Gvermi12433.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12433.t1
Unique NameGvermi12433.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length319
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4733507..4734463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog65093.PCC7418_3695
Preferred namesigA
PFAMsSigma70_r1_2,Sigma70_r2,Sigma70_r3,Sigma70_r4
Max annot lvl1117|Cyanobacteria
KEGG koko:K03086
Evalue1.08e-123
EggNOG OGsCOG0568@1|root,COG0568@2|Bacteria,1G0DU@1117|Cyanobacteria
DescriptionSigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
COG categoryK
BRITEko00000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12433Gvermi12433Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4733507..4734463 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12433.t1.start1Gvermi12433.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4733507..4733509 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12433.t1.CDS1Gvermi12433.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4733507..4734463 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12433.t1.exon1Gvermi12433.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4733507..4734463 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12433.t1.stop1Gvermi12433.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4734461..4734463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12433.t1Gvermi12433.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4733507..4734463 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12433.t1 ID=Gvermi12433.t1|Name=Gvermi12433.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=319bp
MSDNTVRWYLQLIGTDRLLTADEEVKYGRLVAMLMRWQRLRTQLTDSIGR
QPTDDEWADFVDVDRLTFHAQLAQARKAKDRMIVCNLRLVVSIAKRYLNR
GMPLSDLIQEGTLGLIRACEKFDADKGFKFSTYATWWVRQSVTRAIADQS
RTVRLPVHLYDTITSIRRATKLLTNELGRPPLENEVAEYCNITVEKLRST
RVNMLSAMPLDCPLTNNDDALTLSDVIESDAESPEDKVESSLLRDDLEHV
VNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRK
LRHPFRSAVLKAYTPPGS*
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spliced messenger RNA

>Gvermi12433.t1 ID=Gvermi12433.t1|Name=Gvermi12433.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=957bp|location=Sequence derived from alignment at ScGOVlb_3404:4733507..4734463+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGACAACACCGTGCGCTGGTACCTGCAGCTCATCGGCACCGACCG
CCTGCTCACCGCCGACGAAGAGGTCAAGTACGGCCGTCTCGTCGCCATGC
TCATGCGCTGGCAGCGCCTCCGCACCCAGCTCACAGACTCCATTGGCAGG
CAGCCCACCGACGACGAGTGGGCCGACTTTGTCGACGTCGACCGGCTCAC
GTTTCACGCCCAACTTGCCCAGGCGCGCAAGGCTAAGGACCGCATGATTG
TTTGCAACCTGCGCCTCGTCGTGTCCATTGCCAAGCGCTACCTCAACCGC
GGAATGCCCCTCTCCGACCTCATTCAGGAGGGAACGCTCGGGCTCATTCG
CGCCTGTGAGAAGTTTGACGCCGACAAGGGCTTCAAGTTCTCCACTTACG
CTACGTGGTGGGTGCGCCAGTCCGTCACGCGCGCCATTGCCGACCAGAGT
CGAACCGTCCGTCTCCCGGTTCACTTGTATGATACCATTACCTCCATACG
CCGCGCGACCAAGTTACTCACCAATGAGCTGGGCCGCCCACCGCTGGAAA
ACGAGGTTGCCGAGTATTGTAATATTACCGTCGAAAAGCTTCGCTCTACT
CGCGTTAATATGCTGAGCGCCATGCCCCTGGATTGCCCGCTTACCAACAA
CGATGATGCGCTCACGCTCAGCGATGTTATCGAGAGCGACGCCGAGAGCC
CCGAGGACAAGGTTGAGAGCTCCCTGCTGCGCGATGACCTGGAGCACGTC
GTCAACAGCCTCACCCCGCGGGAACGCGATGTCGTCCGCATGCGCTATGG
ACTGGACGACGGCAGGGCCAAGACCTTGGAAGAGATTGGTCGTGTTTTTG
ACGTCACCAAGGAACGTGTGAGACAGATTGAATCAAAGGCACTGCGGAAG
CTCCGCCACCCTTTTCGCTCTGCCGTGCTCAAGGCGTACACGCCACCAGG
TTCATAG
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protein sequence of Gvermi12433.t1

