Gvermi12450.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12450.t1
Unique NameGvermi12450.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length463
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4851526..4852914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog81824.XP_001747587.1
Preferred nameALG11
PFAMsALG11_N,Glycos_transf_1
Max annot lvl33154|Opisthokonta
KEGG koko:K03844
KEGG ReactionR06127,R06128
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
KEGG ModuleM00055
GOsGO:0000026,GO:0000030,GO:0003674,GO:0003824,GO:0004376,GO:0004377,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0031984,GO:0033577,GO:0034645,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070085,GO:0071704,GO:0097502,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue6.23e-83
EggNOG OGsCOG0438@1|root,KOG1387@2759|Eukaryota,38HCD@33154|Opisthokonta
EC2.4.1.131
DescriptionGDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity
COG categoryM
CAZyGT4
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12450Gvermi12450Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4851526..4852914 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12450.t1.stop1Gvermi12450.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4851526..4851528 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12450.t1.CDS1Gvermi12450.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4851526..4852914 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12450.t1.exon1Gvermi12450.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4851526..4852914 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12450.t1.start1Gvermi12450.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4852912..4852914 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12450.t1Gvermi12450.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4851526..4852914 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12450.t1 ID=Gvermi12450.t1|Name=Gvermi12450.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=463bp
MVSHYALVGYSVLLLLLALLGFRKNVRRKRKDLIKFRHRSHSIGFLHPLS
LDGGGGERVLWCALLAVKNLWPHSHIVLYSAWKRAGVNVSNAVAASRKRV
RSQFGLDLSEIDFEPVDISELAPLIDGERYTRFTLLLQAFGALRVGAKAY
AKQPVELLVDTANQSFALIIPKLLGAETMAYVHYPTISTDMLSVVRSRKQ
QFNNDTSIASSRVKTFVKVGYYRLFARLYGLSARFVDIKVANSSWTASHL
RALWKGKIHRIFPPCNVDMGVGNTDRENGLIVSLGQFRAEKNHELQLQMM
QVLRDEYPELKCRLVMIGGARNAKDRLRAAKLLQSAEKDSLPVSVRVNVS
SEELRRTLKRACIGVHSMRDEHFGISVVELQAYGLVVVAHRSGGVEKDIV
QNGRNGFLVRSAKEYAAAVAKVMGDDGLAARVREEGMKSCARFSDRVFCA
RFSQVVDENSRL*
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spliced messenger RNA

>Gvermi12450.t1 ID=Gvermi12450.t1|Name=Gvermi12450.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1389bp|location=Sequence derived from alignment at ScGOVlb_3404:4851526..4852914- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCTCCCACTACGCTTTGGTTGGTTATTCAGTGCTTCTGTTGTTGTT
