Gvermi12434.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12434.t2
Unique NameGvermi12434.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length276
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4735314..4736141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121380.JNIW01000039_gene1842
PFAMsFasciclin
Max annot lvl1297|Deinococcus-Thermus
KEGG koko:K19519
Evalue4.04e-09
EggNOG OGsCOG2335@1|root,COG2335@2|Bacteria,1WMNY@1297|Deinococcus-Thermus
DescriptionCOG2335 Secreted and surface protein containing fasciclin-like repeats
COG categoryM
BRITEko00000,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12434Gvermi12434Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4735314..4736141 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12434.t2.stop1Gvermi12434.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4735314..4735316 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12434.t2.CDS1Gvermi12434.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4735314..4736141 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12434.t2.exon1Gvermi12434.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4735314..4736141 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12434.t2.start1Gvermi12434.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4736139..4736141 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12434.t2Gvermi12434.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4735314..4736141 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12434.t2 ID=Gvermi12434.t2|Name=Gvermi12434.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=276bp
MVQKNAPVVSTEPSLASLLSSANRFSTLLRILAASQIPPQSLSGTVFAPV
NAAFSTLSPELLRTFMSDVQAARQLILRHVVLDVVPTAKLTANGFLPSAF
GGPLPYSSFAGLQLKVDGAPVAAYCDQTFDKGVVHAITTVLRPPGQKWPT
FAQTYVPPRARAPSVSQSASARARGATKPATVGGRRAMGLIAQQPAWMYG
PPYNAAKQEEYEPISVAVPDVSAVDYQLMPPGSVVVAPDSVNALELNPVS
GMSKYIGQTKRIVGKDALSDYSRLD*
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spliced messenger RNA

>Gvermi12434.t2 ID=Gvermi12434.t2|Name=Gvermi12434.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=828bp|location=Sequence derived from alignment at ScGOVlb_3404:4735314..4736141- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCAGAAGAACGCCCCCGTCGTGAGCACCGAGCCCTCGCTGGCCTC
GCTCCTCTCGTCGGCGAACCGCTTTTCCACGCTGCTGCGCATCCTCGCCG
CTAGCCAGATCCCGCCGCAATCGCTCAGCGGCACCGTGTTCGCCCCCGTC
AACGCCGCCTTTTCCACGCTGTCGCCCGAGCTGCTGCGCACCTTCATGTC
CGACGTGCAGGCGGCGCGCCAGCTCATCCTGCGCCACGTCGTGCTGGACG
TCGTCCCCACCGCCAAGCTCACCGCCAACGGCTTCCTGCCCTCCGCCTTT
GGCGGCCCGCTGCCCTACTCCTCCTTCGCCGGCCTGCAGCTCAAGGTCGA
CGGCGCCCCCGTCGCCGCGTATTGCGACCAGACCTTCGACAAGGGCGTCG
TGCACGCCATCACCACCGTGCTCAGGCCGCCCGGCCAGAAGTGGCCCACC
TTCGCCCAGACGTACGTGCCGCCGCGCGCGCGCGCGCCCAGCGTCAGCCA
GTCCGCCTCCGCGCGCGCGCGCGGCGCCACCAAGCCCGCCACCGTGGGCG
GCCGCCGCGCCATGGGTCTCATCGCGCAGCAGCCGGCGTGGATGTACGGG
CCGCCGTACAACGCCGCCAAGCAGGAGGAGTACGAGCCCATCTCCGTCGC
CGTGCCGGACGTGTCCGCCGTGGACTACCAGCTCATGCCGCCGGGCTCGG
TCGTCGTCGCCCCCGACTCCGTCAACGCGCTCGAGCTCAACCCCGTCAGC
GGCATGAGCAAGTACATCGGCCAGACCAAGCGCATCGTCGGCAAGGACGC
GCTCTCGGACTACTCCCGGTTGGACTGA
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protein sequence of Gvermi12434.t2