>Gvermi12433.t1 ID=Gvermi12433.t1|Name=Gvermi12433.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=319bp
MSDNTVRWYLQLIGTDRLLTADEEVKYGRLVAMLMRWQRLRTQLTDSIGR
QPTDDEWADFVDVDRLTFHAQLAQARKAKDRMIVCNLRLVVSIAKRYLNR
GMPLSDLIQEGTLGLIRACEKFDADKGFKFSTYATWWVRQSVTRAIADQS
RTVRLPVHLYDTITSIRRATKLLTNELGRPPLENEVAEYCNITVEKLRST
RVNMLSAMPLDCPLTNNDDALTLSDVIESDAESPEDKVESSLLRDDLEHV
VNSLTPRERDVVRMRYGLDDGRAKTLEEIGRVFDVTKERVRQIESKALRK
LRHPFRSAVLKAYTPPGS*
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mRNA from alignment at ScGOVlb_3404:4733507..4734463+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12433.t1 ID=Gvermi12433.t1|Name=Gvermi12433.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=957bp|location=Sequence derived from alignment at ScGOVlb_3404:4733507..4734463+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCGACAACACCGTGCGCTGGTACCTGCAGCTCATCGGCACCGACCG
CCTGCTCACCGCCGACGAAGAGGTCAAGTACGGCCGTCTCGTCGCCATGC
TCATGCGCTGGCAGCGCCTCCGCACCCAGCTCACAGACTCCATTGGCAGG
CAGCCCACCGACGACGAGTGGGCCGACTTTGTCGACGTCGACCGGCTCAC
GTTTCACGCCCAACTTGCCCAGGCGCGCAAGGCTAAGGACCGCATGATTG
TTTGCAACCTGCGCCTCGTCGTGTCCATTGCCAAGCGCTACCTCAACCGC
GGAATGCCCCTCTCCGACCTCATTCAGGAGGGAACGCTCGGGCTCATTCG
CGCCTGTGAGAAGTTTGACGCCGACAAGGGCTTCAAGTTCTCCACTTACG
CTACGTGGTGGGTGCGCCAGTCCGTCACGCGCGCCATTGCCGACCAGAGT
CGAACCGTCCGTCTCCCGGTTCACTTGTATGATACCATTACCTCCATACG
CCGCGCGACCAAGTTACTCACCAATGAGCTGGGCCGCCCACCGCTGGAAA
ACGAGGTTGCCGAGTATTGTAATATTACCGTCGAAAAGCTTCGCTCTACT
CGCGTTAATATGCTGAGCGCCATGCCCCTGGATTGCCCGCTTACCAACAA
CGATGATGCGCTCACGCTCAGCGATGTTATCGAGAGCGACGCCGAGAGCC
CCGAGGACAAGGTTGAGAGCTCCCTGCTGCGCGATGACCTGGAGCACGTC
GTCAACAGCCTCACCCCGCGGGAACGCGATGTCGTCCGCATGCGCTATGG
ACTGGACGACGGCAGGGCCAAGACCTTGGAAGAGATTGGTCGTGTTTTTG
ACGTCACCAAGGAACGTGTGAGACAGATTGAATCAAAGGCACTGCGGAAG
CTCCGCCACCCTTTTCGCTCTGCCGTGCTCAAGGCGTACACGCCACCAGG
TTCATAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4733507..4734463+

>Gvermi12433.t1 ID=Gvermi12433.t1|Name=Gvermi12433.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=957bp|location=Sequence derived from alignment at ScGOVlb_3404:4733507..4734463+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCGACAACACCGTGCGCTGGTACCTGCAGCTCATCGGCACCGACCG
CCTGCTCACCGCCGACGAAGAGGTCAAGTACGGCCGTCTCGTCGCCATGC
TCATGCGCTGGCAGCGCCTCCGCACCCAGCTCACAGACTCCATTGGCAGG
CAGCCCACCGACGACGAGTGGGCCGACTTTGTCGACGTCGACCGGCTCAC
GTTTCACGCCCAACTTGCCCAGGCGCGCAAGGCTAAGGACCGCATGATTG
TTTGCAACCTGCGCCTCGTCGTGTCCATTGCCAAGCGCTACCTCAACCGC
GGAATGCCCCTCTCCGACCTCATTCAGGAGGGAACGCTCGGGCTCATTCG
CGCCTGTGAGAAGTTTGACGCCGACAAGGGCTTCAAGTTCTCCACTTACG
CTACGTGGTGGGTGCGCCAGTCCGTCACGCGCGCCATTGCCGACCAGAGT
CGAACCGTCCGTCTCCCGGTTCACTTGTATGATACCATTACCTCCATACG
CCGCGCGACCAAGTTACTCACCAATGAGCTGGGCCGCCCACCGCTGGAAA
ACGAGGTTGCCGAGTATTGTAATATTACCGTCGAAAAGCTTCGCTCTACT
CGCGTTAATATGCTGAGCGCCATGCCCCTGGATTGCCCGCTTACCAACAA
CGATGATGCGCTCACGCTCAGCGATGTTATCGAGAGCGACGCCGAGAGCC
CCGAGGACAAGGTTGAGAGCTCCCTGCTGCGCGATGACCTGGAGCACGTC
GTCAACAGCCTCACCCCGCGGGAACGCGATGTCGTCCGCATGCGCTATGG
ACTGGACGACGGCAGGGCCAAGACCTTGGAAGAGATTGGTCGTGTTTTTG
ACGTCACCAAGGAACGTGTGAGACAGATTGAATCAAAGGCACTGCGGAAG
CTCCGCCACCCTTTTCGCTCTGCCGTGCTCAAGGCGTACACGCCACCAGG
TTCATAG
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