GGCACTGCTAGGCTTTCGCAAGAATGTTCGTCGAAAACGCAAGGACCTTA
TCAAGTTTAGACACCGATCACATTCAATCGGGTTTCTTCATCCACTCAGT
CTGGACGGTGGTGGTGGCGAGCGTGTTCTCTGGTGCGCCTTACTTGCGGT
GAAGAACTTGTGGCCGCACAGTCACATCGTGCTCTATTCTGCGTGGAAGC
GTGCCGGAGTGAATGTTTCCAACGCAGTCGCTGCATCTCGTAAGCGAGTC
CGTTCGCAGTTCGGCCTGGACTTGTCCGAGATTGATTTCGAACCAGTAGA
TATATCAGAGCTTGCTCCTCTCATTGATGGCGAGAGATACACTCGTTTCA
CATTGTTGCTTCAGGCCTTTGGTGCTCTGCGTGTGGGGGCAAAGGCGTAT
GCGAAGCAACCAGTGGAGCTCCTTGTTGACACTGCCAACCAAAGCTTTGC
CCTAATAATACCCAAGCTGCTGGGTGCAGAGACAATGGCATATGTGCATT
ACCCTACTATTTCAACGGATATGCTCTCTGTGGTGCGTTCAAGGAAACAG
CAATTTAATAATGATACTAGCATCGCCTCTTCGCGCGTGAAGACATTTGT
GAAGGTTGGCTACTACAGATTGTTCGCAAGGTTGTATGGGTTGAGTGCAC
GGTTCGTAGACATCAAAGTGGCCAACTCGAGCTGGACAGCTTCGCACTTG
CGGGCTTTATGGAAAGGAAAGATTCATCGCATCTTTCCCCCCTGTAACGT
AGACATGGGTGTCGGTAATACTGATCGCGAAAATGGTTTGATCGTGTCTC
TAGGTCAGTTTCGCGCCGAGAAGAATCATGAATTGCAGTTGCAGATGATG
CAAGTGCTCCGGGATGAATATCCGGAGTTGAAGTGTAGGCTAGTGATGAT
TGGAGGCGCTCGCAATGCGAAGGATCGCCTCCGAGCGGCAAAGCTGCTGC
AAAGCGCCGAGAAAGATTCACTGCCGGTGTCAGTGAGAGTTAATGTCTCA
AGTGAAGAGTTGAGAAGGACGTTGAAACGCGCATGCATTGGTGTTCACAG
CATGCGGGACGAGCATTTCGGCATCTCTGTGGTGGAGCTGCAGGCTTACG
GACTAGTGGTTGTTGCGCATCGAAGCGGGGGAGTGGAAAAAGATATCGTG
CAAAACGGTCGAAACGGGTTTTTGGTGCGTTCGGCGAAGGAGTACGCCGC
GGCCGTTGCGAAGGTGATGGGTGACGATGGGTTGGCAGCGCGTGTGCGAG
AGGAAGGAATGAAGAGCTGCGCACGCTTCTCAGACAGGGTATTCTGCGCG
CGATTCAGTCAGGTGGTCGACGAGAACTCCCGACTGTAG
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protein sequence of Gvermi12450.t1

>Gvermi12450.t1 ID=Gvermi12450.t1|Name=Gvermi12450.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=463bp
MVSHYALVGYSVLLLLLALLGFRKNVRRKRKDLIKFRHRSHSIGFLHPLS
LDGGGGERVLWCALLAVKNLWPHSHIVLYSAWKRAGVNVSNAVAASRKRV
RSQFGLDLSEIDFEPVDISELAPLIDGERYTRFTLLLQAFGALRVGAKAY
AKQPVELLVDTANQSFALIIPKLLGAETMAYVHYPTISTDMLSVVRSRKQ
QFNNDTSIASSRVKTFVKVGYYRLFARLYGLSARFVDIKVANSSWTASHL
RALWKGKIHRIFPPCNVDMGVGNTDRENGLIVSLGQFRAEKNHELQLQMM
QVLRDEYPELKCRLVMIGGARNAKDRLRAAKLLQSAEKDSLPVSVRVNVS
SEELRRTLKRACIGVHSMRDEHFGISVVELQAYGLVVVAHRSGGVEKDIV
QNGRNGFLVRSAKEYAAAVAKVMGDDGLAARVREEGMKSCARFSDRVFCA
RFSQVVDENSRL*
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mRNA from alignment at ScGOVlb_3404:4851526..4852914-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12450.t1 ID=Gvermi12450.t1|Name=Gvermi12450.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1389bp|location=Sequence derived from alignment at ScGOVlb_3404:4851526..4852914- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCTCCCACTACGCTTTGGTTGGTTATTCAGTGCTTCTGTTGTTGTT
GGCACTGCTAGGCTTTCGCAAGAATGTTCGTCGAAAACGCAAGGACCTTA
TCAAGTTTAGACACCGATCACATTCAATCGGGTTTCTTCATCCACTCAGT
CTGGACGGTGGTGGTGGCGAGCGTGTTCTCTGGTGCGCCTTACTTGCGGT
GAAGAACTTGTGGCCGCACAGTCACATCGTGCTCTATTCTGCGTGGAAGC
GTGCCGGAGTGAATGTTTCCAACGCAGTCGCTGCATCTCGTAAGCGAGTC
CGTTCGCAGTTCGGCCTGGACTTGTCCGAGATTGATTTCGAACCAGTAGA
