Gvermi12438.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12438.t1
Unique NameGvermi12438.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length517
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4743685..4745235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005649809.1
PFAMsAsparaginase
Max annot lvl3041|Chlorophyta
Evalue2.83e-120
EggNOG OGsCOG0252@1|root,KOG0503@2759|Eukaryota,37SGQ@33090|Viridiplantae,34GTR@3041|Chlorophyta
DescriptionAsparaginase
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12438Gvermi12438Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4743685..4745235 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12438.t1.stop1Gvermi12438.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4743685..4743687 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12438.t1.CDS1Gvermi12438.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4743685..4745235 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12438.t1.exon1Gvermi12438.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4743685..4745235 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12438.t1.start1Gvermi12438.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4745233..4745235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12438.t1Gvermi12438.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4743685..4745235 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12438.t1 ID=Gvermi12438.t1|Name=Gvermi12438.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=517bp
MPPAFVGPFVPPAAATARTARPRRPHRSPPRANAPHAPHPANGLPNRPDP
NALRPPHPATPPRPLAPDFLNLTAAPDITHINADAHADVHTDAAAAAAAA
AAAAAVAHQHPAPPLFLPPDARSLHPAALPHHPVSLQRPAVESPPTPLSR
SPPQPAVHAALHTAPTSSSSPATPHSHALPLPPHLPSFPLPRVLIIHCGG
TFGMQQSASPRSTSLRPAKFLADLQHAFPELRHIAALDVSTPMNLDSTRM
GPDHWIRIAKLLHRHRPHYHGFVIIHGTDTMAYTGAALSLMLPGFRKPVV
LTGSQRPMLMPRSDARQNLLDAVTVACQPRLQEFAVCFGGLLLRANRAMK
TSSSAYRAFSSPTHPPLAVLGVDIEWNQFALWNDPGVYRPRFKLDPNVIR
IPVVPGANPKLAYGDLYARGVRGAVIESFGVGNVPHHRGAAWMGWLRSQQ
RLGLKIYLSTQCATGPLNPTLYNTGAAGALGATSTKRMTTETAVVKMMLC
LAHPDLHLSYPLAGEL*
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spliced messenger RNA

>Gvermi12438.t1 ID=Gvermi12438.t1|Name=Gvermi12438.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1551bp|location=Sequence derived from alignment at ScGOVlb_3404:4743685..4745235- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCCGCCTTCGTCGGCCCCTTTGTTCCGCCCGCCGCCGCCACCGC
CCGCACCGCCCGCCCGCGCCGCCCCCATCGCTCCCCGCCGCGCGCCAACG
CCCCGCACGCCCCGCACCCCGCCAACGGCCTGCCCAACCGCCCCGACCCC
AATGCCTTGCGCCCTCCGCACCCCGCCACTCCGCCGCGCCCCCTTGCCCC
CGACTTTCTCAACCTCACCGCAGCCCCGGATATAACCCACATCAATGCCG
ACGCCCACGCTGACGTCCACACCGACGCCGCCGCTGCCGCCGCTGCCGCC
GCCGCCGCCGCCGCCGTGGCGCACCAACACCCCGCCCCGCCGCTCTTCCT
GCCGCCCGACGCTCGCTCGCTCCACCCCGCCGCCCTGCCCCACCATCCCG
TCTCGCTCCAGCGCCCTGCCGTCGAGTCGCCGCCCACCCCGCTCAGCCGC
TCGCCGCCGCAGCCCGCCGTCCACGCCGCCCTCCACACCGCGCCCACGTC
