Gvermi12448.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12448.t2
Unique NameGvermi12448.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length310
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4843593..4844522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog240292.Ava_3341
Preferred namechlG
PFAMsUbiA
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00020
KEGG koko:K04040
KEGG ReactionR06284,R09067,R11514,R11517
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
Evalue3.98e-156
EggNOG OGsCOG0382@1|root,COG0382@2|Bacteria,1G2BD@1117|Cyanobacteria,1HJH8@1161|Nostocales
EC2.5.1.133,2.5.1.62
DescriptionTIGRFAM bacteriochlorophyll chlorophyll synthetase
COG categoryH
BiGG ReactioniJN678.chlG
BRITEko00000,ko00001,ko01000,ko01006
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12448Gvermi12448Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4843593..4844522 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12448.t2.start1Gvermi12448.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4843593..4843595 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12448.t2.CDS1Gvermi12448.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4843593..4844522 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12448.t2.exon1Gvermi12448.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4843593..4844522 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12448.t2.stop1Gvermi12448.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4844520..4844522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12448.t2Gvermi12448.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4843593..4844522 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12448.t2 ID=Gvermi12448.t2|Name=Gvermi12448.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=310bp
LLGIRGGSATTAKWRIRLQLMKPVTWVPLLWGVTCGAAASGNFTWTPEHV
AQALTCMVLAGPLLTGYTQTLNDWCDRDIDAINEPQRPIPSGAITEREVK
TQLVALLVAGIALSAAIDVWTAHDWPVNTALTLFGSFIAYIYSEPPLKLK
QNGWLGCYALGASYISLPWWCGHAAFGQLDWKVMVLTLFYSFAGLGIAIV
NDFKSVEGDRATGMQSLPVMFGIDTAKWICAGMIDVFQLLVAAVIYAIGE
HKYAAAILALVIPQVVFQFQYLLKDPIKNDVKYQAAAQPFLVIGILVTAL
AVGHHGPLL*
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spliced messenger RNA

>Gvermi12448.t2 ID=Gvermi12448.t2|Name=Gvermi12448.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=930bp|location=Sequence derived from alignment at ScGOVlb_3404:4843593..4844522+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ctgctcggcattcgcggcggctccgccaccacggccaagtggcgcatccg
cctgcagctcatgaagcccgtcacatgggtgccgctgctgtggggcgtca
cctgcggcgccgccgcctccggcaacttcacgtggacacccgagcacgtc
gcccaggcgctcacctgcatggtgctggccggcccgctgctcaccggcta
cactcagaccctcaacgactggtgcgatcgagacatcgacgccatcaacg
agccgcagcgccccattccgtccggcgccatcaccgagcgcgaggtcaag
acgcagctcgtcgcgctgctcgtcgccggcatcgcactcagcgccgccat
cgatgtgtggaccgcgcatgactggcccgtcaacaccgccCTCACCCTCT
TTGGCTCCTTCATCGCCTACATTTACTCGGAGCCGCCCCTCAAGCTCAAG
CAGAACGGCTGGCTCGGGTGCTACGCCCTGGGTGCCAGCTACATCAGCTT
GCCTTGGTGGTGCGGCCACGCCGCCTTCGGCCAGTTGGACTGGAAGGTCA
TGGTGCTCACGCTGTTTTACTCGTTTGCGGGGCTCGGCATCGCCATCGTC
AACGACTTTAAGAGCGTGGAGGGAGATCGCGCCACGGGCATGCAGAGCCT
GCCGGTCATGTTTGGCATTGACACCGCCAAATGGATTTGCGCCGGTATGA
TTGACGTATTTCAACTGCTTGTGGCTGCCGTAATTTACGCCATCGGCGAG
CATAAGTATGCTGCTGCCATTCTGGCATTGGTCATCCCGCAAGTGGTCTT
CCAGTTTCAGTATCTGCTCAAGGACCCCATCAAAAACGACGTCAAGTACC
AGGCCGCCGCTCAGCCGTTTTTGGTCATTGGCATCCTTGTCACAGCCCTT
GCTGTTGGACATCATGGGCCTCTGCTGTGA
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protein sequence of Gvermi12448.t2

