Gvermi12445.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12445.t1
Unique NameGvermi12445.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length206
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4836548..4837165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog745718.JADT01000028_gene2565
Max annot lvl976|Bacteroidetes
Evalue7.15e-12
EggNOG OGsCOG5492@1|root,COG5492@2|Bacteria,4NTD6@976|Bacteroidetes,1I5EC@117743|Flavobacteriia
DescriptionPkd domain containing protein
COG categoryN
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12445Gvermi12445Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4836548..4837165 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12445.t1.start1Gvermi12445.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4836548..4836550 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12445.t1.CDS1Gvermi12445.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4836548..4837165 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12445.t1.exon1Gvermi12445.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4836548..4837165 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12445.t1.stop1Gvermi12445.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4837163..4837165 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12445.t1Gvermi12445.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4836548..4837165 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12445.t1 ID=Gvermi12445.t1|Name=Gvermi12445.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=206bp
MDSEQRGPGGGWHFDTALRAFLGSGYLSYKPYSAFGGTEPKPSSMFDARI
KSFFFTVNVSGTYRLALRSAAPHPTEHNDVWVALPESGALKRRFGAESHL
TWPAARDGAGGVQLFPEHWFKLYQNTGGWAWHWGGKTVDHNGHDVLTRTL
LADGTWYSVRIAGRSTQFAIDRITLFLCEGGECDDGSPRFNAATKWRSGA
QSACE*
back to top

spliced messenger RNA

>Gvermi12445.t1 ID=Gvermi12445.t1|Name=Gvermi12445.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=618bp|location=Sequence derived from alignment at ScGOVlb_3404:4836548..4837165+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atggacagcgagcagcgcgGGCCGGGCGGCGGCTGGCACTTCGACACGGC
GCTGCGCGCCTTCCTCGGCAGCGGCTACCTCAGCTACAAGCCGTACTCGG
CGTTCGGCGGCACGGAGCCCAAGCCGAGCTCCATGTTCGACGCGCGCATC
AAGAGCTTCTTCTTCACCGTCAACGTGAGCGGCACGTACCGCTTGGCGCT
GCGCTCGGCCGCGCCGCACCCCACGGAGCACAACGACGTGTGGGTGGCGC
TGCCGGAGAGCGGCGCGCTCAAGCGCCGCTTCGGCGCCGAGTCGCACCTC
ACGTGGCCGGCCGCGCGCGACGGCGCGGGCGGCGTGCAGCTCTTCCCCGA
GCACTGGTTCAAGCTGTACCAGAACACCGGCGGCTGGGCGTGGCACTGGG
GCGGCAAGACCGTGGACCACAACGGCCACGACGTGCTCACGCGCACGCTG
CTCGCCGACGGCACGTGGTACTCGGTGCGCATCGCCGGCCGCTCCACGCA
GTTTGCCATCGACCGCATCACGCTGTTCCTGTGCGAAGGCGGCGAGTGCG
ACGACGGCTCGCCGCGCTTCAACGCCGCCACCAAGTGgcgcagcggcgcg
cagagcgcgtgcgagtga
back to top

protein sequence of Gvermi12445.t1

>Gvermi12445.t1 ID=Gvermi12445.t1|Name=Gvermi12445.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=206bp
MDSEQRGPGGGWHFDTALRAFLGSGYLSYKPYSAFGGTEPKPSSMFDARI
KSFFFTVNVSGTYRLALRSAAPHPTEHNDVWVALPESGALKRRFGAESHL
TWPAARDGAGGVQLFPEHWFKLYQNTGGWAWHWGGKTVDHNGHDVLTRTL
LADGTWYSVRIAGRSTQFAIDRITLFLCEGGECDDGSPRFNAATKWRSGA
QSACE*
back to top

mRNA from alignment at ScGOVlb_3404:4836548..4837165+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12445.t1 ID=Gvermi12445.t1|Name=Gvermi12445.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=618bp|location=Sequence derived from alignment at ScGOVlb_3404:4836548..4837165+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atggacagcgagcagcgcgGGCCGGGCGGCGGCTGGCACTTCGACACGGC
GCTGCGCGCCTTCCTCGGCAGCGGCTACCTCAGCTACAAGCCGTACTCGG
CGTTCGGCGGCACGGAGCCCAAGCCGAGCTCCATGTTCGACGCGCGCATC
AAGAGCTTCTTCTTCACCGTCAACGTGAGCGGCACGTACCGCTTGGCGCT
GCGCTCGGCCGCGCCGCACCCCACGGAGCACAACGACGTGTGGGTGGCGC
TGCCGGAGAGCGGCGCGCTCAAGCGCCGCTTCGGCGCCGAGTCGCACCTC
ACGTGGCCGGCCGCGCGCGACGGCGCGGGCGGCGTGCAGCTCTTCCCCGA
GCACTGGTTCAAGCTGTACCAGAACACCGGCGGCTGGGCGTGGCACTGGG
GCGGCAAGACCGTGGACCACAACGGCCACGACGTGCTCACGCGCACGCTG
CTCGCCGACGGCACGTGGTACTCGGTGCGCATCGCCGGCCGCTCCACGCA
GTTTGCCATCGACCGCATCACGCTGTTCCTGTGCGAAGGCGGCGAGTGCG
ACGACGGCTCGCCGCGCTTCAACGCCGCCACCAAGTGgcgcagcggcgcg
cagagcgcgtgcgagtga
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:4836548..4837165+

>Gvermi12445.t1 ID=Gvermi12445.t1|Name=Gvermi12445.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=618bp|location=Sequence derived from alignment at ScGOVlb_3404:4836548..4837165+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atggacagcgagcagcgcgGGCCGGGCGGCGGCTGGCACTTCGACACGGC
GCTGCGCGCCTTCCTCGGCAGCGGCTACCTCAGCTACAAGCCGTACTCGG
CGTTCGGCGGCACGGAGCCCAAGCCGAGCTCCATGTTCGACGCGCGCATC
AAGAGCTTCTTCTTCACCGTCAACGTGAGCGGCACGTACCGCTTGGCGCT
GCGCTCGGCCGCGCCGCACCCCACGGAGCACAACGACGTGTGGGTGGCGC
TGCCGGAGAGCGGCGCGCTCAAGCGCCGCTTCGGCGCCGAGTCGCACCTC
ACGTGGCCGGCCGCGCGCGACGGCGCGGGCGGCGTGCAGCTCTTCCCCGA
GCACTGGTTCAAGCTGTACCAGAACACCGGCGGCTGGGCGTGGCACTGGG
GCGGCAAGACCGTGGACCACAACGGCCACGACGTGCTCACGCGCACGCTG
CTCGCCGACGGCACGTGGTACTCGGTGCGCATCGCCGGCCGCTCCACGCA
GTTTGCCATCGACCGCATCACGCTGTTCCTGTGCGAAGGCGGCGAGTGCG
ACGACGGCTCGCCGCGCTTCAACGCCGCCACCAAGTGgcgcagcggcgcg
cagagcgcgtgcgagtga
back to top