Gvermi12439.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12439.t2
Unique NameGvermi12439.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length243
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4751038..4751766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12439Gvermi12439Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4751038..4754485 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12439.t2.stop1Gvermi12439.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4751038..4751040 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12439.t2.CDS1Gvermi12439.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4751038..4751766 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12439.t2.exon1Gvermi12439.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4751038..4751766 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12439.t2.start1Gvermi12439.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4751764..4751766 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12439.t2Gvermi12439.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4751038..4751766 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12439.t2 ID=Gvermi12439.t2|Name=Gvermi12439.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=243bp
LLRRHAARRLVYTGHVPLAFGLAPALLRALPPGRVRIVRLRRDRIATAVS
LMALGPEREDPWGESSPPPASNASRVAAAAAAAAAAFALPPPAPTARWFP
RPTDAFVRLRVSPAAWRAFNRFQRWLWYVDDVECRWQALLHASAHRFSWM
EESLDTLGAMDGGRAWARLADFIGVDVDWRRVATRHNSIQHKQRRKTDAS
EAQLRQWDEQYRQLVGECALTDSLSYGWRHFALRPLQPRPAR*
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spliced messenger RNA

>Gvermi12439.t2 ID=Gvermi12439.t2|Name=Gvermi12439.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=729bp|location=Sequence derived from alignment at ScGOVlb_3404:4751038..4751766- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCTGCGCCGCCACGCCGCCCGCCGCCTCGTGTACACCGGCCACGTCCC
GCTCGCCTTCGGCCTCGCCCCCGCCCTGCTGCGCGCCCTGCCGCCCGGCC
GCGTGCGCATCGTGCGCCTGCGCCGCGACCGCATCGCCACCGCCGTGTCG
CTCATGGCGCTCGGCCCGGAGCGCGAGGACCCGTGGGGCGAGTCGTCGCC
GCCGCCCGCCTCCAACGCCTCGCGTGTCGCCGCCGCCGCCGCCGCCGCCG
CCGCCGCGTTCGCGCTGCCGCCGCCCGCCCCTACCGCCCGCTGGTTCCCG
CGCCCCACCGACGCCTTCGTGCGCCTGCGCGTGTCGCCCGCCGCCTGGCG
CGCCTTCAACCGCTTCCAGCGCTGGCTGTGGTACGTGGACGACGTCGAGT
GCCGCTGGCAGGCGCTGCTGCACGCCTCCGCGCACCGCTTCTCGTGGATG
GAGGAGAGCCTGGACACACTGGGCGCCATGGACGGCGGCCGCGCTTGGGC
CCGTCTGGCCGACTTTATTGGCGTCGACGTCGACTGGCGCCGCGTCGCCA
CGCGCCACAACTCCATTCAGCACAAGCAGCGCCGCAAGACCGACGCCTCC
GAGGCGCAGCTGCGCCAGTGGGACGAGCAGTACCGCCAGCTCGTCGGCGA
GTGCGCCCTCACCGACTCGCTGTCGTACGGCTGGCGCCACTTTGCGCTGC
GCCCGCTGCAGCCGCGCCCCGCGCGCTGA
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protein sequence of Gvermi12439.t2

