Gvermi12440.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12440.t2
Unique NameGvermi12440.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length554
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4754829..4756490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705580.1
PFAMsMFS_1
Max annot lvl2759|Eukaryota
KEGG koko:K15378
KEGG TC2.A.2.4,2.A.2.6
Evalue7.05e-132
EggNOG OGsKOG0637@1|root,KOG0637@2759|Eukaryota
Descriptionsucrose transmembrane transporter activity
COG categoryS
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12440Gvermi12440Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4754829..4756490 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12440.t2.stop1Gvermi12440.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4754829..4754831 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12440.t2.CDS1Gvermi12440.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4754829..4756490 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12440.t2.exon1Gvermi12440.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4754829..4756490 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12440.t2.start1Gvermi12440.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4756488..4756490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12440.t2Gvermi12440.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4754829..4756490 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12440.t2 ID=Gvermi12440.t2|Name=Gvermi12440.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=554bp
MEIHPKMGVPIVHSLSSPAIQKTYAEPTPMKQWRIASCAIAMAGIQVCYA
AQINLGTAQLLLLGLSERAVSLAWLAGPLSGLIVQPIVGHVSDGCTHPLG
RRRPFLIAGTIFTSCALLLFSHAGKVAYILSGSPSPSIALALAICAFFAL
DFSIQAIQAPLRALITDVVPQPQRALANSYIGVFTGVGNLVGGLLAGMEL
KTIMPFFKRDVEALFTLAALILVITVAATVFTTHEQRLRPPGTVVFPDGT
TRSSPYRSLSSITPLVHQRMSHAHQSFAPGWRGAVQALKGVPRPFWQVFA
VQLCTWCGFFTLFVYVNTWVGRNVFLGDGSAPEGSATREIFERGVRLGGK
GNALTALITLAYSLVLPQLLHAFGVIPVYAFSQLVEAICLMAAVTIRGIP
GQLAPSWMLRFAALTDIGMFGIVWATTMSIPWTLIGNALESDHRYARRLG
LFTTLFNASQSFPQLLVAFGAPLILNIWQDDPSGVMFVGGIFALVGAVLV
VALRVNVYAKDEEEEDEEDGELEEDEEEELEVQRGYALRVSQSFSMEAFF
RRS*
back to top

spliced messenger RNA