TATATCAGAGCTTGCTCCTCTCATTGATGGCGAGAGATACACTCGTTTCA
CATTGTTGCTTCAGGCCTTTGGTGCTCTGCGTGTGGGGGCAAAGGCGTAT
GCGAAGCAACCAGTGGAGCTCCTTGTTGACACTGCCAACCAAAGCTTTGC
CCTAATAATACCCAAGCTGCTGGGTGCAGAGACAATGGCATATGTGCATT
ACCCTACTATTTCAACGGATATGCTCTCTGTGGTGCGTTCAAGGAAACAG
CAATTTAATAATGATACTAGCATCGCCTCTTCGCGCGTGAAGACATTTGT
GAAGGTTGGCTACTACAGATTGTTCGCAAGGTTGTATGGGTTGAGTGCAC
GGTTCGTAGACATCAAAGTGGCCAACTCGAGCTGGACAGCTTCGCACTTG
CGGGCTTTATGGAAAGGAAAGATTCATCGCATCTTTCCCCCCTGTAACGT
AGACATGGGTGTCGGTAATACTGATCGCGAAAATGGTTTGATCGTGTCTC
TAGGTCAGTTTCGCGCCGAGAAGAATCATGAATTGCAGTTGCAGATGATG
CAAGTGCTCCGGGATGAATATCCGGAGTTGAAGTGTAGGCTAGTGATGAT
TGGAGGCGCTCGCAATGCGAAGGATCGCCTCCGAGCGGCAAAGCTGCTGC
AAAGCGCCGAGAAAGATTCACTGCCGGTGTCAGTGAGAGTTAATGTCTCA
AGTGAAGAGTTGAGAAGGACGTTGAAACGCGCATGCATTGGTGTTCACAG
CATGCGGGACGAGCATTTCGGCATCTCTGTGGTGGAGCTGCAGGCTTACG
GACTAGTGGTTGTTGCGCATCGAAGCGGGGGAGTGGAAAAAGATATCGTG
CAAAACGGTCGAAACGGGTTTTTGGTGCGTTCGGCGAAGGAGTACGCCGC
GGCCGTTGCGAAGGTGATGGGTGACGATGGGTTGGCAGCGCGTGTGCGAG
AGGAAGGAATGAAGAGCTGCGCACGCTTCTCAGACAGGGTATTCTGCGCG
CGATTCAGTCAGGTGGTCGACGAGAACTCCCGACTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4851526..4852914-

>Gvermi12450.t1 ID=Gvermi12450.t1|Name=Gvermi12450.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1389bp|location=Sequence derived from alignment at ScGOVlb_3404:4851526..4852914- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCTCCCACTACGCTTTGGTTGGTTATTCAGTGCTTCTGTTGTTGTT
GGCACTGCTAGGCTTTCGCAAGAATGTTCGTCGAAAACGCAAGGACCTTA
TCAAGTTTAGACACCGATCACATTCAATCGGGTTTCTTCATCCACTCAGT
CTGGACGGTGGTGGTGGCGAGCGTGTTCTCTGGTGCGCCTTACTTGCGGT
GAAGAACTTGTGGCCGCACAGTCACATCGTGCTCTATTCTGCGTGGAAGC
GTGCCGGAGTGAATGTTTCCAACGCAGTCGCTGCATCTCGTAAGCGAGTC
CGTTCGCAGTTCGGCCTGGACTTGTCCGAGATTGATTTCGAACCAGTAGA
TATATCAGAGCTTGCTCCTCTCATTGATGGCGAGAGATACACTCGTTTCA
CATTGTTGCTTCAGGCCTTTGGTGCTCTGCGTGTGGGGGCAAAGGCGTAT
GCGAAGCAACCAGTGGAGCTCCTTGTTGACACTGCCAACCAAAGCTTTGC
CCTAATAATACCCAAGCTGCTGGGTGCAGAGACAATGGCATATGTGCATT
ACCCTACTATTTCAACGGATATGCTCTCTGTGGTGCGTTCAAGGAAACAG
CAATTTAATAATGATACTAGCATCGCCTCTTCGCGCGTGAAGACATTTGT
GAAGGTTGGCTACTACAGATTGTTCGCAAGGTTGTATGGGTTGAGTGCAC
GGTTCGTAGACATCAAAGTGGCCAACTCGAGCTGGACAGCTTCGCACTTG
CGGGCTTTATGGAAAGGAAAGATTCATCGCATCTTTCCCCCCTGTAACGT
AGACATGGGTGTCGGTAATACTGATCGCGAAAATGGTTTGATCGTGTCTC
TAGGTCAGTTTCGCGCCGAGAAGAATCATGAATTGCAGTTGCAGATGATG
CAAGTGCTCCGGGATGAATATCCGGAGTTGAAGTGTAGGCTAGTGATGAT
TGGAGGCGCTCGCAATGCGAAGGATCGCCTCCGAGCGGCAAAGCTGCTGC
AAAGCGCCGAGAAAGATTCACTGCCGGTGTCAGTGAGAGTTAATGTCTCA
AGTGAAGAGTTGAGAAGGACGTTGAAACGCGCATGCATTGGTGTTCACAG
CATGCGGGACGAGCATTTCGGCATCTCTGTGGTGGAGCTGCAGGCTTACG
GACTAGTGGTTGTTGCGCATCGAAGCGGGGGAGTGGAAAAAGATATCGTG
CAAAACGGTCGAAACGGGTTTTTGGTGCGTTCGGCGAAGGAGTACGCCGC
GGCCGTTGCGAAGGTGATGGGTGACGATGGGTTGGCAGCGCGTGTGCGAG
AGGAAGGAATGAAGAGCTGCGCACGCTTCTCAGACAGGGTATTCTGCGCG
CGATTCAGTCAGGTGGTCGACGAGAACTCCCGACTGTAG
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