Gvermi12448.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12448.t1
Unique NameGvermi12448.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length254
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4843761..4844522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog99598.Cal7507_5244
Preferred namechlG
PFAMsUbiA
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00020
KEGG koko:K04040
KEGG ReactionR06284,R09067,R11514,R11517
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
Evalue1.44e-127
EggNOG OGsCOG0382@1|root,COG0382@2|Bacteria,1G2BD@1117|Cyanobacteria,1HJH8@1161|Nostocales
EC2.5.1.133,2.5.1.62
DescriptionTIGRFAM bacteriochlorophyll chlorophyll synthetase
COG categoryH
BiGG ReactioniJN678.chlG
BRITEko00000,ko00001,ko01000,ko01006
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12448Gvermi12448Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4843593..4844522 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12448.t1.start1Gvermi12448.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4843761..4843763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12448.t1.CDS1Gvermi12448.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4843761..4844522 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12448.t1.exon1Gvermi12448.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4843761..4844522 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12448.t1.stop1Gvermi12448.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4844520..4844522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12448.t1Gvermi12448.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4843761..4844522 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12448.t1 ID=Gvermi12448.t1|Name=Gvermi12448.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=254bp
MVLAGPLLTGYTQTLNDWCDRDIDAINEPQRPIPSGAITEREVKTQLVAL
LVAGIALSAAIDVWTAHDWPVNTALTLFGSFIAYIYSEPPLKLKQNGWLG
CYALGASYISLPWWCGHAAFGQLDWKVMVLTLFYSFAGLGIAIVNDFKSV
EGDRATGMQSLPVMFGIDTAKWICAGMIDVFQLLVAAVIYAIGEHKYAAA
ILALVIPQVVFQFQYLLKDPIKNDVKYQAAAQPFLVIGILVTALAVGHHG
PLL*
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spliced messenger RNA

>Gvermi12448.t1 ID=Gvermi12448.t1|Name=Gvermi12448.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=762bp|location=Sequence derived from alignment at ScGOVlb_3404:4843761..4844522+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atggtgctggccggcccgctgctcaccggctacactcagaccctcaacga
ctggtgcgatcgagacatcgacgccatcaacgagccgcagcgccccattc
cgtccggcgccatcaccgagcgcgaggtcaagacgcagctcgtcgcgctg
ctcgtcgccggcatcgcactcagcgccgccatcgatgtgtggaccgcgca
tgactggcccgtcaacaccgccCTCACCCTCTTTGGCTCCTTCATCGCCT
ACATTTACTCGGAGCCGCCCCTCAAGCTCAAGCAGAACGGCTGGCTCGGG
TGCTACGCCCTGGGTGCCAGCTACATCAGCTTGCCTTGGTGGTGCGGCCA
CGCCGCCTTCGGCCAGTTGGACTGGAAGGTCATGGTGCTCACGCTGTTTT
ACTCGTTTGCGGGGCTCGGCATCGCCATCGTCAACGACTTTAAGAGCGTG
GAGGGAGATCGCGCCACGGGCATGCAGAGCCTGCCGGTCATGTTTGGCAT
TGACACCGCCAAATGGATTTGCGCCGGTATGATTGACGTATTTCAACTGC
TTGTGGCTGCCGTAATTTACGCCATCGGCGAGCATAAGTATGCTGCTGCC
ATTCTGGCATTGGTCATCCCGCAAGTGGTCTTCCAGTTTCAGTATCTGCT
CAAGGACCCCATCAAAAACGACGTCAAGTACCAGGCCGCCGCTCAGCCGT
TTTTGGTCATTGGCATCCTTGTCACAGCCCTTGCTGTTGGACATCATGGG
CCTCTGCTGTGA
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protein sequence of Gvermi12448.t1