>Gvermi12440.t2 ID=Gvermi12440.t2|Name=Gvermi12440.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1662bp|location=Sequence derived from alignment at ScGOVlb_3404:4754829..4756490- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGATTCACCCCAAGATGGGCGTCCCCATCGTGCACTCTCTCTCGTC
GCCGGCCATTCAGAAAACGTATGCCGAGCCCACGCCCATGAAGCAATGGC
GCATCGCCTCTTGCGCAATCGCCATGGCCGGCATTCAGGTGTGCTACGCC
GCCCAGATTAACCTCGGAACCGCGCAGCTGCTTTTGCTCGGCCTCAGCGA
GCGCGCCGTGTCTCTGGCGTGGCTGGCTGGTCCGCTCTCCGGTCTCATAG
TGCAGCCCATTGTGGGGCACGTTTCGGACGGTTGCACTCATCCGCTGGGA
AGGCGGCGCCCGTTCCTCATCGCCGGCACCATCTTCACCTCCTGCGCGTT
GCTGCTGTTCTCGCACGCGGGGAAGGTGGCGTACATTCTTTCCGGATCTC
CCTCGCCATCCATTGCGCTGGCGCTGGCCATCTGCGCGTTTTTCGCGCTG
GACTTTTCGATACAGGCCATCCAGGCGCCGCTGCGCGCGCTCATCACCGA
TGTGGTGCCCCAGCCGCAGCGCGCGCTCGCCAACTCGTACATCGGAGTGT
TCACGGGCGTGGGCAACCTCGTGGGCGGGCTGCTGGCGGGCATGGAGCTC
AAGACCATAATGCCGTTTTTCAAGCGCGACGTGGAGGCGCTTTTCACGCT
TGCTGCGCTCATTCTTGTCATTACCGTCGCGGCCACAGTGTTCACGACGC
ATGAGCAGCGTCTGCGCCCTCCCGGTACCGTCGTGTTCCCCGATGGCACC
ACGCGGAGCTCCCCGTACCGATCGCTCTCTTCCATCACACCGCTGGTGCA
CCAACGCATGTCTCACGCGCACCAGTCGTTCGCGCCGGGGTGGCGGGGCG
CCGTGCAGGCGCTCAAGGGCGTGCCGCGCCCGTTCTGGCAGGTGTTCGCG
GTGCAGCTGTGCACGTGGTGCGGGTTTTTCACGTTGTTTGTGTACGTGAA
TACGTGGGTTGGGCGCAATGTGTTCTTGGGCGACGGAAGCGCGCCGGAGG
GGAGCGCCACGCGCGAAATCTTCGAACGCGGGGTGAGACTCGGCGGAAAG
GGCAATGCGCTCACGGCGCTCATCACGCTGGCGTACTCGCTGGTGCTGCC
TCAGCTGCTGCACGCGTTCGGGGTGATTCCGGTGTATGCGTTCAGTCAGC
TGGTGGAGGCGATTTGCTTGATGGCGGCCGTGACGATCCGCGGCATTCCG
GGTCAGCTTGCGCCGTCGTGGATGTTGCGGTTTGCGGCGTTGACGGACAT
TGGCATGTTTGGAATTGTGTGGGCGACGACGATGAGCATTCCCTGGACGC
TAATTGGAAACGCGCTGGAGAGCGATCATCGGTACGCACGACGGCTGGGT
CTGTTCACGACGCTTTTCAACGCCAGTCAGAGTTTTCCGCAGCTGCTGGT
GGCATTCGGGGCGCCGCTGATTCTGAACATATGGCAGGACGATCCATCTG
GGGTGATGTTTGTGGGTGGAATTTTTGCGCTGGTGGGCGCCGTGCTGGTC
GTTGCACTCCGGGTGAATGTGTACGCCAAGGACGAGGAGGAAGAGGACGA
GGAGGACGGCGAGTTGGAGGAGGACGAAGAAGAGGAACTGGAGGTACAAC
GTGGGTACGCGCTGCGCGTCAGTCAGTCGTTCTCCATGGAGGCGTTCTTC
AGGCGCTCCTGA
back to top

protein sequence of Gvermi12440.t2

>Gvermi12440.t2 ID=Gvermi12440.t2|Name=Gvermi12440.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=554bp
MEIHPKMGVPIVHSLSSPAIQKTYAEPTPMKQWRIASCAIAMAGIQVCYA
AQINLGTAQLLLLGLSERAVSLAWLAGPLSGLIVQPIVGHVSDGCTHPLG
RRRPFLIAGTIFTSCALLLFSHAGKVAYILSGSPSPSIALALAICAFFAL
DFSIQAIQAPLRALITDVVPQPQRALANSYIGVFTGVGNLVGGLLAGMEL