>Gvermi12448.t2 ID=Gvermi12448.t2|Name=Gvermi12448.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=310bp
LLGIRGGSATTAKWRIRLQLMKPVTWVPLLWGVTCGAAASGNFTWTPEHV
AQALTCMVLAGPLLTGYTQTLNDWCDRDIDAINEPQRPIPSGAITEREVK
TQLVALLVAGIALSAAIDVWTAHDWPVNTALTLFGSFIAYIYSEPPLKLK
QNGWLGCYALGASYISLPWWCGHAAFGQLDWKVMVLTLFYSFAGLGIAIV
NDFKSVEGDRATGMQSLPVMFGIDTAKWICAGMIDVFQLLVAAVIYAIGE
HKYAAAILALVIPQVVFQFQYLLKDPIKNDVKYQAAAQPFLVIGILVTAL
AVGHHGPLL*
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mRNA from alignment at ScGOVlb_3404:4843593..4844522+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12448.t2 ID=Gvermi12448.t2|Name=Gvermi12448.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=930bp|location=Sequence derived from alignment at ScGOVlb_3404:4843593..4844522+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ctgctcggcattcgcggcggctccgccaccacggccaagtggcgcatccg
cctgcagctcatgaagcccgtcacatgggtgccgctgctgtggggcgtca
cctgcggcgccgccgcctccggcaacttcacgtggacacccgagcacgtc
gcccaggcgctcacctgcatggtgctggccggcccgctgctcaccggcta
cactcagaccctcaacgactggtgcgatcgagacatcgacgccatcaacg
agccgcagcgccccattccgtccggcgccatcaccgagcgcgaggtcaag
acgcagctcgtcgcgctgctcgtcgccggcatcgcactcagcgccgccat
cgatgtgtggaccgcgcatgactggcccgtcaacaccgccCTCACCCTCT
TTGGCTCCTTCATCGCCTACATTTACTCGGAGCCGCCCCTCAAGCTCAAG
CAGAACGGCTGGCTCGGGTGCTACGCCCTGGGTGCCAGCTACATCAGCTT
GCCTTGGTGGTGCGGCCACGCCGCCTTCGGCCAGTTGGACTGGAAGGTCA
TGGTGCTCACGCTGTTTTACTCGTTTGCGGGGCTCGGCATCGCCATCGTC
AACGACTTTAAGAGCGTGGAGGGAGATCGCGCCACGGGCATGCAGAGCCT
GCCGGTCATGTTTGGCATTGACACCGCCAAATGGATTTGCGCCGGTATGA
TTGACGTATTTCAACTGCTTGTGGCTGCCGTAATTTACGCCATCGGCGAG
CATAAGTATGCTGCTGCCATTCTGGCATTGGTCATCCCGCAAGTGGTCTT
CCAGTTTCAGTATCTGCTCAAGGACCCCATCAAAAACGACGTCAAGTACC
AGGCCGCCGCTCAGCCGTTTTTGGTCATTGGCATCCTTGTCACAGCCCTT
GCTGTTGGACATCATGGGCCTCTGCTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4843593..4844522+

>Gvermi12448.t2 ID=Gvermi12448.t2|Name=Gvermi12448.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=930bp|location=Sequence derived from alignment at ScGOVlb_3404:4843593..4844522+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ctgctcggcattcgcggcggctccgccaccacggccaagtggcgcatccg
cctgcagctcatgaagcccgtcacatgggtgccgctgctgtggggcgtca
cctgcggcgccgccgcctccggcaacttcacgtggacacccgagcacgtc
gcccaggcgctcacctgcatggtgctggccggcccgctgctcaccggcta
cactcagaccctcaacgactggtgcgatcgagacatcgacgccatcaacg
agccgcagcgccccattccgtccggcgccatcaccgagcgcgaggtcaag
acgcagctcgtcgcgctgctcgtcgccggcatcgcactcagcgccgccat
cgatgtgtggaccgcgcatgactggcccgtcaacaccgccCTCACCCTCT
TTGGCTCCTTCATCGCCTACATTTACTCGGAGCCGCCCCTCAAGCTCAAG
CAGAACGGCTGGCTCGGGTGCTACGCCCTGGGTGCCAGCTACATCAGCTT
GCCTTGGTGGTGCGGCCACGCCGCCTTCGGCCAGTTGGACTGGAAGGTCA
TGGTGCTCACGCTGTTTTACTCGTTTGCGGGGCTCGGCATCGCCATCGTC
AACGACTTTAAGAGCGTGGAGGGAGATCGCGCCACGGGCATGCAGAGCCT
GCCGGTCATGTTTGGCATTGACACCGCCAAATGGATTTGCGCCGGTATGA
TTGACGTATTTCAACTGCTTGTGGCTGCCGTAATTTACGCCATCGGCGAG
CATAAGTATGCTGCTGCCATTCTGGCATTGGTCATCCCGCAAGTGGTCTT
CCAGTTTCAGTATCTGCTCAAGGACCCCATCAAAAACGACGTCAAGTACC
AGGCCGCCGCTCAGCCGTTTTTGGTCATTGGCATCCTTGTCACAGCCCTT
GCTGTTGGACATCATGGGCCTCTGCTGTGA
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