>Gvermi12448.t1 ID=Gvermi12448.t1|Name=Gvermi12448.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=254bp
MVLAGPLLTGYTQTLNDWCDRDIDAINEPQRPIPSGAITEREVKTQLVAL
LVAGIALSAAIDVWTAHDWPVNTALTLFGSFIAYIYSEPPLKLKQNGWLG
CYALGASYISLPWWCGHAAFGQLDWKVMVLTLFYSFAGLGIAIVNDFKSV
EGDRATGMQSLPVMFGIDTAKWICAGMIDVFQLLVAAVIYAIGEHKYAAA
ILALVIPQVVFQFQYLLKDPIKNDVKYQAAAQPFLVIGILVTALAVGHHG
PLL*
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mRNA from alignment at ScGOVlb_3404:4843761..4844522+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12448.t1 ID=Gvermi12448.t1|Name=Gvermi12448.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=762bp|location=Sequence derived from alignment at ScGOVlb_3404:4843761..4844522+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atggtgctggccggcccgctgctcaccggctacactcagaccctcaacga
ctggtgcgatcgagacatcgacgccatcaacgagccgcagcgccccattc
cgtccggcgccatcaccgagcgcgaggtcaagacgcagctcgtcgcgctg
ctcgtcgccggcatcgcactcagcgccgccatcgatgtgtggaccgcgca
tgactggcccgtcaacaccgccCTCACCCTCTTTGGCTCCTTCATCGCCT
ACATTTACTCGGAGCCGCCCCTCAAGCTCAAGCAGAACGGCTGGCTCGGG
TGCTACGCCCTGGGTGCCAGCTACATCAGCTTGCCTTGGTGGTGCGGCCA
CGCCGCCTTCGGCCAGTTGGACTGGAAGGTCATGGTGCTCACGCTGTTTT
ACTCGTTTGCGGGGCTCGGCATCGCCATCGTCAACGACTTTAAGAGCGTG
GAGGGAGATCGCGCCACGGGCATGCAGAGCCTGCCGGTCATGTTTGGCAT
TGACACCGCCAAATGGATTTGCGCCGGTATGATTGACGTATTTCAACTGC
TTGTGGCTGCCGTAATTTACGCCATCGGCGAGCATAAGTATGCTGCTGCC
ATTCTGGCATTGGTCATCCCGCAAGTGGTCTTCCAGTTTCAGTATCTGCT
CAAGGACCCCATCAAAAACGACGTCAAGTACCAGGCCGCCGCTCAGCCGT
TTTTGGTCATTGGCATCCTTGTCACAGCCCTTGCTGTTGGACATCATGGG
CCTCTGCTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4843761..4844522+

>Gvermi12448.t1 ID=Gvermi12448.t1|Name=Gvermi12448.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=762bp|location=Sequence derived from alignment at ScGOVlb_3404:4843761..4844522+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atggtgctggccggcccgctgctcaccggctacactcagaccctcaacga
ctggtgcgatcgagacatcgacgccatcaacgagccgcagcgccccattc
cgtccggcgccatcaccgagcgcgaggtcaagacgcagctcgtcgcgctg
ctcgtcgccggcatcgcactcagcgccgccatcgatgtgtggaccgcgca
tgactggcccgtcaacaccgccCTCACCCTCTTTGGCTCCTTCATCGCCT
ACATTTACTCGGAGCCGCCCCTCAAGCTCAAGCAGAACGGCTGGCTCGGG
TGCTACGCCCTGGGTGCCAGCTACATCAGCTTGCCTTGGTGGTGCGGCCA
CGCCGCCTTCGGCCAGTTGGACTGGAAGGTCATGGTGCTCACGCTGTTTT
ACTCGTTTGCGGGGCTCGGCATCGCCATCGTCAACGACTTTAAGAGCGTG
GAGGGAGATCGCGCCACGGGCATGCAGAGCCTGCCGGTCATGTTTGGCAT
TGACACCGCCAAATGGATTTGCGCCGGTATGATTGACGTATTTCAACTGC
TTGTGGCTGCCGTAATTTACGCCATCGGCGAGCATAAGTATGCTGCTGCC
ATTCTGGCATTGGTCATCCCGCAAGTGGTCTTCCAGTTTCAGTATCTGCT
CAAGGACCCCATCAAAAACGACGTCAAGTACCAGGCCGCCGCTCAGCCGT
TTTTGGTCATTGGCATCCTTGTCACAGCCCTTGCTGTTGGACATCATGGG
CCTCTGCTGTGA
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