>Gvermi12434.t2 ID=Gvermi12434.t2|Name=Gvermi12434.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=276bp
MVQKNAPVVSTEPSLASLLSSANRFSTLLRILAASQIPPQSLSGTVFAPV
NAAFSTLSPELLRTFMSDVQAARQLILRHVVLDVVPTAKLTANGFLPSAF
GGPLPYSSFAGLQLKVDGAPVAAYCDQTFDKGVVHAITTVLRPPGQKWPT
FAQTYVPPRARAPSVSQSASARARGATKPATVGGRRAMGLIAQQPAWMYG
PPYNAAKQEEYEPISVAVPDVSAVDYQLMPPGSVVVAPDSVNALELNPVS
GMSKYIGQTKRIVGKDALSDYSRLD*
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mRNA from alignment at ScGOVlb_3404:4735314..4736141-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12434.t2 ID=Gvermi12434.t2|Name=Gvermi12434.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=828bp|location=Sequence derived from alignment at ScGOVlb_3404:4735314..4736141- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGCAGAAGAACGCCCCCGTCGTGAGCACCGAGCCCTCGCTGGCCTC
GCTCCTCTCGTCGGCGAACCGCTTTTCCACGCTGCTGCGCATCCTCGCCG
CTAGCCAGATCCCGCCGCAATCGCTCAGCGGCACCGTGTTCGCCCCCGTC
AACGCCGCCTTTTCCACGCTGTCGCCCGAGCTGCTGCGCACCTTCATGTC
CGACGTGCAGGCGGCGCGCCAGCTCATCCTGCGCCACGTCGTGCTGGACG
TCGTCCCCACCGCCAAGCTCACCGCCAACGGCTTCCTGCCCTCCGCCTTT
GGCGGCCCGCTGCCCTACTCCTCCTTCGCCGGCCTGCAGCTCAAGGTCGA
CGGCGCCCCCGTCGCCGCGTATTGCGACCAGACCTTCGACAAGGGCGTCG
TGCACGCCATCACCACCGTGCTCAGGCCGCCCGGCCAGAAGTGGCCCACC
TTCGCCCAGACGTACGTGCCGCCGCGCGCGCGCGCGCCCAGCGTCAGCCA
GTCCGCCTCCGCGCGCGCGCGCGGCGCCACCAAGCCCGCCACCGTGGGCG
GCCGCCGCGCCATGGGTCTCATCGCGCAGCAGCCGGCGTGGATGTACGGG
CCGCCGTACAACGCCGCCAAGCAGGAGGAGTACGAGCCCATCTCCGTCGC
CGTGCCGGACGTGTCCGCCGTGGACTACCAGCTCATGCCGCCGGGCTCGG
TCGTCGTCGCCCCCGACTCCGTCAACGCGCTCGAGCTCAACCCCGTCAGC
GGCATGAGCAAGTACATCGGCCAGACCAAGCGCATCGTCGGCAAGGACGC
GCTCTCGGACTACTCCCGGTTGGACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4735314..4736141-

>Gvermi12434.t2 ID=Gvermi12434.t2|Name=Gvermi12434.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=828bp|location=Sequence derived from alignment at ScGOVlb_3404:4735314..4736141- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGCAGAAGAACGCCCCCGTCGTGAGCACCGAGCCCTCGCTGGCCTC
GCTCCTCTCGTCGGCGAACCGCTTTTCCACGCTGCTGCGCATCCTCGCCG
CTAGCCAGATCCCGCCGCAATCGCTCAGCGGCACCGTGTTCGCCCCCGTC
AACGCCGCCTTTTCCACGCTGTCGCCCGAGCTGCTGCGCACCTTCATGTC
CGACGTGCAGGCGGCGCGCCAGCTCATCCTGCGCCACGTCGTGCTGGACG
TCGTCCCCACCGCCAAGCTCACCGCCAACGGCTTCCTGCCCTCCGCCTTT
GGCGGCCCGCTGCCCTACTCCTCCTTCGCCGGCCTGCAGCTCAAGGTCGA
CGGCGCCCCCGTCGCCGCGTATTGCGACCAGACCTTCGACAAGGGCGTCG
TGCACGCCATCACCACCGTGCTCAGGCCGCCCGGCCAGAAGTGGCCCACC
TTCGCCCAGACGTACGTGCCGCCGCGCGCGCGCGCGCCCAGCGTCAGCCA
GTCCGCCTCCGCGCGCGCGCGCGGCGCCACCAAGCCCGCCACCGTGGGCG
GCCGCCGCGCCATGGGTCTCATCGCGCAGCAGCCGGCGTGGATGTACGGG
CCGCCGTACAACGCCGCCAAGCAGGAGGAGTACGAGCCCATCTCCGTCGC
CGTGCCGGACGTGTCCGCCGTGGACTACCAGCTCATGCCGCCGGGCTCGG
TCGTCGTCGCCCCCGACTCCGTCAACGCGCTCGAGCTCAACCCCGTCAGC
GGCATGAGCAAGTACATCGGCCAGACCAAGCGCATCGTCGGCAAGGACGC
GCTCTCGGACTACTCCCGGTTGGACTGA
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