KTIMPFFKRDVEALFTLAALILVITVAATVFTTHEQRLRPPGTVVFPDGT
TRSSPYRSLSSITPLVHQRMSHAHQSFAPGWRGAVQALKGVPRPFWQVFA
VQLCTWCGFFTLFVYVNTWVGRNVFLGDGSAPEGSATREIFERGVRLGGK
GNALTALITLAYSLVLPQLLHAFGVIPVYAFSQLVEAICLMAAVTIRGIP
GQLAPSWMLRFAALTDIGMFGIVWATTMSIPWTLIGNALESDHRYARRLG
LFTTLFNASQSFPQLLVAFGAPLILNIWQDDPSGVMFVGGIFALVGAVLV
VALRVNVYAKDEEEEDEEDGELEEDEEEELEVQRGYALRVSQSFSMEAFF
RRS*
back to top

mRNA from alignment at ScGOVlb_3404:4754829..4756490-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12440.t2 ID=Gvermi12440.t2|Name=Gvermi12440.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1662bp|location=Sequence derived from alignment at ScGOVlb_3404:4754829..4756490- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGATTCACCCCAAGATGGGCGTCCCCATCGTGCACTCTCTCTCGTC
GCCGGCCATTCAGAAAACGTATGCCGAGCCCACGCCCATGAAGCAATGGC
GCATCGCCTCTTGCGCAATCGCCATGGCCGGCATTCAGGTGTGCTACGCC
GCCCAGATTAACCTCGGAACCGCGCAGCTGCTTTTGCTCGGCCTCAGCGA
GCGCGCCGTGTCTCTGGCGTGGCTGGCTGGTCCGCTCTCCGGTCTCATAG
TGCAGCCCATTGTGGGGCACGTTTCGGACGGTTGCACTCATCCGCTGGGA
AGGCGGCGCCCGTTCCTCATCGCCGGCACCATCTTCACCTCCTGCGCGTT
GCTGCTGTTCTCGCACGCGGGGAAGGTGGCGTACATTCTTTCCGGATCTC
CCTCGCCATCCATTGCGCTGGCGCTGGCCATCTGCGCGTTTTTCGCGCTG
GACTTTTCGATACAGGCCATCCAGGCGCCGCTGCGCGCGCTCATCACCGA
TGTGGTGCCCCAGCCGCAGCGCGCGCTCGCCAACTCGTACATCGGAGTGT
TCACGGGCGTGGGCAACCTCGTGGGCGGGCTGCTGGCGGGCATGGAGCTC
AAGACCATAATGCCGTTTTTCAAGCGCGACGTGGAGGCGCTTTTCACGCT
TGCTGCGCTCATTCTTGTCATTACCGTCGCGGCCACAGTGTTCACGACGC
ATGAGCAGCGTCTGCGCCCTCCCGGTACCGTCGTGTTCCCCGATGGCACC
ACGCGGAGCTCCCCGTACCGATCGCTCTCTTCCATCACACCGCTGGTGCA
CCAACGCATGTCTCACGCGCACCAGTCGTTCGCGCCGGGGTGGCGGGGCG
CCGTGCAGGCGCTCAAGGGCGTGCCGCGCCCGTTCTGGCAGGTGTTCGCG
GTGCAGCTGTGCACGTGGTGCGGGTTTTTCACGTTGTTTGTGTACGTGAA
TACGTGGGTTGGGCGCAATGTGTTCTTGGGCGACGGAAGCGCGCCGGAGG
GGAGCGCCACGCGCGAAATCTTCGAACGCGGGGTGAGACTCGGCGGAAAG
GGCAATGCGCTCACGGCGCTCATCACGCTGGCGTACTCGCTGGTGCTGCC
TCAGCTGCTGCACGCGTTCGGGGTGATTCCGGTGTATGCGTTCAGTCAGC
TGGTGGAGGCGATTTGCTTGATGGCGGCCGTGACGATCCGCGGCATTCCG
GGTCAGCTTGCGCCGTCGTGGATGTTGCGGTTTGCGGCGTTGACGGACAT
TGGCATGTTTGGAATTGTGTGGGCGACGACGATGAGCATTCCCTGGACGC
TAATTGGAAACGCGCTGGAGAGCGATCATCGGTACGCACGACGGCTGGGT
CTGTTCACGACGCTTTTCAACGCCAGTCAGAGTTTTCCGCAGCTGCTGGT
GGCATTCGGGGCGCCGCTGATTCTGAACATATGGCAGGACGATCCATCTG