CAGCTCGAGCCCCGCCACGCCGCACAGCCACGCTTTGCCACTGCCGCCGC
ACTTGCCCTCCTTCCCGCTGCCGCGCGTGCTCATCATCCACTGCGGCGGC
ACCTTCGGCATGCAGCAGTCCGCCTCGCCGCGCTCCACGTCGCTCAGGCC
GGCCAAGTTCCTGGCCGACCTGCAGCACGCCTTCCCCGAGCTGCGCCACA
TCGCCGCGCTCGACGTGTCCACCCCGATGAACCTGGACAGCACGCGCATG
GGGCCGGACCACTGGATCAGGATCGCCAAGCTGCTGCACAGGCACCGCCC
GCACTACCACGGCTTTGTCATCATCCACGGCACCGACACCATGGCCTACA
CGGGCGCCGCCCTCTCGCTCATGCTACCCGGCTTCCGCAAGCCCGTCGTC
CTCACGGGCAGCCAGCGCCCCATGCTCATGCCGCGCTCCGACGCGCGCCA
GAACCTGCTGGACGCCGTCACCGTCGCGTGCCAGCCGCGCCTGCAGGAGT
TCGCCGTGTGCTTTGGCGGGCTGCTGCTGCGCGCCAACCGCGCCATGAAG
ACCTCCTCCTCCGCCTACCGCGCCTTCTCGTCGCCCACGCACCCGCCGCT
CGCCGTGCTGGGCGTCGACATCGAGTGGAACCAGTTCGCGCTGTGGAACG
ACCCGGGCGTGTACCGCCCGCGCTTCAAGCTCGACCCCAACGTCATCAGG
ATCCCCGTCGTGCCGGGCGCCAACCCCAAGCTGGCGTACGGCGACCTGTA
CGCCCGCGGCGTGCGCGGCGCCGTCATCGAGAGCTTCGGCGTGGGCAACG
TGCCGCACCACCGCGGCGCCGCCTGGATGGGCTGGCTGCGCTCGCAGCAG
AGGCTCGGATTGAAGATTTACCTGTCCACGCAGTGTGCCACCGGCCCGCT
CAACCCCACCCTTTACAACACGGGCGCCGCCGGCGCGCTGGGCGCCACCA
GCACCAAGCGCATGACCACGGAGACCGCCGTGGTGAAAATGATGCTGTGC
CTGGCGCACCCGGACCTGCACCTCAGTTATCCTTTGGCCGGCGAACTGTA
G
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protein sequence of Gvermi12438.t1

>Gvermi12438.t1 ID=Gvermi12438.t1|Name=Gvermi12438.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=517bp
MPPAFVGPFVPPAAATARTARPRRPHRSPPRANAPHAPHPANGLPNRPDP
NALRPPHPATPPRPLAPDFLNLTAAPDITHINADAHADVHTDAAAAAAAA
AAAAAVAHQHPAPPLFLPPDARSLHPAALPHHPVSLQRPAVESPPTPLSR
SPPQPAVHAALHTAPTSSSSPATPHSHALPLPPHLPSFPLPRVLIIHCGG
TFGMQQSASPRSTSLRPAKFLADLQHAFPELRHIAALDVSTPMNLDSTRM
GPDHWIRIAKLLHRHRPHYHGFVIIHGTDTMAYTGAALSLMLPGFRKPVV
LTGSQRPMLMPRSDARQNLLDAVTVACQPRLQEFAVCFGGLLLRANRAMK
TSSSAYRAFSSPTHPPLAVLGVDIEWNQFALWNDPGVYRPRFKLDPNVIR
IPVVPGANPKLAYGDLYARGVRGAVIESFGVGNVPHHRGAAWMGWLRSQQ
RLGLKIYLSTQCATGPLNPTLYNTGAAGALGATSTKRMTTETAVVKMMLC
LAHPDLHLSYPLAGEL*
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mRNA from alignment at ScGOVlb_3404:4743685..4745235-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12438.t1 ID=Gvermi12438.t1|Name=Gvermi12438.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1551bp|location=Sequence derived from alignment at ScGOVlb_3404:4743685..4745235- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGCCCGCCTTCGTCGGCCCCTTTGTTCCGCCCGCCGCCGCCACCGC
CCGCACCGCCCGCCCGCGCCGCCCCCATCGCTCCCCGCCGCGCGCCAACG
CCCCGCACGCCCCGCACCCCGCCAACGGCCTGCCCAACCGCCCCGACCCC
AATGCCTTGCGCCCTCCGCACCCCGCCACTCCGCCGCGCCCCCTTGCCCC
CGACTTTCTCAACCTCACCGCAGCCCCGGATATAACCCACATCAATGCCG
ACGCCCACGCTGACGTCCACACCGACGCCGCCGCTGCCGCCGCTGCCGCC
GCCGCCGCCGCCGCCGTGGCGCACCAACACCCCGCCCCGCCGCTCTTCCT
GCCGCCCGACGCTCGCTCGCTCCACCCCGCCGCCCTGCCCCACCATCCCG
TCTCGCTCCAGCGCCCTGCCGTCGAGTCGCCGCCCACCCCGCTCAGCCGC
TCGCCGCCGCAGCCCGCCGTCCACGCCGCCCTCCACACCGCGCCCACGTC
CAGCTCGAGCCCCGCCACGCCGCACAGCCACGCTTTGCCACTGCCGCCGC
ACTTGCCCTCCTTCCCGCTGCCGCGCGTGCTCATCATCCACTGCGGCGGC
ACCTTCGGCATGCAGCAGTCCGCCTCGCCGCGCTCCACGTCGCTCAGGCC
