTGCGCGAATCGGACCCGACTGTCAGGAAGAGAGCGGCA GAAGTTCTATATCGAATCACAAATGATTCCAACTGCGAAGAAATGCTAAC GGCACTTCTTGAATACATTGAGAAGAGCTCGCTTCCAGAAGCCATTGAAG ATGGATGTTGGAAGTTGGTTTCCTTGCTCGACAAATCTAACGCAGCAGAT TCTTGGAAGGTAGATATGCTTGTGCGGGCTCTGGCGATAGCGGACACGCA TATGCCGGAAGATCTAGTGGGTGCGTTCTTAGCCATGGTTTCTTCCAAAG TGCATGTCCAAGGCCATGCCGTGAAGCAGTTGTTCACGGAGGCCTTCATA AAGAAACAGGATGAAAAGCAGTCACATTCACAGATGCCGACCAATCTTCT CGAGTTCGGAGAACGTGAACCCACAGTTGAAAATTCAAATGACGTAGTGC GTATAGATCCGCGAAACAGAAGACTTCGATTAGAGCGTGTGGCGATTTAT GTTGTGGGTGAGTATGGTCAAACAGCTTCCGTCATCGGGCTTCAAATGTC GCAAGTGCTGATGGCGTTCAAGGAAATTCTAGCTTCAGCGGAAATTGTTG AAGACATCTGGTTGGATGCGAAGGGTGTCGAAAAGAATGCTGAAATGAGC ATGTTAGCAGAAGTTACTTTGACTAGCTTGATGAAATTTGTGTGTCGCCT GTCTTCTCCGGAGCCTAGTACCGGAGGAGATCTTGACTCATTATTTCATA GTCTTCCTCCGCCATCAAGAGACTCTACTGTCAAGGAATCAACTTTGGCA GACGATTTATTAGATGGGCTGAAACTGGACGACGGGAAAGATCACCAATC TCTCGTACCAGTGCCTGCGCAAGCTAATATTTCGAGCAAAGCAATAATTA GTCTCGATAATCAAGGCATGGATGGTGTCAATTTCAGGACCGGTACCATT CCAGATCAGGTTTGCTACATTCTTTCAGCGCATGCTATGTCGGCCGATAT TGAAATACAACAACGTGCATGTGAGTACATGACACTGCTTCGAGAAGAAT TGCGACCTGTTCTGGAAAGCGTAATGGCACCACTTCCCACCCTCGACTTT GCCGCAATTCAAAGAAAGTCCAACCAGAGAAGGGCAGCGGCTCGAAGTAG CGTAAGCACTTTTACCTCGCAGAGAGACGGTGTGCTGCTCGACCTCATGG GTGAGCCAAGTGGGGAAATTGGAAGCCCGTTTGCTGCTCTTCCCTCCCCG GATGGCACCAATATGGTGTCCGAAGCCGCAAGCGCCTCACAACATCAAAA AGACATGTCTCTCTTTGATGTTCTCGGGGATTCGGCCATTTCTTCCACAA AGTCGGAAGTGGTAGGCTCAGATGATCTCATTAGCATTCTTGCACAACCA ACGACCAACAACGATTTCGATAGACCGTCGCTATAA back to top
|