GGGTGATGTTTGTGGGTGGAATTTTTGCGCTGGTGGGCGCCGTGCTGGTC
GTTGCACTCCGGGTGAATGTGTACGCCAAGGACGAGGAGGAAGAGGACGA
GGAGGACGGCGAGTTGGAGGAGGACGAAGAAGAGGAACTGGAGGTACAAC
GTGGGTACGCGCTGCGCGTCAGTCAGTCGTTCTCCATGGAGGCGTTCTTC
AGGCGCTCCTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:4754829..4756490-

>Gvermi12440.t2 ID=Gvermi12440.t2|Name=Gvermi12440.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1662bp|location=Sequence derived from alignment at ScGOVlb_3404:4754829..4756490- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGATTCACCCCAAGATGGGCGTCCCCATCGTGCACTCTCTCTCGTC
GCCGGCCATTCAGAAAACGTATGCCGAGCCCACGCCCATGAAGCAATGGC
GCATCGCCTCTTGCGCAATCGCCATGGCCGGCATTCAGGTGTGCTACGCC
GCCCAGATTAACCTCGGAACCGCGCAGCTGCTTTTGCTCGGCCTCAGCGA
GCGCGCCGTGTCTCTGGCGTGGCTGGCTGGTCCGCTCTCCGGTCTCATAG
TGCAGCCCATTGTGGGGCACGTTTCGGACGGTTGCACTCATCCGCTGGGA
AGGCGGCGCCCGTTCCTCATCGCCGGCACCATCTTCACCTCCTGCGCGTT
GCTGCTGTTCTCGCACGCGGGGAAGGTGGCGTACATTCTTTCCGGATCTC
CCTCGCCATCCATTGCGCTGGCGCTGGCCATCTGCGCGTTTTTCGCGCTG
GACTTTTCGATACAGGCCATCCAGGCGCCGCTGCGCGCGCTCATCACCGA
TGTGGTGCCCCAGCCGCAGCGCGCGCTCGCCAACTCGTACATCGGAGTGT
TCACGGGCGTGGGCAACCTCGTGGGCGGGCTGCTGGCGGGCATGGAGCTC
AAGACCATAATGCCGTTTTTCAAGCGCGACGTGGAGGCGCTTTTCACGCT
TGCTGCGCTCATTCTTGTCATTACCGTCGCGGCCACAGTGTTCACGACGC
ATGAGCAGCGTCTGCGCCCTCCCGGTACCGTCGTGTTCCCCGATGGCACC
ACGCGGAGCTCCCCGTACCGATCGCTCTCTTCCATCACACCGCTGGTGCA
CCAACGCATGTCTCACGCGCACCAGTCGTTCGCGCCGGGGTGGCGGGGCG
CCGTGCAGGCGCTCAAGGGCGTGCCGCGCCCGTTCTGGCAGGTGTTCGCG
GTGCAGCTGTGCACGTGGTGCGGGTTTTTCACGTTGTTTGTGTACGTGAA
TACGTGGGTTGGGCGCAATGTGTTCTTGGGCGACGGAAGCGCGCCGGAGG
GGAGCGCCACGCGCGAAATCTTCGAACGCGGGGTGAGACTCGGCGGAAAG
GGCAATGCGCTCACGGCGCTCATCACGCTGGCGTACTCGCTGGTGCTGCC
TCAGCTGCTGCACGCGTTCGGGGTGATTCCGGTGTATGCGTTCAGTCAGC
TGGTGGAGGCGATTTGCTTGATGGCGGCCGTGACGATCCGCGGCATTCCG
GGTCAGCTTGCGCCGTCGTGGATGTTGCGGTTTGCGGCGTTGACGGACAT
TGGCATGTTTGGAATTGTGTGGGCGACGACGATGAGCATTCCCTGGACGC
TAATTGGAAACGCGCTGGAGAGCGATCATCGGTACGCACGACGGCTGGGT
CTGTTCACGACGCTTTTCAACGCCAGTCAGAGTTTTCCGCAGCTGCTGGT
GGCATTCGGGGCGCCGCTGATTCTGAACATATGGCAGGACGATCCATCTG
GGGTGATGTTTGTGGGTGGAATTTTTGCGCTGGTGGGCGCCGTGCTGGTC
GTTGCACTCCGGGTGAATGTGTACGCCAAGGACGAGGAGGAAGAGGACGA
GGAGGACGGCGAGTTGGAGGAGGACGAAGAAGAGGAACTGGAGGTACAAC
GTGGGTACGCGCTGCGCGTCAGTCAGTCGTTCTCCATGGAGGCGTTCTTC
AGGCGCTCCTGA
back to top