GGCCAAGTTCCTGGCCGACCTGCAGCACGCCTTCCCCGAGCTGCGCCACA
TCGCCGCGCTCGACGTGTCCACCCCGATGAACCTGGACAGCACGCGCATG
GGGCCGGACCACTGGATCAGGATCGCCAAGCTGCTGCACAGGCACCGCCC
GCACTACCACGGCTTTGTCATCATCCACGGCACCGACACCATGGCCTACA
CGGGCGCCGCCCTCTCGCTCATGCTACCCGGCTTCCGCAAGCCCGTCGTC
CTCACGGGCAGCCAGCGCCCCATGCTCATGCCGCGCTCCGACGCGCGCCA
GAACCTGCTGGACGCCGTCACCGTCGCGTGCCAGCCGCGCCTGCAGGAGT
TCGCCGTGTGCTTTGGCGGGCTGCTGCTGCGCGCCAACCGCGCCATGAAG
ACCTCCTCCTCCGCCTACCGCGCCTTCTCGTCGCCCACGCACCCGCCGCT
CGCCGTGCTGGGCGTCGACATCGAGTGGAACCAGTTCGCGCTGTGGAACG
ACCCGGGCGTGTACCGCCCGCGCTTCAAGCTCGACCCCAACGTCATCAGG
ATCCCCGTCGTGCCGGGCGCCAACCCCAAGCTGGCGTACGGCGACCTGTA
CGCCCGCGGCGTGCGCGGCGCCGTCATCGAGAGCTTCGGCGTGGGCAACG
TGCCGCACCACCGCGGCGCCGCCTGGATGGGCTGGCTGCGCTCGCAGCAG
AGGCTCGGATTGAAGATTTACCTGTCCACGCAGTGTGCCACCGGCCCGCT
CAACCCCACCCTTTACAACACGGGCGCCGCCGGCGCGCTGGGCGCCACCA
GCACCAAGCGCATGACCACGGAGACCGCCGTGGTGAAAATGATGCTGTGC
CTGGCGCACCCGGACCTGCACCTCAGTTATCCTTTGGCCGGCGAACTGTA
G
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4743685..4745235-

>Gvermi12438.t1 ID=Gvermi12438.t1|Name=Gvermi12438.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1551bp|location=Sequence derived from alignment at ScGOVlb_3404:4743685..4745235- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGCCCGCCTTCGTCGGCCCCTTTGTTCCGCCCGCCGCCGCCACCGC
CCGCACCGCCCGCCCGCGCCGCCCCCATCGCTCCCCGCCGCGCGCCAACG
CCCCGCACGCCCCGCACCCCGCCAACGGCCTGCCCAACCGCCCCGACCCC
AATGCCTTGCGCCCTCCGCACCCCGCCACTCCGCCGCGCCCCCTTGCCCC
CGACTTTCTCAACCTCACCGCAGCCCCGGATATAACCCACATCAATGCCG
ACGCCCACGCTGACGTCCACACCGACGCCGCCGCTGCCGCCGCTGCCGCC
GCCGCCGCCGCCGCCGTGGCGCACCAACACCCCGCCCCGCCGCTCTTCCT
GCCGCCCGACGCTCGCTCGCTCCACCCCGCCGCCCTGCCCCACCATCCCG
TCTCGCTCCAGCGCCCTGCCGTCGAGTCGCCGCCCACCCCGCTCAGCCGC
TCGCCGCCGCAGCCCGCCGTCCACGCCGCCCTCCACACCGCGCCCACGTC
CAGCTCGAGCCCCGCCACGCCGCACAGCCACGCTTTGCCACTGCCGCCGC
ACTTGCCCTCCTTCCCGCTGCCGCGCGTGCTCATCATCCACTGCGGCGGC
ACCTTCGGCATGCAGCAGTCCGCCTCGCCGCGCTCCACGTCGCTCAGGCC
GGCCAAGTTCCTGGCCGACCTGCAGCACGCCTTCCCCGAGCTGCGCCACA
TCGCCGCGCTCGACGTGTCCACCCCGATGAACCTGGACAGCACGCGCATG
GGGCCGGACCACTGGATCAGGATCGCCAAGCTGCTGCACAGGCACCGCCC
GCACTACCACGGCTTTGTCATCATCCACGGCACCGACACCATGGCCTACA
CGGGCGCCGCCCTCTCGCTCATGCTACCCGGCTTCCGCAAGCCCGTCGTC
CTCACGGGCAGCCAGCGCCCCATGCTCATGCCGCGCTCCGACGCGCGCCA
GAACCTGCTGGACGCCGTCACCGTCGCGTGCCAGCCGCGCCTGCAGGAGT
TCGCCGTGTGCTTTGGCGGGCTGCTGCTGCGCGCCAACCGCGCCATGAAG
ACCTCCTCCTCCGCCTACCGCGCCTTCTCGTCGCCCACGCACCCGCCGCT
CGCCGTGCTGGGCGTCGACATCGAGTGGAACCAGTTCGCGCTGTGGAACG
ACCCGGGCGTGTACCGCCCGCGCTTCAAGCTCGACCCCAACGTCATCAGG
ATCCCCGTCGTGCCGGGCGCCAACCCCAAGCTGGCGTACGGCGACCTGTA
CGCCCGCGGCGTGCGCGGCGCCGTCATCGAGAGCTTCGGCGTGGGCAACG
TGCCGCACCACCGCGGCGCCGCCTGGATGGGCTGGCTGCGCTCGCAGCAG
AGGCTCGGATTGAAGATTTACCTGTCCACGCAGTGTGCCACCGGCCCGCT
CAACCCCACCCTTTACAACACGGGCGCCGCCGGCGCGCTGGGCGCCACCA
GCACCAAGCGCATGACCACGGAGACCGCCGTGGTGAAAATGATGCTGTGC
CTGGCGCACCCGGACCTGCACCTCAGTTATCCTTTGGCCGGCGAACTGTA
G
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