>Gvermi12439.t2 ID=Gvermi12439.t2|Name=Gvermi12439.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=243bp
LLRRHAARRLVYTGHVPLAFGLAPALLRALPPGRVRIVRLRRDRIATAVS
LMALGPEREDPWGESSPPPASNASRVAAAAAAAAAAFALPPPAPTARWFP
RPTDAFVRLRVSPAAWRAFNRFQRWLWYVDDVECRWQALLHASAHRFSWM
EESLDTLGAMDGGRAWARLADFIGVDVDWRRVATRHNSIQHKQRRKTDAS
EAQLRQWDEQYRQLVGECALTDSLSYGWRHFALRPLQPRPAR*
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mRNA from alignment at ScGOVlb_3404:4751038..4751766-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12439.t2 ID=Gvermi12439.t2|Name=Gvermi12439.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=729bp|location=Sequence derived from alignment at ScGOVlb_3404:4751038..4751766- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCTGCGCCGCCACGCCGCCCGCCGCCTCGTGTACACCGGCCACGTCCC
GCTCGCCTTCGGCCTCGCCCCCGCCCTGCTGCGCGCCCTGCCGCCCGGCC
GCGTGCGCATCGTGCGCCTGCGCCGCGACCGCATCGCCACCGCCGTGTCG
CTCATGGCGCTCGGCCCGGAGCGCGAGGACCCGTGGGGCGAGTCGTCGCC
GCCGCCCGCCTCCAACGCCTCGCGTGTCGCCGCCGCCGCCGCCGCCGCCG
CCGCCGCGTTCGCGCTGCCGCCGCCCGCCCCTACCGCCCGCTGGTTCCCG
CGCCCCACCGACGCCTTCGTGCGCCTGCGCGTGTCGCCCGCCGCCTGGCG
CGCCTTCAACCGCTTCCAGCGCTGGCTGTGGTACGTGGACGACGTCGAGT
GCCGCTGGCAGGCGCTGCTGCACGCCTCCGCGCACCGCTTCTCGTGGATG
GAGGAGAGCCTGGACACACTGGGCGCCATGGACGGCGGCCGCGCTTGGGC
CCGTCTGGCCGACTTTATTGGCGTCGACGTCGACTGGCGCCGCGTCGCCA
CGCGCCACAACTCCATTCAGCACAAGCAGCGCCGCAAGACCGACGCCTCC
GAGGCGCAGCTGCGCCAGTGGGACGAGCAGTACCGCCAGCTCGTCGGCGA
GTGCGCCCTCACCGACTCGCTGTCGTACGGCTGGCGCCACTTTGCGCTGC
GCCCGCTGCAGCCGCGCCCCGCGCGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4751038..4751766-

>Gvermi12439.t2 ID=Gvermi12439.t2|Name=Gvermi12439.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=729bp|location=Sequence derived from alignment at ScGOVlb_3404:4751038..4751766- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCTGCGCCGCCACGCCGCCCGCCGCCTCGTGTACACCGGCCACGTCCC
GCTCGCCTTCGGCCTCGCCCCCGCCCTGCTGCGCGCCCTGCCGCCCGGCC
GCGTGCGCATCGTGCGCCTGCGCCGCGACCGCATCGCCACCGCCGTGTCG
CTCATGGCGCTCGGCCCGGAGCGCGAGGACCCGTGGGGCGAGTCGTCGCC
GCCGCCCGCCTCCAACGCCTCGCGTGTCGCCGCCGCCGCCGCCGCCGCCG
CCGCCGCGTTCGCGCTGCCGCCGCCCGCCCCTACCGCCCGCTGGTTCCCG
CGCCCCACCGACGCCTTCGTGCGCCTGCGCGTGTCGCCCGCCGCCTGGCG
CGCCTTCAACCGCTTCCAGCGCTGGCTGTGGTACGTGGACGACGTCGAGT
GCCGCTGGCAGGCGCTGCTGCACGCCTCCGCGCACCGCTTCTCGTGGATG
GAGGAGAGCCTGGACACACTGGGCGCCATGGACGGCGGCCGCGCTTGGGC
CCGTCTGGCCGACTTTATTGGCGTCGACGTCGACTGGCGCCGCGTCGCCA
CGCGCCACAACTCCATTCAGCACAAGCAGCGCCGCAAGACCGACGCCTCC
GAGGCGCAGCTGCGCCAGTGGGACGAGCAGTACCGCCAGCTCGTCGGCGA
GTGCGCCCTCACCGACTCGCTGTCGTACGGCTGGCGCCACTTTGCGCTGC
GCCCGCTGCAGCCGCGCCCCGCGCGCTGA
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